Wall clock time and date at job start Tue Mar 31 2020 12:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35903 * 117.00016 * 2 1 4 4 C 1.38482 * 119.78283 * 0.24463 * 3 2 1 5 5 C 1.38131 * 119.70525 * 180.27774 * 4 3 2 6 6 C 1.38004 * 119.83248 * 359.66995 * 5 4 3 7 7 C 1.38912 * 120.66754 * 359.95698 * 6 5 4 8 8 C 1.37617 * 119.71259 * 0.22891 * 7 6 5 9 9 C 1.50623 * 122.59131 * 179.68154 * 8 7 6 10 10 C 1.52735 * 110.58955 * 17.57820 * 9 8 7 11 11 C 1.53319 * 108.37345 * 308.95143 * 10 9 8 12 12 H 1.08997 * 109.68692 * 310.17297 * 11 10 9 13 13 N 1.46906 * 109.68507 * 189.65573 * 11 10 9 14 14 C 1.46843 * 110.99964 * 301.66127 * 13 11 10 15 15 C 1.53036 * 109.52539 * 174.15900 * 14 13 11 16 16 C 1.53116 * 109.27759 * 59.17532 * 15 14 13 17 17 C 1.53117 * 109.16326 * 302.35226 * 16 15 14 18 18 H 1.09001 * 109.50182 * 297.66967 * 17 16 15 19 19 C 1.50696 * 109.50322 * 177.59645 * 17 16 15 20 20 H 1.08004 * 120.00128 * 275.02988 * 19 17 16 21 21 C 1.37879 * 120.00252 * 95.03031 * 19 17 16 22 22 N 1.31517 * 120.00061 * 184.68941 * 21 19 17 23 23 Si 1.86794 * 120.00109 * 4.69697 * 21 19 17 24 24 H 1.48503 * 109.47513 * 84.84026 * 23 21 19 25 25 H 1.48505 * 109.47292 * 204.84112 * 23 21 19 26 26 H 1.48502 * 109.46884 * 324.83777 * 23 21 19 27 27 C 1.46848 * 111.00092 * 177.45153 * 13 11 10 28 28 C 1.50639 * 117.73359 * 180.35981 * 7 6 5 29 29 H 1.09002 * 109.47639 * 59.99879 * 1 2 3 30 30 H 1.08999 * 109.47315 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47380 * 299.99970 * 1 2 3 32 32 H 1.07997 * 120.15011 * 0.04377 * 4 3 2 33 33 H 1.07999 * 120.08409 * 179.63791 * 5 4 3 34 34 H 1.08005 * 119.66622 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.25115 * 137.86847 * 9 8 7 36 36 H 1.09002 * 109.25133 * 257.32815 * 9 8 7 37 37 H 1.09001 * 109.68228 * 68.67502 * 10 9 8 38 38 H 1.09004 * 109.68247 * 189.19466 * 10 9 8 39 39 H 1.08997 * 109.46414 * 294.17374 * 14 13 11 40 40 H 1.09004 * 109.46439 * 54.13996 * 14 13 11 41 41 H 1.08993 * 109.50688 * 179.12267 * 15 14 13 42 42 H 1.09006 * 109.50221 * 299.23782 * 15 14 13 43 43 H 1.09004 * 109.52145 * 62.25761 * 16 15 14 44 44 H 1.09002 * 109.52580 * 182.37711 * 16 15 14 45 45 H 0.96997 * 120.00274 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.46026 * 305.85534 * 27 13 11 47 47 H 1.08993 * 109.46232 * 65.82145 * 27 13 11 48 48 H 1.09001 * 109.26014 * 77.19241 * 28 7 6 49 49 H 1.09008 * 109.22019 * 317.74521 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2873 2.3694 0.0051 5 6 1.9161 3.5993 -0.0007 6 6 3.2945 3.6657 -0.0047 7 6 4.0597 2.5063 -0.0020 8 6 3.4378 1.2787 -0.0001 9 6 4.2033 -0.0186 -0.0042 10 6 5.6520 0.2113 0.4215 11 6 6.2294 1.3516 -0.4252 12 1 6.0288 1.1637 -1.4800 13 7 7.6791 1.4453 -0.2065 14 6 7.9837 1.6718 1.2120 15 6 9.4983 1.6187 1.4247 16 6 10.1678 2.6920 0.5620 17 6 9.7953 2.4619 -0.9053 18 1 10.1741 1.4926 -1.2292 19 6 10.4021 3.5487 -1.7548 20 1 9.8857 4.4891 -1.8786 21 6 11.6167 3.3424 -2.3740 22 7 12.1903 4.3213 -3.0391 23 14 12.4473 1.6726 -2.2685 24 1 11.9116 0.7852 -3.3319 25 1 13.9120 1.8359 -2.4512 26 1 12.1786 1.0694 -0.9384 27 6 8.2721 2.4906 -1.0504 28 6 5.5586 2.6557 0.0017 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 0.2089 2.3117 0.0098 33 1 1.3304 4.5067 -0.0026 34 1 3.7833 4.6288 -0.0096 35 1 3.7317 -0.7163 0.6877 36 1 4.1872 -0.4422 -1.0084 37 1 5.6859 0.4837 1.4764 38 1 6.2312 -0.6976 0.2583 39 1 7.6089 2.6502 1.5123 40 1 7.5051 0.8993 1.8141 41 1 9.7250 1.8023 2.4749 42 1 9.8719 0.6357 1.1376 43 1 9.8237 3.6778 0.8749 44 1 11.2498 2.6301 0.6781 45 1 13.0446 4.1762 -3.4750 46 1 8.0031 2.3128 -2.0916 47 1 7.8959 3.4652 -0.7395 48 1 5.8912 2.9189 1.0058 49 1 5.8419 3.4489 -0.6902 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256649326.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:46 Heat of formation + Delta-G solvation = -43.321536 kcal Electronic energy + Delta-G solvation = -26963.525366 eV Core-core repulsion = 23467.871656 eV Total energy + Delta-G solvation = -3495.653710 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = -0.05 seconds Orbital eigenvalues (eV) -41.68445 -40.37293 -38.70769 -36.81822 -34.90385 -33.69294 -32.41147 -31.95140 -30.65242 -28.88725 -28.01889 -26.95656 -25.43719 -24.23701 -23.21802 -22.81441 -22.30881 -20.60420 -19.75807 -18.88096 -18.61349 -17.46751 -17.03015 -16.64230 -16.53416 -16.02017 -15.92632 -15.62819 -15.22137 -15.11240 -14.83316 -14.57643 -14.41982 -14.37074 -14.07150 -13.91772 -13.59601 -13.47247 -13.00572 -12.94501 -12.82336 -12.74761 -12.62361 -12.39145 -12.33316 -11.94390 -11.84656 -11.74933 -11.70236 -11.51994 -11.35504 -11.19974 -11.00916 -10.72198 -10.59728 -9.59402 -9.07166 -9.04776 -8.27695 -6.30714 0.35398 0.46788 1.37509 1.38002 1.50334 2.37519 2.38629 2.74958 2.98886 3.12961 3.67091 3.82192 3.86002 3.98876 4.10225 4.15887 4.19468 4.23396 4.30988 4.33911 4.41319 4.41668 4.47888 4.53546 4.55321 4.62689 4.66641 4.75087 4.75963 4.82063 4.84446 4.91052 4.93968 5.01934 5.02965 5.14005 5.18654 5.24575 5.25297 5.29944 5.37468 5.44868 5.53249 5.59959 5.67929 5.70242 5.79067 5.82283 6.20398 6.34426 6.42334 6.48019 6.77650 7.35581 8.89400 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.023539 B = 0.003054 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.214417 B = 9167.377530 C = 9496.287643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.330 6.330 3 C 0.116 3.884 4 C -0.216 4.216 5 C -0.085 4.085 6 C -0.172 4.172 7 C -0.043 4.043 8 C -0.123 4.123 9 C -0.061 4.061 10 C -0.101 4.101 11 C 0.088 3.912 12 H 0.072 0.928 13 N -0.536 5.536 14 C 0.056 3.944 15 C -0.113 4.113 16 C -0.110 4.110 17 C 0.019 3.981 18 H 0.033 0.967 19 C -0.513 4.513 20 H 0.028 0.972 21 C 0.012 3.988 22 N -0.952 5.952 23 Si 0.944 3.056 24 H -0.269 1.269 25 H -0.290 1.290 26 H -0.245 1.245 27 C 0.084 3.916 28 C -0.108 4.108 29 H 0.062 0.938 30 H 0.117 0.883 31 H 0.064 0.936 32 H 0.151 0.849 33 H 0.147 0.853 34 H 0.125 0.875 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.081 0.919 39 H 0.031 0.969 40 H 0.094 0.906 41 H 0.080 0.920 42 H 0.061 0.939 43 H 0.040 0.960 44 H 0.037 0.963 45 H 0.265 0.735 46 H 0.052 0.948 47 H 0.018 0.982 48 H 0.082 0.918 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.671 -9.661 10.593 28.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.243 6.243 3 C 0.070 3.930 4 C -0.235 4.235 5 C -0.103 4.103 6 C -0.191 4.191 7 C -0.043 4.043 8 C -0.123 4.123 9 C -0.098 4.098 10 C -0.138 4.138 11 C -0.020 4.020 12 H 0.090 0.910 13 N -0.259 5.259 14 C -0.071 4.071 15 C -0.151 4.151 16 C -0.149 4.149 17 C 0.000 4.000 18 H 0.051 0.949 19 C -0.552 4.552 20 H 0.047 0.953 21 C -0.185 4.185 22 N -0.593 5.593 23 Si 0.768 3.232 24 H -0.195 1.195 25 H -0.216 1.216 26 H -0.168 1.168 27 C -0.044 4.044 28 C -0.147 4.147 29 H 0.080 0.920 30 H 0.136 0.864 31 H 0.083 0.917 32 H 0.168 0.832 33 H 0.165 0.835 34 H 0.143 0.857 35 H 0.102 0.898 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.100 0.900 39 H 0.049 0.951 40 H 0.113 0.887 41 H 0.098 0.902 42 H 0.080 0.920 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.074 0.926 46 H 0.070 0.930 47 H 0.036 0.964 48 H 0.100 0.900 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -24.224 -10.267 10.358 28.276 hybrid contribution 0.262 1.148 -0.419 1.250 sum -23.963 -9.119 9.938 27.498 Atomic orbital electron populations 1.23323 0.76672 1.05451 1.02116 1.86037 1.23163 1.26609 1.88535 1.19126 0.91741 0.84996 0.97103 1.21419 1.01029 0.91949 1.09086 1.21120 0.94121 0.98095 0.96915 1.21293 0.94671 0.98076 1.05021 1.19435 0.95059 0.92208 0.97634 1.19143 0.90890 0.95656 1.06641 1.20194 0.93833 0.93455 1.02322 1.21568 0.94767 0.98283 0.99231 1.21713 0.85953 0.94282 1.00089 0.90961 1.62261 1.10295 1.46596 1.06736 1.22161 0.96107 1.00043 0.88779 1.21636 0.94942 0.98985 0.99537 1.21734 0.98848 0.97812 0.96474 1.19104 0.92520 0.95190 0.93201 0.94880 1.21266 1.04523 1.00439 1.28937 0.95329 1.25915 0.97659 1.00435 0.94453 1.70061 1.18256 1.34245 1.36694 0.85784 0.76864 0.80256 0.80281 1.19468 1.21646 1.16804 1.21894 0.95345 0.91317 0.95846 1.21127 0.91269 0.99899 1.02389 0.91954 0.86430 0.91725 0.83191 0.83519 0.85740 0.89793 0.90979 0.91174 0.89989 0.95113 0.88741 0.90174 0.92016 0.94077 0.94405 0.92637 0.92961 0.96374 0.89992 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.31 16 2 O -0.33 -6.35 9.54 -92.45 -0.88 -7.23 16 3 C 0.12 2.52 6.65 22.60 0.15 2.67 16 4 C -0.22 -3.99 9.02 22.30 0.20 -3.79 16 5 C -0.08 -1.61 10.04 22.19 0.22 -1.39 16 6 C -0.17 -3.96 9.60 22.38 0.21 -3.74 16 7 C -0.04 -1.08 5.74 -19.87 -0.11 -1.19 16 8 C -0.12 -2.96 5.75 -19.77 -0.11 -3.08 16 9 C -0.06 -1.33 5.27 29.74 0.16 -1.17 16 10 C -0.10 -2.29 4.65 30.61 0.14 -2.15 16 11 C 0.09 2.47 2.28 44.93 0.10 2.57 16 12 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 13 N -0.54 -17.65 4.67 -871.03 -4.07 -21.72 16 14 C 0.06 1.64 4.67 86.33 0.40 2.05 16 15 C -0.11 -3.61 6.09 30.65 0.19 -3.42 16 16 C -0.11 -4.58 5.27 30.67 0.16 -4.42 16 17 C 0.02 0.90 1.92 -11.49 -0.02 0.88 16 18 H 0.03 1.59 5.31 -2.39 -0.01 1.58 16 19 C -0.51 -29.63 8.86 25.60 0.23 -29.40 16 20 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 21 C 0.01 0.71 5.47 84.65 0.46 1.17 16 22 N -0.95 -60.43 13.96 21.45 0.30 -60.13 16 23 Si 0.94 45.47 26.98 68.60 1.85 47.33 16 24 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 26 H -0.24 -10.96 6.83 99.48 0.68 -10.28 16 27 C 0.08 3.43 4.26 86.32 0.37 3.80 16 28 C -0.11 -2.94 4.29 29.74 0.13 -2.81 16 29 H 0.06 0.55 7.66 -2.39 -0.02 0.53 16 30 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.53 7.64 -2.39 -0.02 0.51 16 32 H 0.15 1.88 6.27 -2.91 -0.02 1.86 16 33 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 34 H 0.12 2.67 8.05 -2.91 -0.02 2.65 16 35 H 0.08 1.69 7.77 -2.39 -0.02 1.67 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 1.51 6.82 -2.39 -0.02 1.49 16 38 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 39 H 0.03 0.90 6.45 -2.39 -0.02 0.89 16 40 H 0.09 2.26 6.21 -2.38 -0.01 2.25 16 41 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 42 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 43 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 44 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 46 H 0.05 2.24 8.10 -2.39 -0.02 2.22 16 47 H 0.02 0.76 6.92 -2.39 -0.02 0.74 16 48 H 0.08 2.19 6.09 -2.39 -0.01 2.17 16 49 H 0.06 1.92 7.08 -2.38 -0.02 1.91 16 Total: -1.00 -68.32 365.69 2.09 -66.23 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: 0.90 Total: 17.63 kcal Atomic # 6 Polarization: -46.10 SS G_CDS: 3.99 Total: -42.11 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -3.77 Total: -81.85 kcal Atomic # 8 Polarization: -6.35 SS G_CDS: -0.88 Total: -7.23 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.85 Total: 47.33 kcal Total: -68.32 2.09 -66.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256649326.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.912 kcal (2) G-P(sol) polarization free energy of solvation -68.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.05 seconds