Wall clock time and date at job start Tue Mar 31 2020 12:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35899 * 116.99755 * 2 1 4 4 C 1.38475 * 119.79265 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.71034 * 180.02562 * 4 3 2 6 6 C 1.37998 * 119.83776 * 0.11851 * 5 4 3 7 7 C 1.38911 * 120.66268 * 359.96208 * 6 5 4 8 8 C 1.37617 * 119.71437 * 359.80878 * 7 6 5 9 9 C 1.50625 * 122.58683 * 180.68203 * 8 7 6 10 10 C 1.52742 * 110.58729 * 342.21720 * 9 8 7 11 11 C 1.53321 * 108.37159 * 51.10065 * 10 9 8 12 12 H 1.08993 * 109.71548 * 49.88231 * 11 10 9 13 13 N 1.46904 * 109.67838 * 170.41784 * 11 10 9 14 14 C 1.46846 * 110.99942 * 178.92862 * 13 11 10 15 15 C 1.53035 * 109.52744 * 174.16069 * 14 13 11 16 16 C 1.53123 * 109.27774 * 59.17321 * 15 14 13 17 17 C 1.50697 * 109.51980 * 182.44291 * 16 15 14 18 18 H 1.08008 * 119.99652 * 119.68706 * 17 16 15 19 19 C 1.37872 * 120.00289 * 299.68625 * 17 16 15 20 20 N 1.31513 * 119.99984 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 119.99890 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47080 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47086 * 120.00118 * 21 19 17 24 24 H 1.48501 * 109.46761 * 239.99639 * 21 19 17 25 25 C 1.53114 * 109.16198 * 302.35270 * 16 15 14 26 26 C 1.46844 * 111.00328 * 54.71708 * 13 11 10 27 27 C 1.50639 * 117.73668 * 179.76557 * 7 6 5 28 28 H 1.08995 * 109.47174 * 300.00275 * 1 2 3 29 29 H 1.08998 * 109.46773 * 59.99818 * 1 2 3 30 30 H 1.09001 * 109.46948 * 179.97438 * 1 2 3 31 31 H 1.08003 * 120.14090 * 0.02562 * 4 3 2 32 32 H 1.08007 * 120.08076 * 180.13813 * 5 4 3 33 33 H 1.08006 * 119.67077 * 179.97438 * 6 5 4 34 34 H 1.08991 * 109.25070 * 102.50992 * 9 8 7 35 35 H 1.09002 * 109.25263 * 221.93756 * 9 8 7 36 36 H 1.08991 * 109.69127 * 291.37511 * 10 9 8 37 37 H 1.09005 * 109.67685 * 170.81008 * 10 9 8 38 38 H 1.09008 * 109.46456 * 294.17536 * 14 13 11 39 39 H 1.09003 * 109.46474 * 54.14041 * 14 13 11 40 40 H 1.08995 * 109.50534 * 179.12351 * 15 14 13 41 41 H 1.09011 * 109.49854 * 299.24031 * 15 14 13 42 42 H 1.08998 * 109.51778 * 62.25946 * 16 15 14 43 43 H 0.97007 * 119.99717 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.50493 * 297.71120 * 25 16 15 45 45 H 1.08996 * 109.50191 * 177.59676 * 25 16 15 46 46 H 1.09000 * 109.46271 * 305.85568 * 26 13 11 47 47 H 1.09008 * 109.46154 * 65.83367 * 26 13 11 48 48 H 1.08999 * 109.25632 * 41.97534 * 27 7 6 49 49 H 1.09004 * 109.22024 * 282.53174 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2875 2.3695 -0.0005 5 6 1.9163 3.5993 -0.0011 6 6 3.2947 3.6657 -0.0035 7 6 4.0598 2.5062 -0.0047 8 6 3.4379 1.2786 0.0006 9 6 4.2035 -0.0185 0.0148 10 6 5.6517 0.2078 -0.4148 11 6 6.2305 1.3545 0.4223 12 1 6.0325 1.1748 1.4789 13 7 7.6795 1.4473 0.1993 14 6 8.2606 2.5546 0.9691 15 6 9.7843 2.5314 0.8282 16 6 10.1572 2.6625 -0.6511 17 6 11.6543 2.5801 -0.8022 18 1 12.0944 1.7951 -1.3995 19 6 12.4623 3.5065 -0.1779 20 7 11.9265 4.4625 0.5491 21 14 14.3181 3.4046 -0.3658 22 1 14.6654 2.2476 -1.2294 23 1 14.8220 4.6552 -0.9883 24 1 14.9421 3.2306 0.9705 25 6 9.5000 1.5252 -1.4378 26 6 7.9846 1.5776 -1.2312 27 6 5.5588 2.6554 -0.0129 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2091 2.3117 -0.0005 32 1 1.3306 4.5067 0.0008 33 1 3.7836 4.6287 -0.0044 34 1 4.1881 -0.4338 1.0224 35 1 3.7311 -0.7222 -0.6706 36 1 5.6842 0.4720 -1.4717 37 1 6.2311 -0.6997 -0.2447 38 1 7.8753 3.5015 0.5908 39 1 7.9913 2.4470 2.0199 40 1 10.2141 3.3626 1.3871 41 1 10.1715 1.5903 1.2191 42 1 9.8040 3.6207 -1.0321 43 1 12.4950 5.1142 0.9886 44 1 9.8828 0.5684 -1.0827 45 1 9.7269 1.6376 -2.4980 46 1 7.5149 0.7604 -1.7787 47 1 7.6008 2.5292 -1.5992 48 1 5.8443 3.4539 0.6719 49 1 5.8885 2.9108 -1.0200 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256649336.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:41 Heat of formation + Delta-G solvation = -25.789603 kcal Electronic energy + Delta-G solvation = -26816.478711 eV Core-core repulsion = 23321.585243 eV Total energy + Delta-G solvation = -3494.893468 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -40.75939 -39.14710 -37.61081 -35.54392 -33.40632 -31.88722 -31.03897 -30.08613 -29.29256 -27.91325 -27.39385 -25.43387 -23.71325 -22.86479 -22.04875 -21.65590 -21.08986 -19.21164 -18.24476 -17.71840 -16.60552 -16.33207 -16.03427 -15.73543 -15.24732 -14.94841 -14.47615 -14.20589 -13.97334 -13.71439 -13.65622 -13.44941 -13.04359 -12.88492 -12.61920 -12.41214 -12.13098 -12.06923 -11.87174 -11.80327 -11.58226 -11.27015 -11.14341 -11.05347 -10.88216 -10.56318 -10.54603 -10.39167 -10.29817 -10.08979 -9.84714 -9.38021 -8.87377 -8.68287 -8.64300 -8.25371 -8.21498 -7.63547 -5.93621 -3.98466 1.22900 1.33157 3.06859 3.32728 3.40829 3.45106 3.62067 4.37497 4.48693 4.57186 4.66791 4.83403 4.85552 4.91631 4.98134 5.08149 5.09853 5.18653 5.29239 5.36760 5.41059 5.55034 5.58918 5.61374 5.75405 5.82342 5.88410 5.94430 6.08189 6.09296 6.11188 6.19665 6.26291 6.33890 6.34931 6.44929 6.48956 6.60871 6.65032 6.68068 6.70683 6.92195 7.14243 7.22966 7.24147 7.50252 7.68498 7.77102 7.89035 8.10282 8.21118 8.53263 9.05560 9.65794 11.12541 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.033521 B = 0.002682 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.089890 B =10437.605480 C =10916.235742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.315 6.315 3 C 0.124 3.876 4 C -0.218 4.218 5 C -0.085 4.085 6 C -0.157 4.157 7 C -0.027 4.027 8 C -0.104 4.104 9 C -0.067 4.067 10 C -0.112 4.112 11 C 0.087 3.913 12 H 0.081 0.919 13 N -0.526 5.526 14 C 0.055 3.945 15 C -0.104 4.104 16 C 0.048 3.952 17 C -0.508 4.508 18 H 0.054 0.946 19 C 0.060 3.940 20 N -0.892 5.892 21 Si 0.888 3.112 22 H -0.274 1.274 23 H -0.286 1.286 24 H -0.285 1.285 25 C -0.107 4.107 26 C 0.054 3.946 27 C -0.118 4.118 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.025 0.975 39 H 0.054 0.946 40 H 0.091 0.909 41 H 0.042 0.958 42 H 0.019 0.981 43 H 0.258 0.742 44 H 0.056 0.944 45 H 0.048 0.952 46 H 0.061 0.939 47 H 0.025 0.975 48 H 0.079 0.921 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.319 -5.616 -0.249 23.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.228 6.228 3 C 0.079 3.921 4 C -0.236 4.236 5 C -0.103 4.103 6 C -0.175 4.175 7 C -0.028 4.028 8 C -0.105 4.105 9 C -0.105 4.105 10 C -0.150 4.150 11 C -0.023 4.023 12 H 0.099 0.901 13 N -0.249 5.249 14 C -0.072 4.072 15 C -0.142 4.142 16 C 0.029 3.971 17 C -0.546 4.546 18 H 0.073 0.927 19 C -0.141 4.141 20 N -0.532 5.532 21 Si 0.717 3.283 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.211 1.211 25 C -0.144 4.144 26 C -0.074 4.074 27 C -0.156 4.156 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.043 0.957 39 H 0.072 0.928 40 H 0.110 0.890 41 H 0.061 0.939 42 H 0.038 0.962 43 H 0.068 0.932 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.080 0.920 47 H 0.043 0.957 48 H 0.098 0.902 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.938 -6.101 0.025 23.736 hybrid contribution 0.187 1.159 -0.307 1.213 sum -22.751 -4.942 -0.282 23.284 Atomic orbital electron populations 1.23026 0.78748 1.03737 1.01190 1.86063 1.20992 1.27049 1.88717 1.18995 0.91797 0.84056 0.97297 1.21082 0.99654 0.92518 1.10381 1.20795 0.94536 0.96864 0.98122 1.21128 0.93742 0.98193 1.04483 1.19489 0.95735 0.91434 0.96148 1.19010 0.89979 0.95657 1.05847 1.20261 0.94498 0.93526 1.02192 1.21664 0.94387 0.99255 0.99680 1.21717 0.87849 0.92906 0.99783 0.90131 1.62285 1.08447 1.45215 1.08945 1.22279 0.98589 0.90399 0.95911 1.21663 0.89562 1.02011 1.01010 1.18680 0.94563 0.92597 0.91224 1.21260 0.91387 1.12139 1.29837 0.92748 1.24969 0.98401 0.95371 0.95335 1.69890 1.34649 1.15812 1.32830 0.86595 0.86144 0.77811 0.77787 1.19848 1.21197 1.21107 1.21678 0.91986 1.01294 0.99480 1.22209 0.98455 0.98646 0.88044 1.21294 0.90230 1.00962 1.03120 0.92801 0.92831 0.88364 0.85791 0.86022 0.86026 0.90788 0.90629 0.91689 0.90325 0.95691 0.92763 0.89044 0.93868 0.96242 0.93221 0.92538 0.93363 0.92027 0.95696 0.90218 0.89859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.40 9.53 -19.42 -0.19 -3.59 16 3 C 0.12 1.47 6.65 -39.08 -0.26 1.21 16 4 C -0.22 -2.28 9.02 -39.54 -0.36 -2.64 16 5 C -0.09 -0.90 10.04 -39.71 -0.40 -1.30 16 6 C -0.16 -1.87 9.60 -39.42 -0.38 -2.25 16 7 C -0.03 -0.36 5.74 -104.63 -0.60 -0.96 16 8 C -0.10 -1.34 5.75 -104.47 -0.60 -1.94 16 9 C -0.07 -0.80 5.28 -28.05 -0.15 -0.95 16 10 C -0.11 -1.44 4.51 -26.70 -0.12 -1.56 16 11 C 0.09 1.26 2.34 -67.68 -0.16 1.10 16 12 H 0.08 1.18 8.10 -51.93 -0.42 0.76 16 13 N -0.53 -9.20 4.69 -226.65 -1.06 -10.26 16 14 C 0.06 1.08 4.90 -3.84 -0.02 1.06 16 15 C -0.10 -2.46 5.12 -26.65 -0.14 -2.60 16 16 C 0.05 1.19 2.16 -91.65 -0.20 0.99 16 17 C -0.51 -14.02 8.56 -34.44 -0.29 -14.32 16 18 H 0.05 1.50 7.75 -52.48 -0.41 1.09 16 19 C 0.06 1.66 5.31 -17.82 -0.09 1.57 16 20 N -0.89 -25.52 11.37 55.43 0.63 -24.88 16 21 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 C -0.11 -2.24 5.32 -26.66 -0.14 -2.39 16 26 C 0.05 0.96 4.69 -3.84 -0.02 0.94 16 27 C -0.12 -1.63 4.23 -28.05 -0.12 -1.75 16 28 H 0.05 0.31 7.65 -51.93 -0.40 -0.09 16 29 H 0.05 0.31 7.65 -51.93 -0.40 -0.09 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.12 0.99 6.27 -52.48 -0.33 0.66 16 32 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 33 H 0.12 1.31 8.05 -52.48 -0.42 0.89 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.86 7.76 -51.93 -0.40 0.46 16 36 H 0.06 0.85 6.80 -51.93 -0.35 0.50 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.02 0.49 6.85 -51.92 -0.36 0.13 16 39 H 0.05 0.99 8.12 -51.93 -0.42 0.56 16 40 H 0.09 2.40 6.17 -51.93 -0.32 2.08 16 41 H 0.04 1.05 8.14 -51.92 -0.42 0.63 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.06 0.98 6.13 -51.93 -0.32 0.66 16 47 H 0.02 0.45 6.53 -51.92 -0.34 0.11 16 48 H 0.08 1.13 7.03 -51.93 -0.36 0.77 16 49 H 0.08 1.22 6.21 -51.93 -0.32 0.90 16 LS Contribution 365.89 15.07 5.51 5.51 Total: -1.00 -29.34 365.89 -11.27 -40.61 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -8.09 Total: 0.79 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: -3.05 Total: -24.60 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: -0.43 Total: -35.15 kcal Atomic # 8 Polarization: -3.40 SS G_CDS: -0.19 Total: -3.59 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.34 -11.27 -40.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256649336.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.816 kcal (2) G-P(sol) polarization free energy of solvation -29.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds