Wall clock time and date at job start Tue Mar 31 2020 12:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99870 * 2 1 4 4 H 1.48500 * 109.46699 * 174.66444 * 3 2 1 5 5 H 1.48500 * 109.46997 * 294.66170 * 3 2 1 6 6 H 1.48498 * 109.47108 * 54.66541 * 3 2 1 7 7 C 1.37875 * 120.00066 * 180.02562 * 2 1 3 8 8 C 1.51268 * 120.85161 * 349.19463 * 7 2 1 9 9 C 1.53229 * 108.54033 * 231.33114 * 8 7 2 10 10 C 1.52965 * 109.40057 * 305.37040 * 9 8 7 11 11 H 1.08993 * 109.41437 * 303.56037 * 10 9 8 12 12 N 1.46902 * 109.40803 * 183.70236 * 10 9 8 13 13 C 1.46905 * 110.99468 * 154.86237 * 12 10 9 14 14 C 1.53122 * 109.52167 * 155.00133 * 13 12 10 15 15 C 1.53036 * 109.27691 * 177.55559 * 14 13 12 16 16 N 1.46847 * 109.52605 * 300.81806 * 15 14 13 17 17 C 1.39161 * 111.00293 * 185.83800 * 16 15 14 18 18 C 1.39479 * 120.86701 * 180.02562 * 17 16 15 19 19 C 1.37894 * 119.06469 * 179.97438 * 18 17 16 20 20 N 1.31995 * 120.84584 * 0.27512 * 19 18 17 21 21 C 1.31990 * 121.90875 * 359.42825 * 20 19 18 22 22 C 1.37890 * 120.84401 * 0.57432 * 21 20 19 23 23 C 1.46847 * 111.19357 * 61.74251 * 16 15 14 24 24 C 1.53041 * 109.52730 * 298.25601 * 23 16 15 25 25 C 1.52959 * 109.75787 * 63.63752 * 10 9 8 26 26 C 1.51276 * 120.85064 * 169.17686 * 7 2 1 27 27 H 0.97000 * 120.00098 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.62614 * 111.61303 * 8 7 2 29 29 H 1.09008 * 109.62160 * 351.04509 * 8 7 2 30 30 H 1.09000 * 109.48451 * 185.39106 * 9 8 7 31 31 H 1.09001 * 109.49126 * 65.35323 * 9 8 7 32 32 H 1.00895 * 111.00052 * 30.90920 * 12 10 9 33 33 H 1.08997 * 109.52858 * 34.86987 * 13 12 10 34 34 H 1.08998 * 109.50408 * 57.61768 * 14 13 12 35 35 H 1.09001 * 109.49784 * 297.49708 * 14 13 12 36 36 H 1.09000 * 109.46200 * 180.80258 * 15 14 13 37 37 H 1.09001 * 109.45328 * 60.82605 * 15 14 13 38 38 H 1.07991 * 120.46359 * 359.95389 * 18 17 16 39 39 H 1.08000 * 119.57598 * 179.97438 * 19 18 17 40 40 H 1.08005 * 119.58208 * 180.28921 * 21 20 19 41 41 H 1.08005 * 120.47277 * 179.74829 * 22 21 20 42 42 H 1.09000 * 109.46943 * 58.27918 * 23 16 15 43 43 H 1.09007 * 109.46395 * 178.24424 * 23 16 15 44 44 H 1.09000 * 109.50263 * 299.24165 * 24 23 16 45 45 H 1.08996 * 109.50918 * 179.12319 * 24 23 16 46 46 H 1.08990 * 109.48605 * 56.34072 * 25 10 9 47 47 H 1.09005 * 109.48114 * 176.38660 * 25 10 9 48 48 H 1.09000 * 109.62444 * 248.38640 * 26 7 2 49 49 H 1.08997 * 109.62167 * 8.76116 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7038 1.3494 0.1302 5 1 1.9906 2.3385 -1.2724 6 1 1.7953 2.4513 1.1421 7 6 2.0045 -1.1940 -0.0005 8 6 1.2877 -2.5037 0.2423 9 6 2.0266 -3.2660 1.3473 10 6 3.4997 -3.4155 0.9637 11 1 3.5736 -3.9113 -0.0041 12 7 4.1893 -4.2221 1.9795 13 6 5.3720 -4.8837 1.4124 14 6 6.3793 -5.1754 2.5282 15 6 7.5817 -5.9187 1.9417 16 7 7.1304 -7.1727 1.3252 17 6 8.2126 -7.9361 0.8977 18 6 8.0175 -9.1714 0.2802 19 6 9.1165 -9.8966 -0.1292 20 7 10.3394 -9.4380 0.0617 21 6 10.5653 -8.2717 0.6369 22 6 9.5207 -7.4855 1.0751 23 6 6.1985 -6.9156 0.2198 24 6 4.9547 -6.2021 0.7548 25 6 4.1547 -2.0358 0.8795 26 6 3.4971 -1.2279 -0.2444 27 1 -0.4850 0.8400 0.0004 28 1 1.2865 -3.0957 -0.6729 29 1 0.2623 -2.3072 0.5558 30 1 1.5805 -4.2531 1.4688 31 1 1.9490 -2.7142 2.2841 32 1 3.5621 -4.8953 2.3935 33 1 5.8313 -4.2336 0.6678 34 1 5.9073 -5.7928 3.2924 35 1 6.7125 -4.2372 2.9719 36 1 8.2943 -6.1405 2.7362 37 1 8.0612 -5.2951 1.1872 38 1 7.0198 -9.5546 0.1253 39 1 8.9750 -10.8544 -0.6079 40 1 11.5814 -7.9308 0.7702 41 1 9.7125 -6.5340 1.5487 42 1 6.6847 -6.2875 -0.5266 43 1 5.9063 -7.8615 -0.2365 44 1 4.4603 -6.8356 1.4912 45 1 4.2702 -5.9975 -0.0683 46 1 4.0257 -1.5136 1.8274 47 1 5.2181 -2.1504 0.6691 48 1 3.7004 -1.7017 -1.2048 49 1 3.8907 -0.2115 -0.2471 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001256849580.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:59 Heat of formation + Delta-G solvation = 13.342504 kcal Electronic energy + Delta-G solvation = -26403.798425 eV Core-core repulsion = 22942.894604 eV Total energy + Delta-G solvation = -3460.903822 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.201 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -41.73145 -40.06523 -38.81662 -36.44771 -34.32367 -32.73851 -32.58165 -31.58271 -31.43848 -30.37880 -28.11344 -25.43111 -24.95927 -23.55210 -23.26919 -23.13680 -22.45782 -20.98830 -20.67016 -18.80446 -18.04211 -17.28467 -16.74533 -16.56542 -16.40621 -16.20515 -15.81275 -15.43439 -15.22458 -15.07896 -14.68558 -14.62496 -14.50649 -14.38348 -14.28346 -14.15154 -13.85434 -13.28077 -13.10764 -12.74397 -12.70738 -12.66962 -12.47484 -12.26281 -12.12664 -11.94700 -11.82904 -11.59986 -11.41996 -11.22701 -11.20168 -10.72336 -10.54775 -10.43825 -10.37790 -10.10246 -9.22453 -9.19553 -8.17336 -6.08757 0.23836 0.31465 1.37322 1.42389 1.50464 2.42003 2.53750 2.93492 3.05007 3.25712 3.63885 3.71549 3.75025 3.87582 4.05450 4.11618 4.14629 4.17362 4.26360 4.29281 4.35390 4.43138 4.50933 4.57361 4.62148 4.67175 4.74208 4.79525 4.80932 4.87663 4.93356 4.99059 5.04567 5.07224 5.07320 5.14300 5.22203 5.26529 5.28866 5.35689 5.41228 5.62985 5.65518 5.65685 5.79388 5.88103 5.90369 6.11977 6.28443 6.37949 6.61659 6.96943 7.10997 7.48379 8.93943 Molecular weight = 315.20amu Principal moments of inertia in cm(-1) A = 0.029239 B = 0.002487 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.410772 B =11255.691118 C =11565.204762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.018 3.982 3 Si 0.932 3.068 4 H -0.236 1.236 5 H -0.284 1.284 6 H -0.289 1.289 7 C -0.495 4.495 8 C 0.009 3.991 9 C -0.098 4.098 10 C 0.115 3.885 11 H 0.029 0.971 12 N -0.682 5.682 13 C 0.087 3.913 14 C -0.096 4.096 15 C 0.054 3.946 16 N -0.488 5.488 17 C 0.146 3.854 18 C -0.203 4.203 19 C 0.111 3.889 20 N -0.536 5.536 21 C 0.113 3.887 22 C -0.231 4.231 23 C 0.070 3.930 24 C -0.141 4.141 25 C -0.084 4.084 26 C -0.029 4.029 27 H 0.261 0.739 28 H -0.005 1.005 29 H 0.020 0.980 30 H 0.049 0.951 31 H 0.043 0.957 32 H 0.342 0.658 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.051 0.949 38 H 0.147 0.853 39 H 0.176 0.824 40 H 0.174 0.826 41 H 0.152 0.848 42 H 0.042 0.958 43 H 0.092 0.908 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.043 0.957 47 H 0.048 0.952 48 H 0.015 0.985 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.445 -16.664 3.025 25.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.180 4.180 3 Si 0.758 3.242 4 H -0.160 1.160 5 H -0.211 1.211 6 H -0.215 1.215 7 C -0.515 4.515 8 C -0.029 4.029 9 C -0.137 4.137 10 C 0.006 3.994 11 H 0.047 0.953 12 N -0.312 5.312 13 C -0.023 4.023 14 C -0.134 4.134 15 C -0.073 4.073 16 N -0.203 5.203 17 C 0.039 3.961 18 C -0.226 4.226 19 C -0.045 4.045 20 N -0.248 5.248 21 C -0.043 4.043 22 C -0.254 4.254 23 C -0.056 4.056 24 C -0.180 4.180 25 C -0.123 4.123 26 C -0.066 4.066 27 H 0.070 0.930 28 H 0.013 0.987 29 H 0.039 0.961 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.161 0.839 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.115 0.885 37 H 0.070 0.930 38 H 0.165 0.835 39 H 0.193 0.807 40 H 0.191 0.809 41 H 0.170 0.830 42 H 0.061 0.939 43 H 0.111 0.889 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.062 0.938 47 H 0.066 0.934 48 H 0.033 0.967 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 19.008 -16.719 3.391 25.541 hybrid contribution -1.214 1.291 -0.816 1.951 sum 17.793 -15.429 2.574 23.691 Atomic orbital electron populations 1.70033 1.07825 1.27353 1.52019 1.25650 0.95284 1.01992 0.95079 0.85893 0.81043 0.79875 0.77354 1.15966 1.21063 1.21538 1.20652 0.92695 0.92198 1.45909 1.19306 0.96199 0.94034 0.93347 1.21619 0.94799 0.98187 0.99057 1.21122 0.92592 0.93583 0.92122 0.95332 1.60608 1.10084 1.27657 1.32899 1.21674 0.91903 0.92847 0.95905 1.21500 0.94225 1.00190 0.97511 1.22355 0.97801 0.87955 0.99195 1.58746 1.13797 1.18864 1.28867 1.19500 0.90496 0.93912 0.92204 1.21991 1.01790 0.94906 1.03885 1.22985 0.86951 0.99748 0.94794 1.67753 1.25192 1.15410 1.16405 1.22980 1.00311 0.89140 0.91906 1.22494 0.92499 1.03367 1.07053 1.22139 0.92123 1.01095 0.90257 1.22298 0.97144 0.97288 1.01265 1.21420 0.97033 0.95187 0.98657 1.19991 0.94365 0.97262 0.95028 0.92963 0.98689 0.96120 0.93252 0.93846 0.83860 0.91746 0.91095 0.90286 0.88532 0.93042 0.83509 0.80704 0.80859 0.83003 0.93948 0.88921 0.90441 0.91622 0.93811 0.93375 0.96680 0.94166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.34 12.82 21.45 0.27 -55.06 16 2 C 0.02 0.98 5.44 84.65 0.46 1.44 16 3 Si 0.93 42.81 27.95 68.60 1.92 44.72 16 4 H -0.24 -9.95 5.57 99.48 0.55 -9.40 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 7 C -0.50 -26.02 5.48 -16.17 -0.09 -26.11 16 8 C 0.01 0.46 5.93 30.11 0.18 0.64 16 9 C -0.10 -3.96 5.24 30.66 0.16 -3.80 16 10 C 0.11 4.02 2.21 44.89 0.10 4.12 16 11 H 0.03 1.03 7.16 -2.39 -0.02 1.01 16 12 N -0.68 -18.84 6.06 -469.17 -2.84 -21.68 16 13 C 0.09 1.95 2.33 45.00 0.10 2.05 16 14 C -0.10 -1.78 5.70 30.65 0.17 -1.61 16 15 C 0.05 0.85 4.16 86.33 0.36 1.21 16 16 N -0.49 -8.44 4.70 -694.75 -3.26 -11.71 16 17 C 0.15 2.56 5.65 38.58 0.22 2.78 16 18 C -0.20 -3.29 9.25 22.49 0.21 -3.08 16 19 C 0.11 1.82 11.17 84.59 0.94 2.77 16 20 N -0.54 -10.49 10.36 -196.16 -2.03 -12.52 16 21 C 0.11 1.85 11.17 84.59 0.94 2.80 16 22 C -0.23 -3.67 8.88 22.49 0.20 -3.47 16 23 C 0.07 1.21 5.26 86.33 0.45 1.66 16 24 C -0.14 -2.77 5.34 30.65 0.16 -2.60 16 25 C -0.08 -3.25 5.43 30.66 0.17 -3.09 16 26 C -0.03 -1.28 5.66 30.11 0.17 -1.11 16 27 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 28 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 29 H 0.02 1.14 7.19 -2.38 -0.02 1.12 16 30 H 0.05 1.74 8.05 -2.39 -0.02 1.72 16 31 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.34 8.79 8.01 -89.70 -0.72 8.07 16 33 H 0.06 1.62 7.09 -2.39 -0.02 1.60 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.10 1.31 7.02 -2.39 -0.02 1.29 16 37 H 0.05 0.81 7.77 -2.39 -0.02 0.79 16 38 H 0.15 1.92 7.24 -2.92 -0.02 1.90 16 39 H 0.18 1.91 8.06 -2.91 -0.02 1.88 16 40 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 41 H 0.15 1.86 5.96 -2.91 -0.02 1.84 16 42 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.09 1.41 6.78 -2.38 -0.02 1.39 16 44 H 0.08 1.49 8.10 -2.39 -0.02 1.48 16 45 H 0.07 1.43 7.49 -2.39 -0.02 1.41 16 46 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.05 1.64 7.38 -2.38 -0.02 1.62 16 48 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 49 H 0.04 1.79 4.35 -2.39 -0.01 1.78 16 Total: -1.00 -62.65 366.98 -0.96 -63.60 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: 0.07 Total: 18.05 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: 4.92 Total: -25.40 kcal Atomic # 7 Polarization: -93.11 SS G_CDS: -7.87 Total: -100.98 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 1.92 Total: 44.72 kcal Total: -62.65 -0.96 -63.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001256849580.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.947 kcal (2) G-P(sol) polarization free energy of solvation -62.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds