Wall clock time and date at job start Tue Mar 31 2020 12:37:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31511 * 1
3 3 Si 1.86804 * 119.99870 * 2 1
4 4 H 1.48500 * 109.46699 * 174.66444 * 3 2 1
5 5 H 1.48500 * 109.46997 * 294.66170 * 3 2 1
6 6 H 1.48498 * 109.47108 * 54.66541 * 3 2 1
7 7 C 1.37875 * 120.00066 * 180.02562 * 2 1 3
8 8 C 1.51268 * 120.85161 * 349.19463 * 7 2 1
9 9 C 1.53229 * 108.54033 * 231.33114 * 8 7 2
10 10 C 1.52965 * 109.40057 * 305.37040 * 9 8 7
11 11 H 1.08993 * 109.41437 * 303.56037 * 10 9 8
12 12 N 1.46902 * 109.40803 * 183.70236 * 10 9 8
13 13 C 1.46905 * 110.99468 * 154.86237 * 12 10 9
14 14 C 1.53122 * 109.52167 * 155.00133 * 13 12 10
15 15 C 1.53036 * 109.27691 * 177.55559 * 14 13 12
16 16 N 1.46847 * 109.52605 * 300.81806 * 15 14 13
17 17 C 1.39161 * 111.00293 * 185.83800 * 16 15 14
18 18 C 1.39479 * 120.86701 * 180.02562 * 17 16 15
19 19 C 1.37894 * 119.06469 * 179.97438 * 18 17 16
20 20 N 1.31995 * 120.84584 * 0.27512 * 19 18 17
21 21 C 1.31990 * 121.90875 * 359.42825 * 20 19 18
22 22 C 1.37890 * 120.84401 * 0.57432 * 21 20 19
23 23 C 1.46847 * 111.19357 * 61.74251 * 16 15 14
24 24 C 1.53041 * 109.52730 * 298.25601 * 23 16 15
25 25 C 1.52959 * 109.75787 * 63.63752 * 10 9 8
26 26 C 1.51276 * 120.85064 * 169.17686 * 7 2 1
27 27 H 0.97000 * 120.00098 * 359.97438 * 1 2 3
28 28 H 1.09002 * 109.62614 * 111.61303 * 8 7 2
29 29 H 1.09008 * 109.62160 * 351.04509 * 8 7 2
30 30 H 1.09000 * 109.48451 * 185.39106 * 9 8 7
31 31 H 1.09001 * 109.49126 * 65.35323 * 9 8 7
32 32 H 1.00895 * 111.00052 * 30.90920 * 12 10 9
33 33 H 1.08997 * 109.52858 * 34.86987 * 13 12 10
34 34 H 1.08998 * 109.50408 * 57.61768 * 14 13 12
35 35 H 1.09001 * 109.49784 * 297.49708 * 14 13 12
36 36 H 1.09000 * 109.46200 * 180.80258 * 15 14 13
37 37 H 1.09001 * 109.45328 * 60.82605 * 15 14 13
38 38 H 1.07991 * 120.46359 * 359.95389 * 18 17 16
39 39 H 1.08000 * 119.57598 * 179.97438 * 19 18 17
40 40 H 1.08005 * 119.58208 * 180.28921 * 21 20 19
41 41 H 1.08005 * 120.47277 * 179.74829 * 22 21 20
42 42 H 1.09000 * 109.46943 * 58.27918 * 23 16 15
43 43 H 1.09007 * 109.46395 * 178.24424 * 23 16 15
44 44 H 1.09000 * 109.50263 * 299.24165 * 24 23 16
45 45 H 1.08996 * 109.50918 * 179.12319 * 24 23 16
46 46 H 1.08990 * 109.48605 * 56.34072 * 25 10 9
47 47 H 1.09005 * 109.48114 * 176.38660 * 25 10 9
48 48 H 1.09000 * 109.62444 * 248.38640 * 26 7 2
49 49 H 1.08997 * 109.62167 * 8.76116 * 26 7 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.7038 1.3494 0.1302
5 1 1.9906 2.3385 -1.2724
6 1 1.7953 2.4513 1.1421
7 6 2.0045 -1.1940 -0.0005
8 6 1.2877 -2.5037 0.2423
9 6 2.0266 -3.2660 1.3473
10 6 3.4997 -3.4155 0.9637
11 1 3.5736 -3.9113 -0.0041
12 7 4.1893 -4.2221 1.9795
13 6 5.3720 -4.8837 1.4124
14 6 6.3793 -5.1754 2.5282
15 6 7.5817 -5.9187 1.9417
16 7 7.1304 -7.1727 1.3252
17 6 8.2126 -7.9361 0.8977
18 6 8.0175 -9.1714 0.2802
19 6 9.1165 -9.8966 -0.1292
20 7 10.3394 -9.4380 0.0617
21 6 10.5653 -8.2717 0.6369
22 6 9.5207 -7.4855 1.0751
23 6 6.1985 -6.9156 0.2198
24 6 4.9547 -6.2021 0.7548
25 6 4.1547 -2.0358 0.8795
26 6 3.4971 -1.2279 -0.2444
27 1 -0.4850 0.8400 0.0004
28 1 1.2865 -3.0957 -0.6729
29 1 0.2623 -2.3072 0.5558
30 1 1.5805 -4.2531 1.4688
31 1 1.9490 -2.7142 2.2841
32 1 3.5621 -4.8953 2.3935
33 1 5.8313 -4.2336 0.6678
34 1 5.9073 -5.7928 3.2924
35 1 6.7125 -4.2372 2.9719
36 1 8.2943 -6.1405 2.7362
37 1 8.0612 -5.2951 1.1872
38 1 7.0198 -9.5546 0.1253
39 1 8.9750 -10.8544 -0.6079
40 1 11.5814 -7.9308 0.7702
41 1 9.7125 -6.5340 1.5487
42 1 6.6847 -6.2875 -0.5266
43 1 5.9063 -7.8615 -0.2365
44 1 4.4603 -6.8356 1.4912
45 1 4.2702 -5.9975 -0.0683
46 1 4.0257 -1.5136 1.8274
47 1 5.2181 -2.1504 0.6691
48 1 3.7004 -1.7017 -1.2048
49 1 3.8907 -0.2115 -0.2471
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001256849580.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:37:59
Heat of formation + Delta-G solvation = 13.342504 kcal
Electronic energy + Delta-G solvation = -26403.798425 eV
Core-core repulsion = 22942.894604 eV
Total energy + Delta-G solvation = -3460.903822 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.201 amu
Computer time = 0.06 seconds
Orbital eigenvalues (eV)
-41.73145 -40.06523 -38.81662 -36.44771 -34.32367 -32.73851 -32.58165 -31.58271
-31.43848 -30.37880 -28.11344 -25.43111 -24.95927 -23.55210 -23.26919 -23.13680
-22.45782 -20.98830 -20.67016 -18.80446 -18.04211 -17.28467 -16.74533 -16.56542
-16.40621 -16.20515 -15.81275 -15.43439 -15.22458 -15.07896 -14.68558 -14.62496
-14.50649 -14.38348 -14.28346 -14.15154 -13.85434 -13.28077 -13.10764 -12.74397
-12.70738 -12.66962 -12.47484 -12.26281 -12.12664 -11.94700 -11.82904 -11.59986
-11.41996 -11.22701 -11.20168 -10.72336 -10.54775 -10.43825 -10.37790 -10.10246
-9.22453 -9.19553 -8.17336 -6.08757 0.23836 0.31465 1.37322 1.42389
1.50464 2.42003 2.53750 2.93492 3.05007 3.25712 3.63885 3.71549
3.75025 3.87582 4.05450 4.11618 4.14629 4.17362 4.26360 4.29281
4.35390 4.43138 4.50933 4.57361 4.62148 4.67175 4.74208 4.79525
4.80932 4.87663 4.93356 4.99059 5.04567 5.07224 5.07320 5.14300
5.22203 5.26529 5.28866 5.35689 5.41228 5.62985 5.65518 5.65685
5.79388 5.88103 5.90369 6.11977 6.28443 6.37949 6.61659 6.96943
7.10997 7.48379 8.93943
Molecular weight = 315.20amu
Principal moments of inertia in cm(-1)
A = 0.029239 B = 0.002487 C = 0.002420
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 957.410772 B =11255.691118 C =11565.204762
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.932 5.932
2 C 0.018 3.982
3 Si 0.932 3.068
4 H -0.236 1.236
5 H -0.284 1.284
6 H -0.289 1.289
7 C -0.495 4.495
8 C 0.009 3.991
9 C -0.098 4.098
10 C 0.115 3.885
11 H 0.029 0.971
12 N -0.682 5.682
13 C 0.087 3.913
14 C -0.096 4.096
15 C 0.054 3.946
16 N -0.488 5.488
17 C 0.146 3.854
18 C -0.203 4.203
19 C 0.111 3.889
20 N -0.536 5.536
21 C 0.113 3.887
22 C -0.231 4.231
23 C 0.070 3.930
24 C -0.141 4.141
25 C -0.084 4.084
26 C -0.029 4.029
27 H 0.261 0.739
28 H -0.005 1.005
29 H 0.020 0.980
30 H 0.049 0.951
31 H 0.043 0.957
32 H 0.342 0.658
33 H 0.064 0.936
34 H 0.070 0.930
35 H 0.079 0.921
36 H 0.096 0.904
37 H 0.051 0.949
38 H 0.147 0.853
39 H 0.176 0.824
40 H 0.174 0.826
41 H 0.152 0.848
42 H 0.042 0.958
43 H 0.092 0.908
44 H 0.077 0.923
45 H 0.065 0.935
46 H 0.043 0.957
47 H 0.048 0.952
48 H 0.015 0.985
49 H 0.040 0.960
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.445 -16.664 3.025 25.041
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.572 5.572
2 C -0.180 4.180
3 Si 0.758 3.242
4 H -0.160 1.160
5 H -0.211 1.211
6 H -0.215 1.215
7 C -0.515 4.515
8 C -0.029 4.029
9 C -0.137 4.137
10 C 0.006 3.994
11 H 0.047 0.953
12 N -0.312 5.312
13 C -0.023 4.023
14 C -0.134 4.134
15 C -0.073 4.073
16 N -0.203 5.203
17 C 0.039 3.961
18 C -0.226 4.226
19 C -0.045 4.045
20 N -0.248 5.248
21 C -0.043 4.043
22 C -0.254 4.254
23 C -0.056 4.056
24 C -0.180 4.180
25 C -0.123 4.123
26 C -0.066 4.066
27 H 0.070 0.930
28 H 0.013 0.987
29 H 0.039 0.961
30 H 0.067 0.933
31 H 0.062 0.938
32 H 0.161 0.839
33 H 0.083 0.917
34 H 0.089 0.911
35 H 0.097 0.903
36 H 0.115 0.885
37 H 0.070 0.930
38 H 0.165 0.835
39 H 0.193 0.807
40 H 0.191 0.809
41 H 0.170 0.830
42 H 0.061 0.939
43 H 0.111 0.889
44 H 0.096 0.904
45 H 0.084 0.916
46 H 0.062 0.938
47 H 0.066 0.934
48 H 0.033 0.967
49 H 0.058 0.942
Dipole moment (debyes) X Y Z Total
from point charges 19.008 -16.719 3.391 25.541
hybrid contribution -1.214 1.291 -0.816 1.951
sum 17.793 -15.429 2.574 23.691
Atomic orbital electron populations
1.70033 1.07825 1.27353 1.52019 1.25650 0.95284 1.01992 0.95079
0.85893 0.81043 0.79875 0.77354 1.15966 1.21063 1.21538 1.20652
0.92695 0.92198 1.45909 1.19306 0.96199 0.94034 0.93347 1.21619
0.94799 0.98187 0.99057 1.21122 0.92592 0.93583 0.92122 0.95332
1.60608 1.10084 1.27657 1.32899 1.21674 0.91903 0.92847 0.95905
1.21500 0.94225 1.00190 0.97511 1.22355 0.97801 0.87955 0.99195
1.58746 1.13797 1.18864 1.28867 1.19500 0.90496 0.93912 0.92204
1.21991 1.01790 0.94906 1.03885 1.22985 0.86951 0.99748 0.94794
1.67753 1.25192 1.15410 1.16405 1.22980 1.00311 0.89140 0.91906
1.22494 0.92499 1.03367 1.07053 1.22139 0.92123 1.01095 0.90257
1.22298 0.97144 0.97288 1.01265 1.21420 0.97033 0.95187 0.98657
1.19991 0.94365 0.97262 0.95028 0.92963 0.98689 0.96120 0.93252
0.93846 0.83860 0.91746 0.91095 0.90286 0.88532 0.93042 0.83509
0.80704 0.80859 0.83003 0.93948 0.88921 0.90441 0.91622 0.93811
0.93375 0.96680 0.94166
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -55.34 12.82 21.45 0.27 -55.06 16
2 C 0.02 0.98 5.44 84.65 0.46 1.44 16
3 Si 0.93 42.81 27.95 68.60 1.92 44.72 16
4 H -0.24 -9.95 5.57 99.48 0.55 -9.40 16
5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16
6 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16
7 C -0.50 -26.02 5.48 -16.17 -0.09 -26.11 16
8 C 0.01 0.46 5.93 30.11 0.18 0.64 16
9 C -0.10 -3.96 5.24 30.66 0.16 -3.80 16
10 C 0.11 4.02 2.21 44.89 0.10 4.12 16
11 H 0.03 1.03 7.16 -2.39 -0.02 1.01 16
12 N -0.68 -18.84 6.06 -469.17 -2.84 -21.68 16
13 C 0.09 1.95 2.33 45.00 0.10 2.05 16
14 C -0.10 -1.78 5.70 30.65 0.17 -1.61 16
15 C 0.05 0.85 4.16 86.33 0.36 1.21 16
16 N -0.49 -8.44 4.70 -694.75 -3.26 -11.71 16
17 C 0.15 2.56 5.65 38.58 0.22 2.78 16
18 C -0.20 -3.29 9.25 22.49 0.21 -3.08 16
19 C 0.11 1.82 11.17 84.59 0.94 2.77 16
20 N -0.54 -10.49 10.36 -196.16 -2.03 -12.52 16
21 C 0.11 1.85 11.17 84.59 0.94 2.80 16
22 C -0.23 -3.67 8.88 22.49 0.20 -3.47 16
23 C 0.07 1.21 5.26 86.33 0.45 1.66 16
24 C -0.14 -2.77 5.34 30.65 0.16 -2.60 16
25 C -0.08 -3.25 5.43 30.66 0.17 -3.09 16
26 C -0.03 -1.28 5.66 30.11 0.17 -1.11 16
27 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16
28 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16
29 H 0.02 1.14 7.19 -2.38 -0.02 1.12 16
30 H 0.05 1.74 8.05 -2.39 -0.02 1.72 16
31 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16
32 H 0.34 8.79 8.01 -89.70 -0.72 8.07 16
33 H 0.06 1.62 7.09 -2.39 -0.02 1.60 16
34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16
35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16
36 H 0.10 1.31 7.02 -2.39 -0.02 1.29 16
37 H 0.05 0.81 7.77 -2.39 -0.02 0.79 16
38 H 0.15 1.92 7.24 -2.92 -0.02 1.90 16
39 H 0.18 1.91 8.06 -2.91 -0.02 1.88 16
40 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16
41 H 0.15 1.86 5.96 -2.91 -0.02 1.84 16
42 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16
43 H 0.09 1.41 6.78 -2.38 -0.02 1.39 16
44 H 0.08 1.49 8.10 -2.39 -0.02 1.48 16
45 H 0.07 1.43 7.49 -2.39 -0.02 1.41 16
46 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16
47 H 0.05 1.64 7.38 -2.38 -0.02 1.62 16
48 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16
49 H 0.04 1.79 4.35 -2.39 -0.01 1.78 16
Total: -1.00 -62.65 366.98 -0.96 -63.60
By element:
Atomic # 1 Polarization: 17.98 SS G_CDS: 0.07 Total: 18.05 kcal
Atomic # 6 Polarization: -30.32 SS G_CDS: 4.92 Total: -25.40 kcal
Atomic # 7 Polarization: -93.11 SS G_CDS: -7.87 Total: -100.98 kcal
Atomic # 14 Polarization: 42.81 SS G_CDS: 1.92 Total: 44.72 kcal
Total: -62.65 -0.96 -63.60 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001256849580.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.947 kcal
(2) G-P(sol) polarization free energy of solvation -62.648 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.299 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.957 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.605 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.343 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.06 seconds