Wall clock time and date at job start Tue Mar 31 2020 12:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35899 * 116.99755 * 2 1 4 4 C 1.38475 * 119.79265 * 359.97438 * 3 2 1 5 5 C 1.38121 * 119.71034 * 180.02562 * 4 3 2 6 6 C 1.37998 * 119.83776 * 0.11851 * 5 4 3 7 7 C 1.38911 * 120.66268 * 359.96208 * 6 5 4 8 8 C 1.37617 * 119.71437 * 359.80878 * 7 6 5 9 9 C 1.50625 * 122.58683 * 180.68203 * 8 7 6 10 10 C 1.52742 * 110.58729 * 342.21720 * 9 8 7 11 11 C 1.53321 * 108.37159 * 51.10065 * 10 9 8 12 12 H 1.08993 * 109.71548 * 49.88231 * 11 10 9 13 13 N 1.46904 * 109.67838 * 170.41784 * 11 10 9 14 14 C 1.46846 * 110.99942 * 178.92862 * 13 11 10 15 15 C 1.53035 * 109.52744 * 174.16069 * 14 13 11 16 16 C 1.53123 * 109.27774 * 59.17321 * 15 14 13 17 17 C 1.50697 * 109.51980 * 182.44291 * 16 15 14 18 18 H 1.08008 * 119.99652 * 119.68706 * 17 16 15 19 19 C 1.37872 * 120.00289 * 299.68625 * 17 16 15 20 20 N 1.31513 * 119.99984 * 359.97438 * 19 17 16 21 21 Si 1.86809 * 119.99890 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47080 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47086 * 120.00118 * 21 19 17 24 24 H 1.48501 * 109.46761 * 239.99639 * 21 19 17 25 25 C 1.53114 * 109.16198 * 302.35270 * 16 15 14 26 26 C 1.46844 * 111.00328 * 54.71708 * 13 11 10 27 27 C 1.50639 * 117.73668 * 179.76557 * 7 6 5 28 28 H 1.08995 * 109.47174 * 300.00275 * 1 2 3 29 29 H 1.08998 * 109.46773 * 59.99818 * 1 2 3 30 30 H 1.09001 * 109.46948 * 179.97438 * 1 2 3 31 31 H 1.08003 * 120.14090 * 0.02562 * 4 3 2 32 32 H 1.08007 * 120.08076 * 180.13813 * 5 4 3 33 33 H 1.08006 * 119.67077 * 179.97438 * 6 5 4 34 34 H 1.08991 * 109.25070 * 102.50992 * 9 8 7 35 35 H 1.09002 * 109.25263 * 221.93756 * 9 8 7 36 36 H 1.08991 * 109.69127 * 291.37511 * 10 9 8 37 37 H 1.09005 * 109.67685 * 170.81008 * 10 9 8 38 38 H 1.09008 * 109.46456 * 294.17536 * 14 13 11 39 39 H 1.09003 * 109.46474 * 54.14041 * 14 13 11 40 40 H 1.08995 * 109.50534 * 179.12351 * 15 14 13 41 41 H 1.09011 * 109.49854 * 299.24031 * 15 14 13 42 42 H 1.08998 * 109.51778 * 62.25946 * 16 15 14 43 43 H 0.97007 * 119.99717 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.50493 * 297.71120 * 25 16 15 45 45 H 1.08996 * 109.50191 * 177.59676 * 25 16 15 46 46 H 1.09000 * 109.46271 * 305.85568 * 26 13 11 47 47 H 1.09008 * 109.46154 * 65.83367 * 26 13 11 48 48 H 1.08999 * 109.25632 * 41.97534 * 27 7 6 49 49 H 1.09004 * 109.22024 * 282.53174 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2875 2.3695 -0.0005 5 6 1.9163 3.5993 -0.0011 6 6 3.2947 3.6657 -0.0035 7 6 4.0598 2.5062 -0.0047 8 6 3.4379 1.2786 0.0006 9 6 4.2035 -0.0185 0.0148 10 6 5.6517 0.2078 -0.4148 11 6 6.2305 1.3545 0.4223 12 1 6.0325 1.1748 1.4789 13 7 7.6795 1.4473 0.1993 14 6 8.2606 2.5546 0.9691 15 6 9.7843 2.5314 0.8282 16 6 10.1572 2.6625 -0.6511 17 6 11.6543 2.5801 -0.8022 18 1 12.0944 1.7951 -1.3995 19 6 12.4623 3.5065 -0.1779 20 7 11.9265 4.4625 0.5491 21 14 14.3181 3.4046 -0.3658 22 1 14.6654 2.2476 -1.2294 23 1 14.8220 4.6552 -0.9883 24 1 14.9421 3.2306 0.9705 25 6 9.5000 1.5252 -1.4378 26 6 7.9846 1.5776 -1.2312 27 6 5.5588 2.6554 -0.0129 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2091 2.3117 -0.0005 32 1 1.3306 4.5067 0.0008 33 1 3.7836 4.6287 -0.0044 34 1 4.1881 -0.4338 1.0224 35 1 3.7311 -0.7222 -0.6706 36 1 5.6842 0.4720 -1.4717 37 1 6.2311 -0.6997 -0.2447 38 1 7.8753 3.5015 0.5908 39 1 7.9913 2.4470 2.0199 40 1 10.2141 3.3626 1.3871 41 1 10.1715 1.5903 1.2191 42 1 9.8040 3.6207 -1.0321 43 1 12.4950 5.1142 0.9886 44 1 9.8828 0.5684 -1.0827 45 1 9.7269 1.6376 -2.4980 46 1 7.5149 0.7604 -1.7787 47 1 7.6008 2.5292 -1.5992 48 1 5.8443 3.4539 0.6719 49 1 5.8885 2.9108 -1.0200 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256649336.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:40 Heat of formation + Delta-G solvation = -40.946867 kcal Electronic energy + Delta-G solvation = -26817.135980 eV Core-core repulsion = 23321.585243 eV Total energy + Delta-G solvation = -3495.550736 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.67970 -40.33387 -38.67277 -36.84870 -35.00467 -33.29811 -32.30448 -31.59615 -30.50637 -29.05417 -28.06966 -27.17763 -24.86678 -24.38635 -23.35358 -22.75450 -22.35787 -20.67014 -19.58478 -18.60479 -18.42460 -17.46791 -16.92643 -16.62800 -16.56685 -16.28569 -15.86716 -15.60863 -15.08776 -15.02681 -14.68700 -14.59225 -14.36548 -14.22636 -14.06170 -13.76286 -13.64169 -13.08168 -12.99810 -12.91559 -12.79277 -12.66231 -12.54919 -12.39040 -12.19838 -12.13245 -11.93335 -11.85265 -11.67520 -11.44840 -11.37838 -11.22083 -10.71634 -10.62147 -10.34690 -9.59254 -9.06917 -9.04288 -8.06481 -6.19421 0.35748 0.47294 1.40173 1.42153 1.53519 2.39145 2.44791 2.75372 3.03740 3.20454 3.67053 3.82717 3.85929 3.99853 4.10826 4.17329 4.25412 4.31945 4.32978 4.41840 4.42195 4.45504 4.49111 4.58349 4.58532 4.64595 4.70279 4.76519 4.80267 4.83593 4.90837 4.95398 4.99165 5.03634 5.11868 5.18719 5.24415 5.29339 5.32055 5.42595 5.44952 5.52966 5.60555 5.65943 5.70117 5.82575 6.03739 6.06994 6.34697 6.39322 6.43688 6.48527 6.92500 7.48163 8.98152 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.033521 B = 0.002682 C = 0.002564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.089890 B =10437.605480 C =10916.235742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.330 6.330 3 C 0.116 3.884 4 C -0.216 4.216 5 C -0.084 4.084 6 C -0.172 4.172 7 C -0.043 4.043 8 C -0.123 4.123 9 C -0.059 4.059 10 C -0.105 4.105 11 C 0.089 3.911 12 H 0.082 0.918 13 N -0.530 5.530 14 C 0.068 3.932 15 C -0.095 4.095 16 C 0.045 3.955 17 C -0.531 4.531 18 H 0.050 0.950 19 C 0.011 3.989 20 N -0.918 5.918 21 Si 0.952 3.048 22 H -0.268 1.268 23 H -0.281 1.281 24 H -0.280 1.280 25 C -0.100 4.100 26 C 0.063 3.937 27 C -0.108 4.108 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.117 0.883 31 H 0.151 0.849 32 H 0.148 0.852 33 H 0.126 0.874 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.020 0.980 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.029 0.971 42 H -0.013 1.013 43 H 0.259 0.741 44 H 0.051 0.949 45 H 0.051 0.949 46 H 0.088 0.912 47 H 0.022 0.978 48 H 0.070 0.930 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.398 -6.533 -0.494 26.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.244 6.244 3 C 0.071 3.929 4 C -0.235 4.235 5 C -0.102 4.102 6 C -0.190 4.190 7 C -0.044 4.044 8 C -0.124 4.124 9 C -0.097 4.097 10 C -0.142 4.142 11 C -0.019 4.019 12 H 0.100 0.900 13 N -0.253 5.253 14 C -0.060 4.060 15 C -0.133 4.133 16 C 0.026 3.974 17 C -0.569 4.569 18 H 0.068 0.932 19 C -0.187 4.187 20 N -0.558 5.558 21 Si 0.778 3.222 22 H -0.193 1.193 23 H -0.207 1.207 24 H -0.206 1.206 25 C -0.138 4.138 26 C -0.065 4.065 27 C -0.147 4.147 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.136 0.864 31 H 0.168 0.832 32 H 0.166 0.834 33 H 0.144 0.856 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.082 0.918 37 H 0.099 0.901 38 H 0.038 0.962 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.048 0.952 42 H 0.006 0.994 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.106 0.894 47 H 0.041 0.959 48 H 0.089 0.911 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -25.037 -7.030 -0.225 26.006 hybrid contribution 0.737 1.442 -0.229 1.636 sum -24.300 -5.588 -0.454 24.938 Atomic orbital electron populations 1.23327 0.76649 1.05458 1.02132 1.86040 1.23189 1.26633 1.88537 1.19116 0.91700 0.85010 0.97104 1.21419 1.01034 0.91942 1.09063 1.21120 0.94106 0.98095 0.96882 1.21292 0.94663 0.98052 1.04976 1.19433 0.95002 0.92252 0.97693 1.19144 0.90914 0.95631 1.06668 1.20181 0.93548 0.93502 1.02424 1.21598 0.95073 0.98404 0.99161 1.21747 0.85743 0.94101 1.00326 0.90004 1.62228 1.10682 1.43964 1.08438 1.22018 0.95667 0.91105 0.97163 1.21422 0.92530 0.99809 0.99569 1.18649 0.93721 0.92482 0.92506 1.21622 0.93107 1.12198 1.29956 0.93193 1.25736 1.02836 0.95081 0.95045 1.70026 1.36119 1.16304 1.33314 0.85597 0.80798 0.77945 0.77855 1.19251 1.20710 1.20634 1.21549 0.94113 0.99184 0.98918 1.22108 0.96098 0.99634 0.88647 1.21129 0.91317 1.00107 1.02148 0.91806 0.91826 0.86439 0.83168 0.83448 0.85642 0.90556 0.90006 0.91803 0.90075 0.96181 0.91355 0.92142 0.95175 0.99437 0.93151 0.93059 0.93059 0.89354 0.95945 0.91114 0.90940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -6.38 9.53 -92.41 -0.88 -7.26 16 3 C 0.12 2.53 6.65 22.60 0.15 2.68 16 4 C -0.22 -3.94 9.02 22.30 0.20 -3.74 16 5 C -0.08 -1.57 10.04 22.18 0.22 -1.35 16 6 C -0.17 -3.90 9.60 22.37 0.21 -3.68 16 7 C -0.04 -1.09 5.74 -19.87 -0.11 -1.20 16 8 C -0.12 -2.99 5.75 -19.76 -0.11 -3.10 16 9 C -0.06 -1.32 5.28 29.74 0.16 -1.17 16 10 C -0.10 -2.54 4.51 30.62 0.14 -2.40 16 11 C 0.09 2.52 2.34 44.93 0.10 2.62 16 12 H 0.08 2.32 8.10 -2.39 -0.02 2.30 16 13 N -0.53 -18.33 4.69 -871.00 -4.09 -22.42 16 14 C 0.07 2.69 4.90 86.33 0.42 3.11 16 15 C -0.09 -4.64 5.12 30.65 0.16 -4.48 16 16 C 0.04 2.31 2.16 -11.46 -0.02 2.29 16 17 C -0.53 -30.05 8.56 25.60 0.22 -29.83 16 18 H 0.05 2.80 7.75 -2.91 -0.02 2.77 16 19 C 0.01 0.63 5.31 84.65 0.45 1.08 16 20 N -0.92 -53.92 11.37 21.45 0.24 -53.68 16 21 Si 0.95 44.56 29.54 68.60 2.03 46.58 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 24 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 25 C -0.10 -4.24 5.32 30.64 0.16 -4.08 16 26 C 0.06 2.20 4.69 86.32 0.40 2.61 16 27 C -0.11 -2.99 4.23 29.74 0.13 -2.86 16 28 H 0.06 0.54 7.65 -2.39 -0.02 0.52 16 29 H 0.06 0.53 7.65 -2.39 -0.02 0.52 16 30 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.15 1.85 6.27 -2.91 -0.02 1.83 16 32 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 33 H 0.13 2.64 8.05 -2.91 -0.02 2.61 16 34 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.08 1.72 7.76 -2.39 -0.02 1.71 16 36 H 0.06 1.57 6.80 -2.39 -0.02 1.55 16 37 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 38 H 0.02 0.81 6.85 -2.38 -0.02 0.79 16 39 H 0.07 2.48 8.12 -2.39 -0.02 2.47 16 40 H 0.06 3.32 6.17 -2.39 -0.01 3.30 16 41 H 0.03 1.50 8.14 -2.38 -0.02 1.48 16 42 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 43 H 0.26 14.46 8.31 -92.70 -0.77 13.69 16 44 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.09 2.66 6.13 -2.39 -0.01 2.65 16 47 H 0.02 0.81 6.53 -2.38 -0.02 0.79 16 48 H 0.07 2.03 7.03 -2.39 -0.02 2.02 16 49 H 0.07 2.13 6.21 -2.39 -0.01 2.12 16 Total: -1.00 -64.18 365.89 2.21 -61.97 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.92 Total: 17.01 kcal Atomic # 6 Polarization: -46.20 SS G_CDS: 3.99 Total: -42.21 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -3.85 Total: -76.10 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.88 Total: -7.26 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -64.18 2.21 -61.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256649336.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.019 kcal (2) G-P(sol) polarization free energy of solvation -64.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds