Wall clock time and date at job start Tue Mar 31 2020 10:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46804 * 2 1 4 4 C 1.52999 * 109.46907 * 119.99464 * 2 1 3 5 5 C 1.53004 * 109.46907 * 180.02562 * 4 2 1 6 6 H 1.08998 * 109.46876 * 179.97438 * 5 4 2 7 7 N 1.46493 * 109.46840 * 60.00435 * 5 4 2 8 8 C 1.34777 * 120.00084 * 84.99802 * 7 5 4 9 9 O 1.21281 * 120.00403 * 0.02562 * 8 7 5 10 10 C 1.50709 * 120.00188 * 179.97438 * 8 7 5 11 11 H 1.08997 * 109.46964 * 300.00419 * 10 8 7 12 12 C 1.50699 * 109.46952 * 60.00023 * 10 8 7 13 13 H 1.08004 * 120.00167 * 34.11623 * 12 10 8 14 14 C 1.37872 * 120.00017 * 214.11972 * 12 10 8 15 15 N 1.31512 * 120.00380 * 6.39623 * 14 12 10 16 16 Si 1.86800 * 119.99903 * 186.39164 * 14 12 10 17 17 H 1.48499 * 109.47516 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47080 * 119.99965 * 16 14 12 19 19 H 1.48498 * 109.47573 * 240.00086 * 16 14 12 20 20 C 1.50698 * 109.47042 * 179.97438 * 10 8 7 21 21 C 1.38234 * 120.00107 * 293.85748 * 20 10 8 22 22 C 1.38232 * 119.99806 * 179.74572 * 21 20 10 23 23 C 1.38238 * 120.00158 * 0.53242 * 22 21 20 24 24 C 1.38240 * 119.99934 * 359.74257 * 23 22 21 25 25 C 1.38240 * 119.99475 * 114.13297 * 20 10 8 26 26 C 1.53000 * 109.47139 * 300.00222 * 5 4 2 27 27 C 1.52994 * 109.47125 * 60.00272 * 26 5 4 28 28 H 1.09000 * 109.47245 * 59.99424 * 27 26 5 29 29 C 1.53002 * 109.47410 * 179.97438 * 27 26 5 30 30 C 1.53002 * 109.47199 * 240.00072 * 2 1 3 31 31 H 1.09000 * 109.46804 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47336 * 300.00174 * 1 2 3 33 33 H 1.09006 * 109.46614 * 60.00431 * 1 2 3 34 34 H 1.09000 * 109.46951 * 60.00626 * 4 2 1 35 35 H 1.08994 * 109.47418 * 300.00312 * 4 2 1 36 36 H 0.97005 * 120.00145 * 264.99870 * 7 5 4 37 37 H 0.96994 * 120.00630 * 179.97438 * 15 14 12 38 38 H 1.07994 * 119.99849 * 359.97438 * 21 20 10 39 39 H 1.08004 * 120.00253 * 180.29411 * 22 21 20 40 40 H 1.07992 * 120.00480 * 179.76738 * 23 22 21 41 41 H 1.07997 * 120.00267 * 180.02562 * 24 23 22 42 42 H 1.07992 * 120.00233 * 0.02562 * 25 20 10 43 43 H 1.08994 * 109.47161 * 299.99641 * 26 5 4 44 44 H 1.08999 * 109.46788 * 179.97438 * 26 5 4 45 45 H 1.08994 * 109.47404 * 180.02562 * 29 27 26 46 46 H 1.08999 * 109.46848 * 299.99850 * 29 27 26 47 47 H 1.09000 * 109.47184 * 59.99635 * 29 27 26 48 48 H 1.08994 * 109.47404 * 60.00112 * 30 2 1 49 49 H 1.09003 * 109.46567 * 299.99273 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5700 -0.7206 1.2496 6 1 3.9333 -1.2339 2.1399 7 7 4.0578 0.6608 1.2499 8 6 4.1859 1.3300 2.4128 9 8 3.8979 0.7884 3.4591 10 6 4.6882 2.7509 2.4132 11 1 5.6876 2.7830 1.9793 12 6 3.7587 3.6124 1.5979 13 1 2.6991 3.4036 1.5870 14 6 4.2609 4.6673 0.8657 15 7 5.5608 4.8463 0.7769 16 14 3.0951 5.8421 -0.0002 17 1 1.6927 5.4254 0.2545 18 1 3.3038 7.2181 0.5178 19 1 3.3617 5.8173 -1.4608 20 6 4.7376 3.2658 3.8286 21 6 3.5665 3.4398 4.5421 22 6 3.6123 3.9072 5.8422 23 6 4.8284 4.2110 6.4251 24 6 5.9991 4.0424 5.7096 25 6 5.9538 3.5695 4.4114 26 6 4.0805 -1.4415 0.0004 27 6 3.5706 -0.7203 -1.2488 28 1 3.9335 0.3075 -1.2486 29 6 4.0817 -1.4409 -2.4981 30 6 2.0401 -0.7212 -1.2493 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.6767 -1.7488 1.2493 35 1 1.6766 -0.2073 2.1392 36 1 4.2885 1.0939 0.4132 37 1 5.9142 5.5882 0.2616 38 1 2.6162 3.2071 4.0850 39 1 2.6976 4.0386 6.4013 40 1 4.8639 4.5797 7.4395 41 1 6.9492 4.2793 6.1651 42 1 6.8684 3.4382 3.8523 43 1 3.7177 -2.4693 0.0003 44 1 5.1705 -1.4407 0.0005 45 1 3.7188 -0.9268 -3.3880 46 1 5.1716 -1.4401 -2.4976 47 1 3.7191 -2.4688 -2.4985 48 1 1.6768 -0.2075 -2.1392 49 1 1.6768 -1.7489 -1.2491 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265331116.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:04 Heat of formation + Delta-G solvation = -52.412905 kcal Electronic energy + Delta-G solvation = -27549.610719 eV Core-core repulsion = 24053.562778 eV Total energy + Delta-G solvation = -3496.047941 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.82564 -38.53114 -37.28652 -33.62036 -33.51093 -33.31210 -31.09389 -29.92281 -29.81289 -27.14451 -26.53355 -26.15218 -23.92974 -21.92885 -21.56285 -21.01607 -20.40356 -19.59728 -18.48627 -16.76396 -16.19565 -15.83070 -15.36995 -15.00802 -14.78269 -14.51861 -14.16716 -13.98277 -13.88289 -13.47411 -13.06726 -12.90035 -12.55030 -12.47018 -12.33435 -12.24809 -12.11694 -11.82599 -11.67937 -11.58091 -11.55855 -11.44360 -11.08094 -11.03220 -10.96713 -10.61550 -10.38782 -10.25961 -10.21174 -9.98497 -9.96004 -9.75489 -9.41496 -8.75999 -8.52607 -8.19974 -7.93242 -7.59303 -6.27125 -4.31390 2.38865 2.42098 3.18288 3.28035 3.31217 3.79434 4.14280 4.29737 4.78820 4.84004 4.87069 4.88893 5.10848 5.21299 5.27488 5.48222 5.52715 5.62301 5.68924 5.73222 5.76348 5.80571 5.82377 5.87613 5.90376 5.94042 6.00772 6.02379 6.05981 6.16046 6.21837 6.23928 6.32835 6.41401 6.49069 6.49445 6.57086 6.62617 6.64292 6.73279 6.89538 6.99684 7.20678 7.37650 7.38246 7.46933 7.64396 7.78177 7.97761 8.09917 8.49465 8.73481 9.31328 9.37168 10.81582 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011531 B = 0.005071 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.630930 B = 5520.686508 C = 6493.495281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.082 0.918 4 C -0.120 4.120 5 C 0.146 3.854 6 H 0.079 0.921 7 N -0.721 5.721 8 C 0.528 3.472 9 O -0.570 6.570 10 C 0.047 3.953 11 H 0.090 0.910 12 C -0.510 4.510 13 H 0.062 0.938 14 C 0.075 3.925 15 N -0.879 5.879 16 Si 0.893 3.107 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.010 4.010 21 C -0.084 4.084 22 C -0.135 4.135 23 C -0.149 4.149 24 C -0.132 4.132 25 C -0.121 4.121 26 C -0.118 4.118 27 C -0.096 4.096 28 H 0.076 0.924 29 C -0.145 4.145 30 C -0.104 4.104 31 H 0.048 0.952 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.403 0.597 37 H 0.266 0.734 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.112 0.888 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.052 0.948 46 H 0.053 0.947 47 H 0.051 0.949 48 H 0.058 0.942 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.340 -9.237 -3.240 10.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.100 0.900 4 C -0.159 4.159 5 C 0.040 3.960 6 H 0.097 0.903 7 N -0.374 5.374 8 C 0.318 3.682 9 O -0.450 6.450 10 C 0.026 3.974 11 H 0.108 0.892 12 C -0.548 4.548 13 H 0.080 0.920 14 C -0.129 4.129 15 N -0.515 5.515 16 Si 0.721 3.279 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.011 4.011 21 C -0.102 4.102 22 C -0.153 4.153 23 C -0.168 4.168 24 C -0.150 4.150 25 C -0.139 4.139 26 C -0.156 4.156 27 C -0.115 4.115 28 H 0.094 0.906 29 C -0.202 4.202 30 C -0.142 4.142 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.239 0.761 37 H 0.076 0.924 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.130 0.870 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.077 0.923 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.395 -9.508 -2.588 10.422 hybrid contribution -0.486 1.079 -0.873 1.470 sum -3.881 -8.429 -3.461 9.904 Atomic orbital electron populations 1.21793 0.95831 1.00989 1.01493 1.21130 0.94914 1.00942 0.94377 0.89967 1.21927 0.95745 0.99967 0.98238 1.20761 0.93375 0.83989 0.97857 0.90285 1.46029 1.68156 1.13017 1.10220 1.21564 0.75417 0.88904 0.82331 1.90569 1.51865 1.70505 1.32014 1.18145 1.00973 0.87486 0.90803 0.89184 1.20694 0.93382 1.13258 1.27459 0.91965 1.24937 0.95117 0.97363 0.95521 1.69884 1.11182 1.30279 1.40192 0.86503 0.81329 0.81085 0.79024 1.19462 1.20753 1.20827 1.20069 0.91940 0.93992 0.95107 1.20817 0.98394 0.97694 0.93300 1.20958 0.96936 1.01538 0.95858 1.20793 0.93055 1.03755 0.99149 1.20900 0.97288 1.01661 0.95166 1.21003 0.97722 1.00642 0.94534 1.21848 1.00738 0.99133 0.93911 1.21160 0.95696 1.00269 0.94365 0.90608 1.21809 1.00888 1.00069 0.97438 1.21632 0.94692 1.00167 0.97686 0.93298 0.92802 0.93070 0.92205 0.91467 0.76070 0.92435 0.87142 0.87640 0.87749 0.87595 0.87041 0.91201 0.91550 0.92840 0.92753 0.93032 0.92310 0.92443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.19 37.16 0.34 -1.44 16 2 C -0.10 -1.30 2.56 -90.62 -0.23 -1.53 16 3 H 0.08 1.34 7.60 -51.93 -0.39 0.95 16 4 C -0.12 -1.75 4.88 -26.73 -0.13 -1.88 16 5 C 0.15 2.22 2.78 -67.93 -0.19 2.03 16 6 H 0.08 1.33 7.58 -51.93 -0.39 0.93 16 7 N -0.72 -13.06 4.13 -53.81 -0.22 -13.28 16 8 C 0.53 11.59 7.01 -10.98 -0.08 11.51 16 9 O -0.57 -13.74 15.08 5.56 0.08 -13.65 16 10 C 0.05 1.11 2.45 -94.07 -0.23 0.88 16 11 H 0.09 2.27 7.00 -51.93 -0.36 1.91 16 12 C -0.51 -12.59 7.46 -34.44 -0.26 -12.85 16 13 H 0.06 1.56 7.82 -52.48 -0.41 1.15 16 14 C 0.08 1.89 5.45 -17.82 -0.10 1.79 16 15 N -0.88 -23.00 12.78 55.43 0.71 -22.29 16 16 Si 0.89 19.95 29.54 -169.99 -5.02 14.93 16 17 H -0.27 -6.01 7.11 56.52 0.40 -5.60 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 20 C -0.01 -0.24 4.30 -104.62 -0.45 -0.69 16 21 C -0.08 -1.90 8.31 -39.58 -0.33 -2.23 16 22 C -0.13 -2.69 10.05 -39.58 -0.40 -3.08 16 23 C -0.15 -2.81 10.05 -39.58 -0.40 -3.21 16 24 C -0.13 -2.58 10.05 -39.58 -0.40 -2.97 16 25 C -0.12 -2.66 9.67 -39.58 -0.38 -3.04 16 26 C -0.12 -1.44 4.89 -26.73 -0.13 -1.57 16 27 C -0.10 -1.13 2.55 -90.59 -0.23 -1.36 16 28 H 0.08 1.01 6.51 -51.93 -0.34 0.68 16 29 C -0.14 -1.45 9.19 37.16 0.34 -1.11 16 30 C -0.10 -1.22 4.49 -26.70 -0.12 -1.34 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.40 7.18 6.75 -40.82 -0.28 6.91 16 37 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 38 H 0.11 2.53 7.89 -52.49 -0.41 2.12 16 39 H 0.11 1.80 8.06 -52.48 -0.42 1.38 16 40 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.11 1.75 8.06 -52.49 -0.42 1.32 16 42 H 0.11 2.37 7.95 -52.49 -0.42 1.95 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 49 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 387.47 15.07 5.84 5.84 Total: -1.00 -27.63 387.47 -10.46 -38.09 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -8.48 Total: 12.44 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -3.37 Total: -22.07 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.49 Total: -35.57 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.08 Total: -13.65 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -27.63 -10.46 -38.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265331116.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.322 kcal (2) G-P(sol) polarization free energy of solvation -27.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds