Wall clock time and date at job start Tue Mar 31 2020 12:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99870 * 2 1 4 4 H 1.48500 * 109.46699 * 174.66444 * 3 2 1 5 5 H 1.48500 * 109.46997 * 294.66170 * 3 2 1 6 6 H 1.48498 * 109.47108 * 54.66541 * 3 2 1 7 7 C 1.37875 * 120.00066 * 180.02562 * 2 1 3 8 8 C 1.51268 * 120.85161 * 349.19463 * 7 2 1 9 9 C 1.53229 * 108.54033 * 231.33114 * 8 7 2 10 10 C 1.52965 * 109.40057 * 305.37040 * 9 8 7 11 11 H 1.08993 * 109.41437 * 303.56037 * 10 9 8 12 12 N 1.46902 * 109.40803 * 183.70236 * 10 9 8 13 13 C 1.46905 * 110.99468 * 154.86237 * 12 10 9 14 14 C 1.53122 * 109.52167 * 155.00133 * 13 12 10 15 15 C 1.53036 * 109.27691 * 177.55559 * 14 13 12 16 16 N 1.46847 * 109.52605 * 300.81806 * 15 14 13 17 17 C 1.39161 * 111.00293 * 185.83800 * 16 15 14 18 18 C 1.39479 * 120.86701 * 180.02562 * 17 16 15 19 19 C 1.37894 * 119.06469 * 179.97438 * 18 17 16 20 20 N 1.31995 * 120.84584 * 0.27512 * 19 18 17 21 21 C 1.31990 * 121.90875 * 359.42825 * 20 19 18 22 22 C 1.37890 * 120.84401 * 0.57432 * 21 20 19 23 23 C 1.46847 * 111.19357 * 61.74251 * 16 15 14 24 24 C 1.53041 * 109.52730 * 298.25601 * 23 16 15 25 25 C 1.52959 * 109.75787 * 63.63752 * 10 9 8 26 26 C 1.51276 * 120.85064 * 169.17686 * 7 2 1 27 27 H 0.97000 * 120.00098 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.62614 * 111.61303 * 8 7 2 29 29 H 1.09008 * 109.62160 * 351.04509 * 8 7 2 30 30 H 1.09000 * 109.48451 * 185.39106 * 9 8 7 31 31 H 1.09001 * 109.49126 * 65.35323 * 9 8 7 32 32 H 1.00895 * 111.00052 * 30.90920 * 12 10 9 33 33 H 1.08997 * 109.52858 * 34.86987 * 13 12 10 34 34 H 1.08998 * 109.50408 * 57.61768 * 14 13 12 35 35 H 1.09001 * 109.49784 * 297.49708 * 14 13 12 36 36 H 1.09000 * 109.46200 * 180.80258 * 15 14 13 37 37 H 1.09001 * 109.45328 * 60.82605 * 15 14 13 38 38 H 1.07991 * 120.46359 * 359.95389 * 18 17 16 39 39 H 1.08000 * 119.57598 * 179.97438 * 19 18 17 40 40 H 1.08005 * 119.58208 * 180.28921 * 21 20 19 41 41 H 1.08005 * 120.47277 * 179.74829 * 22 21 20 42 42 H 1.09000 * 109.46943 * 58.27918 * 23 16 15 43 43 H 1.09007 * 109.46395 * 178.24424 * 23 16 15 44 44 H 1.09000 * 109.50263 * 299.24165 * 24 23 16 45 45 H 1.08996 * 109.50918 * 179.12319 * 24 23 16 46 46 H 1.08990 * 109.48605 * 56.34072 * 25 10 9 47 47 H 1.09005 * 109.48114 * 176.38660 * 25 10 9 48 48 H 1.09000 * 109.62444 * 248.38640 * 26 7 2 49 49 H 1.08997 * 109.62167 * 8.76116 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7038 1.3494 0.1302 5 1 1.9906 2.3385 -1.2724 6 1 1.7953 2.4513 1.1421 7 6 2.0045 -1.1940 -0.0005 8 6 1.2877 -2.5037 0.2423 9 6 2.0266 -3.2660 1.3473 10 6 3.4997 -3.4155 0.9637 11 1 3.5736 -3.9113 -0.0041 12 7 4.1893 -4.2221 1.9795 13 6 5.3720 -4.8837 1.4124 14 6 6.3793 -5.1754 2.5282 15 6 7.5817 -5.9187 1.9417 16 7 7.1304 -7.1727 1.3252 17 6 8.2126 -7.9361 0.8977 18 6 8.0175 -9.1714 0.2802 19 6 9.1165 -9.8966 -0.1292 20 7 10.3394 -9.4380 0.0617 21 6 10.5653 -8.2717 0.6369 22 6 9.5207 -7.4855 1.0751 23 6 6.1985 -6.9156 0.2198 24 6 4.9547 -6.2021 0.7548 25 6 4.1547 -2.0358 0.8795 26 6 3.4971 -1.2279 -0.2444 27 1 -0.4850 0.8400 0.0004 28 1 1.2865 -3.0957 -0.6729 29 1 0.2623 -2.3072 0.5558 30 1 1.5805 -4.2531 1.4688 31 1 1.9490 -2.7142 2.2841 32 1 3.5621 -4.8953 2.3935 33 1 5.8313 -4.2336 0.6678 34 1 5.9073 -5.7928 3.2924 35 1 6.7125 -4.2372 2.9719 36 1 8.2943 -6.1405 2.7362 37 1 8.0612 -5.2951 1.1872 38 1 7.0198 -9.5546 0.1253 39 1 8.9750 -10.8544 -0.6079 40 1 11.5814 -7.9308 0.7702 41 1 9.7125 -6.5340 1.5487 42 1 6.6847 -6.2875 -0.5266 43 1 5.9063 -7.8615 -0.2365 44 1 4.4603 -6.8356 1.4912 45 1 4.2702 -5.9975 -0.0683 46 1 4.0257 -1.5136 1.8274 47 1 5.2181 -2.1504 0.6691 48 1 3.7004 -1.7017 -1.2048 49 1 3.8907 -0.2115 -0.2471 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001256849580.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:38:00 Heat of formation + Delta-G solvation = 30.783787 kcal Electronic energy + Delta-G solvation = -26403.042114 eV Core-core repulsion = 22942.894604 eV Total energy + Delta-G solvation = -3460.147511 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.201 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.01599 -39.13542 -37.47307 -35.16426 -32.77858 -32.00839 -31.24930 -30.81195 -29.79356 -29.19299 -26.57050 -24.62854 -24.01537 -22.48832 -22.19086 -21.55491 -21.18941 -19.93222 -19.12665 -18.10298 -16.59261 -16.19015 -15.96300 -15.56401 -15.09582 -15.00638 -14.63187 -14.46593 -14.25555 -14.00912 -13.86194 -13.64222 -13.29555 -13.21000 -12.65494 -12.55890 -12.31234 -12.08099 -11.92946 -11.68591 -11.45273 -11.35902 -11.06064 -10.95279 -10.80376 -10.55832 -10.45702 -10.26497 -10.11704 -9.95356 -9.75269 -9.45473 -9.35824 -8.91743 -8.61995 -8.49826 -8.40020 -7.95639 -6.11116 -3.99281 0.88589 1.01072 3.25367 3.26043 3.36309 3.36558 3.61361 4.21867 4.27198 4.38918 4.45823 4.54600 4.69468 4.73928 4.87541 4.95528 4.98035 5.10500 5.15096 5.16592 5.30859 5.42642 5.45617 5.48419 5.51716 5.57907 5.62416 5.75439 5.84274 5.84992 5.95353 6.10528 6.18627 6.25371 6.31591 6.54217 6.61368 6.68508 6.78151 6.82343 6.84511 6.96098 7.04866 7.17104 7.46384 7.55718 7.66799 7.75423 7.77037 7.80551 7.86416 8.39731 8.97083 9.55465 10.98658 Molecular weight = 315.20amu Principal moments of inertia in cm(-1) A = 0.029239 B = 0.002487 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.410772 B =11255.691118 C =11565.204762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.075 3.925 3 Si 0.878 3.122 4 H -0.256 1.256 5 H -0.284 1.284 6 H -0.286 1.286 7 C -0.485 4.485 8 C 0.013 3.987 9 C -0.109 4.109 10 C 0.101 3.899 11 H 0.031 0.969 12 N -0.684 5.684 13 C 0.086 3.914 14 C -0.104 4.104 15 C 0.050 3.950 16 N -0.485 5.485 17 C 0.161 3.839 18 C -0.199 4.199 19 C 0.119 3.881 20 N -0.511 5.511 21 C 0.122 3.878 22 C -0.229 4.229 23 C 0.065 3.935 24 C -0.148 4.148 25 C -0.090 4.090 26 C -0.027 4.027 27 H 0.263 0.737 28 H 0.001 0.999 29 H 0.054 0.946 30 H 0.026 0.974 31 H 0.056 0.944 32 H 0.335 0.665 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.049 0.951 38 H 0.135 0.865 39 H 0.155 0.845 40 H 0.154 0.846 41 H 0.138 0.862 42 H 0.047 0.953 43 H 0.081 0.919 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.055 0.945 47 H 0.025 0.975 48 H 0.012 0.988 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.008 -15.624 2.563 22.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.127 4.127 3 Si 0.706 3.294 4 H -0.181 1.181 5 H -0.210 1.210 6 H -0.212 1.212 7 C -0.504 4.504 8 C -0.025 4.025 9 C -0.147 4.147 10 C -0.007 4.007 11 H 0.049 0.951 12 N -0.313 5.313 13 C -0.024 4.024 14 C -0.143 4.143 15 C -0.076 4.076 16 N -0.199 5.199 17 C 0.054 3.946 18 C -0.222 4.222 19 C -0.038 4.038 20 N -0.222 5.222 21 C -0.035 4.035 22 C -0.252 4.252 23 C -0.060 4.060 24 C -0.188 4.188 25 C -0.129 4.129 26 C -0.065 4.065 27 H 0.073 0.927 28 H 0.019 0.981 29 H 0.072 0.928 30 H 0.045 0.955 31 H 0.075 0.925 32 H 0.153 0.847 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.067 0.933 38 H 0.153 0.847 39 H 0.172 0.828 40 H 0.171 0.829 41 H 0.156 0.844 42 H 0.065 0.935 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.074 0.926 47 H 0.044 0.956 48 H 0.030 0.970 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 16.540 -15.658 2.925 22.963 hybrid contribution -0.449 1.062 -0.646 1.322 sum 16.090 -14.597 2.278 21.844 Atomic orbital electron populations 1.69898 1.06240 1.26805 1.49638 1.24850 0.94621 0.98604 0.94658 0.86761 0.81151 0.83751 0.77724 1.18061 1.21037 1.21220 1.20017 0.90874 0.91848 1.47653 1.19332 0.97358 0.93561 0.92211 1.21825 0.93360 0.97945 1.01611 1.21447 0.94139 0.93751 0.91361 0.95076 1.60714 1.09669 1.26975 1.33990 1.21629 0.92761 0.92621 0.95430 1.21600 0.94316 1.00059 0.98305 1.22371 0.98279 0.88199 0.98799 1.58735 1.13630 1.18684 1.28891 1.19325 0.90205 0.93536 0.91580 1.21813 1.01150 0.95066 1.04171 1.22598 0.87295 0.98909 0.94948 1.67722 1.24351 1.14568 1.15579 1.22587 0.99137 0.89448 0.92323 1.22310 0.92802 1.02817 1.07255 1.22194 0.92695 1.00793 0.90328 1.22419 0.96741 0.97961 1.01657 1.21545 0.95859 0.94845 1.00622 1.19981 0.96196 0.96540 0.93777 0.92723 0.98055 0.92765 0.95518 0.92483 0.84711 0.90638 0.91000 0.90181 0.89824 0.93284 0.84690 0.82773 0.82905 0.84434 0.93463 0.90014 0.90770 0.90709 0.92626 0.95605 0.96963 0.94168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.54 12.82 55.43 0.71 -24.82 16 2 C 0.08 2.05 5.44 -17.82 -0.10 1.95 16 3 Si 0.88 20.76 27.95 -169.99 -4.75 16.01 16 4 H -0.26 -5.78 5.57 56.52 0.31 -5.46 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.48 -12.66 5.48 -98.92 -0.54 -13.20 16 8 C 0.01 0.33 5.93 -27.49 -0.16 0.16 16 9 C -0.11 -2.23 5.24 -26.63 -0.14 -2.37 16 10 C 0.10 1.85 2.21 -67.75 -0.15 1.70 16 11 H 0.03 0.59 7.16 -51.93 -0.37 0.22 16 12 N -0.68 -10.19 6.06 -99.65 -0.60 -10.79 16 13 C 0.09 1.07 2.33 -67.58 -0.16 0.91 16 14 C -0.10 -1.11 5.70 -26.65 -0.15 -1.26 16 15 C 0.05 0.47 4.16 -3.83 -0.02 0.45 16 16 N -0.49 -4.80 4.70 -170.95 -0.80 -5.60 16 17 C 0.16 1.59 5.65 -83.61 -0.47 1.12 16 18 C -0.20 -1.82 9.25 -39.25 -0.36 -2.18 16 19 C 0.12 1.08 11.17 -17.61 -0.20 0.88 16 20 N -0.51 -5.42 10.36 -13.35 -0.14 -5.56 16 21 C 0.12 1.12 11.17 -17.61 -0.20 0.92 16 22 C -0.23 -2.07 8.88 -39.25 -0.35 -2.42 16 23 C 0.07 0.64 5.26 -3.83 -0.02 0.62 16 24 C -0.15 -1.62 5.34 -26.65 -0.14 -1.77 16 25 C -0.09 -1.82 5.43 -26.63 -0.14 -1.97 16 26 C -0.03 -0.62 5.66 -27.47 -0.16 -0.78 16 27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.00 0.03 8.14 -51.93 -0.42 -0.40 16 29 H 0.05 1.46 7.19 -51.92 -0.37 1.09 16 30 H 0.03 0.48 8.05 -51.93 -0.42 0.07 16 31 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.33 4.69 8.01 -39.29 -0.31 4.38 16 33 H 0.08 1.04 7.09 -51.93 -0.37 0.68 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.69 7.02 -51.93 -0.36 0.33 16 37 H 0.05 0.45 7.77 -51.93 -0.40 0.05 16 38 H 0.14 1.04 7.24 -52.49 -0.38 0.66 16 39 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 41 H 0.14 1.03 5.96 -52.48 -0.31 0.72 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.08 0.72 6.78 -51.92 -0.35 0.37 16 44 H 0.07 0.81 8.10 -51.93 -0.42 0.39 16 45 H 0.07 0.88 7.49 -51.93 -0.39 0.50 16 46 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 47 H 0.03 0.47 7.38 -51.93 -0.38 0.09 16 48 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 49 H 0.04 0.93 4.35 -51.93 -0.23 0.71 16 LS Contribution 366.98 15.07 5.53 5.53 Total: -1.00 -28.91 366.98 -11.62 -40.52 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -8.10 Total: 1.93 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -3.46 Total: -17.21 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.83 Total: -46.78 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.75 Total: 16.01 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -28.91 -11.62 -40.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256849580.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.308 kcal (2) G-P(sol) polarization free energy of solvation -28.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds