Wall clock time and date at job start Tue Mar 31 2020 10:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46804 * 2 1 4 4 C 1.52999 * 109.46907 * 119.99464 * 2 1 3 5 5 C 1.53004 * 109.46907 * 180.02562 * 4 2 1 6 6 H 1.08998 * 109.46876 * 179.97438 * 5 4 2 7 7 N 1.46493 * 109.46840 * 60.00435 * 5 4 2 8 8 C 1.34777 * 120.00084 * 84.99802 * 7 5 4 9 9 O 1.21281 * 120.00403 * 0.02562 * 8 7 5 10 10 C 1.50709 * 120.00188 * 179.97438 * 8 7 5 11 11 H 1.08997 * 109.46964 * 300.00419 * 10 8 7 12 12 C 1.50699 * 109.46952 * 60.00023 * 10 8 7 13 13 H 1.08004 * 120.00167 * 34.11623 * 12 10 8 14 14 C 1.37872 * 120.00017 * 214.11972 * 12 10 8 15 15 N 1.31512 * 120.00380 * 6.39623 * 14 12 10 16 16 Si 1.86800 * 119.99903 * 186.39164 * 14 12 10 17 17 H 1.48499 * 109.47516 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47080 * 119.99965 * 16 14 12 19 19 H 1.48498 * 109.47573 * 240.00086 * 16 14 12 20 20 C 1.50698 * 109.47042 * 179.97438 * 10 8 7 21 21 C 1.38234 * 120.00107 * 293.85748 * 20 10 8 22 22 C 1.38232 * 119.99806 * 179.74572 * 21 20 10 23 23 C 1.38238 * 120.00158 * 0.53242 * 22 21 20 24 24 C 1.38240 * 119.99934 * 359.74257 * 23 22 21 25 25 C 1.38240 * 119.99475 * 114.13297 * 20 10 8 26 26 C 1.53000 * 109.47139 * 300.00222 * 5 4 2 27 27 C 1.52994 * 109.47125 * 60.00272 * 26 5 4 28 28 H 1.09000 * 109.47245 * 59.99424 * 27 26 5 29 29 C 1.53002 * 109.47410 * 179.97438 * 27 26 5 30 30 C 1.53002 * 109.47199 * 240.00072 * 2 1 3 31 31 H 1.09000 * 109.46804 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47336 * 300.00174 * 1 2 3 33 33 H 1.09006 * 109.46614 * 60.00431 * 1 2 3 34 34 H 1.09000 * 109.46951 * 60.00626 * 4 2 1 35 35 H 1.08994 * 109.47418 * 300.00312 * 4 2 1 36 36 H 0.97005 * 120.00145 * 264.99870 * 7 5 4 37 37 H 0.96994 * 120.00630 * 179.97438 * 15 14 12 38 38 H 1.07994 * 119.99849 * 359.97438 * 21 20 10 39 39 H 1.08004 * 120.00253 * 180.29411 * 22 21 20 40 40 H 1.07992 * 120.00480 * 179.76738 * 23 22 21 41 41 H 1.07997 * 120.00267 * 180.02562 * 24 23 22 42 42 H 1.07992 * 120.00233 * 0.02562 * 25 20 10 43 43 H 1.08994 * 109.47161 * 299.99641 * 26 5 4 44 44 H 1.08999 * 109.46788 * 179.97438 * 26 5 4 45 45 H 1.08994 * 109.47404 * 180.02562 * 29 27 26 46 46 H 1.08999 * 109.46848 * 299.99850 * 29 27 26 47 47 H 1.09000 * 109.47184 * 59.99635 * 29 27 26 48 48 H 1.08994 * 109.47404 * 60.00112 * 30 2 1 49 49 H 1.09003 * 109.46567 * 299.99273 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5700 -0.7206 1.2496 6 1 3.9333 -1.2339 2.1399 7 7 4.0578 0.6608 1.2499 8 6 4.1859 1.3300 2.4128 9 8 3.8979 0.7884 3.4591 10 6 4.6882 2.7509 2.4132 11 1 5.6876 2.7830 1.9793 12 6 3.7587 3.6124 1.5979 13 1 2.6991 3.4036 1.5870 14 6 4.2609 4.6673 0.8657 15 7 5.5608 4.8463 0.7769 16 14 3.0951 5.8421 -0.0002 17 1 1.6927 5.4254 0.2545 18 1 3.3038 7.2181 0.5178 19 1 3.3617 5.8173 -1.4608 20 6 4.7376 3.2658 3.8286 21 6 3.5665 3.4398 4.5421 22 6 3.6123 3.9072 5.8422 23 6 4.8284 4.2110 6.4251 24 6 5.9991 4.0424 5.7096 25 6 5.9538 3.5695 4.4114 26 6 4.0805 -1.4415 0.0004 27 6 3.5706 -0.7203 -1.2488 28 1 3.9335 0.3075 -1.2486 29 6 4.0817 -1.4409 -2.4981 30 6 2.0401 -0.7212 -1.2493 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.6767 -1.7488 1.2493 35 1 1.6766 -0.2073 2.1392 36 1 4.2885 1.0939 0.4132 37 1 5.9142 5.5882 0.2616 38 1 2.6162 3.2071 4.0850 39 1 2.6976 4.0386 6.4013 40 1 4.8639 4.5797 7.4395 41 1 6.9492 4.2793 6.1651 42 1 6.8684 3.4382 3.8523 43 1 3.7177 -2.4693 0.0003 44 1 5.1705 -1.4407 0.0005 45 1 3.7188 -0.9268 -3.3880 46 1 5.1716 -1.4401 -2.4976 47 1 3.7191 -2.4688 -2.4985 48 1 1.6768 -0.2075 -2.1392 49 1 1.6768 -1.7489 -1.2491 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265331116.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:03 Heat of formation + Delta-G solvation = -64.491803 kcal Electronic energy + Delta-G solvation = -27550.134499 eV Core-core repulsion = 24053.562778 eV Total energy + Delta-G solvation = -3496.571721 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.26526 -40.02654 -38.84998 -35.50956 -34.92511 -34.32769 -32.90639 -31.55179 -31.16491 -28.88209 -27.45510 -27.18876 -25.81453 -23.33345 -23.13638 -22.42956 -21.43948 -21.16953 -19.82924 -18.66990 -17.82101 -17.52932 -16.75470 -16.35401 -16.17473 -16.01406 -15.69969 -15.52570 -15.26454 -14.74555 -14.54721 -14.33350 -14.05278 -14.04571 -13.53283 -13.42525 -13.31706 -13.23364 -13.13462 -12.89529 -12.83003 -12.77008 -12.65809 -12.62111 -12.19357 -12.07567 -11.96925 -11.66007 -11.62775 -11.31442 -11.25308 -11.04300 -10.86667 -10.70641 -10.35473 -9.74609 -9.57499 -9.27188 -8.22600 -6.31624 0.73759 0.79179 1.37495 1.41967 1.51299 2.01200 2.41703 2.62552 3.07241 3.26549 3.74761 3.82100 3.83112 4.15878 4.17653 4.20983 4.28784 4.36881 4.42610 4.47956 4.51294 4.55677 4.64050 4.72545 4.78131 4.83473 4.86947 4.87465 4.94092 4.96207 4.96728 5.05746 5.09020 5.12776 5.15133 5.30278 5.34891 5.36517 5.43609 5.46841 5.48302 5.51249 5.63147 5.65969 5.76831 5.80126 5.87552 5.96364 6.23370 6.39510 6.73075 6.86038 7.34484 7.62861 8.86046 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011531 B = 0.005071 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.630930 B = 5520.686508 C = 6493.495281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 H 0.046 0.954 4 C -0.114 4.114 5 C 0.140 3.860 6 H 0.062 0.938 7 N -0.709 5.709 8 C 0.526 3.474 9 O -0.596 6.596 10 C 0.049 3.951 11 H 0.066 0.934 12 C -0.509 4.509 13 H 0.049 0.951 14 C 0.037 3.963 15 N -0.905 5.905 16 Si 0.947 3.053 17 H -0.271 1.271 18 H -0.285 1.285 19 H -0.272 1.272 20 C -0.039 4.039 21 C -0.109 4.109 22 C -0.135 4.135 23 C -0.143 4.143 24 C -0.129 4.129 25 C -0.145 4.145 26 C -0.109 4.109 27 C -0.096 4.096 28 H 0.052 0.948 29 C -0.139 4.139 30 C -0.097 4.097 31 H 0.069 0.931 32 H 0.037 0.963 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.031 0.969 36 H 0.404 0.596 37 H 0.267 0.733 38 H 0.092 0.908 39 H 0.135 0.865 40 H 0.148 0.852 41 H 0.141 0.859 42 H 0.106 0.894 43 H 0.097 0.903 44 H 0.066 0.934 45 H 0.057 0.943 46 H 0.053 0.947 47 H 0.068 0.932 48 H 0.065 0.935 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.993 -10.054 -3.428 11.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 H 0.064 0.936 4 C -0.152 4.152 5 C 0.036 3.964 6 H 0.081 0.919 7 N -0.360 5.360 8 C 0.315 3.685 9 O -0.478 6.478 10 C 0.028 3.972 11 H 0.084 0.916 12 C -0.546 4.546 13 H 0.067 0.933 14 C -0.165 4.165 15 N -0.542 5.542 16 Si 0.773 3.227 17 H -0.195 1.195 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.040 4.040 21 C -0.128 4.128 22 C -0.153 4.153 23 C -0.161 4.161 24 C -0.146 4.146 25 C -0.163 4.163 26 C -0.146 4.146 27 C -0.115 4.115 28 H 0.070 0.930 29 C -0.196 4.196 30 C -0.134 4.134 31 H 0.088 0.912 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.050 0.950 36 H 0.241 0.759 37 H 0.076 0.924 38 H 0.111 0.889 39 H 0.153 0.847 40 H 0.165 0.835 41 H 0.158 0.842 42 H 0.124 0.876 43 H 0.115 0.885 44 H 0.084 0.916 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.087 0.913 48 H 0.083 0.917 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.053 -10.344 -2.808 11.459 hybrid contribution -0.272 1.309 -0.730 1.523 sum -4.325 -9.035 -3.538 10.623 Atomic orbital electron populations 1.21766 0.94627 1.02249 1.01152 1.21081 0.95969 0.99095 0.95113 0.93554 1.21860 0.94926 1.01176 0.97255 1.21002 0.94100 0.82188 0.99118 0.91934 1.45983 1.66885 1.14150 1.09022 1.21333 0.75520 0.88624 0.82993 1.90531 1.53321 1.70892 1.33049 1.18028 0.99365 0.88521 0.91265 0.91581 1.20689 0.92783 1.13603 1.27565 0.93273 1.25519 0.96268 0.98489 0.96210 1.69976 1.12340 1.30820 1.41094 0.85663 0.79573 0.78912 0.78540 1.19507 1.21075 1.19749 1.20159 0.93109 0.95422 0.95291 1.20822 0.97329 0.99655 0.94958 1.21329 0.99036 1.00180 0.94759 1.21276 0.91955 1.02056 1.00798 1.21309 0.99387 0.99982 0.93963 1.21152 0.97004 1.02000 0.96150 1.21812 1.00737 0.99960 0.92132 1.21145 0.95967 0.99209 0.95171 0.92990 1.21755 1.00915 1.00728 0.96248 1.21590 0.94336 1.01075 0.96441 0.91173 0.94385 0.92229 0.89455 0.95031 0.75948 0.92380 0.88933 0.84694 0.83452 0.84169 0.87551 0.88488 0.91570 0.92424 0.92740 0.91320 0.91661 0.90223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.19 71.98 0.66 -2.69 16 2 C -0.09 -2.55 2.56 -10.79 -0.03 -2.58 16 3 H 0.05 1.58 7.60 -2.39 -0.02 1.57 16 4 C -0.11 -3.33 4.88 30.60 0.15 -3.18 16 5 C 0.14 4.37 2.78 44.99 0.13 4.49 16 6 H 0.06 2.17 7.58 -2.39 -0.02 2.15 16 7 N -0.71 -27.19 4.13 -442.53 -1.83 -29.02 16 8 C 0.53 24.60 7.01 87.66 0.61 25.21 16 9 O -0.60 -30.38 15.08 -3.03 -0.05 -30.42 16 10 C 0.05 2.48 2.45 -13.03 -0.03 2.45 16 11 H 0.07 3.57 7.00 -2.39 -0.02 3.56 16 12 C -0.51 -26.42 7.46 25.60 0.19 -26.23 16 13 H 0.05 2.62 7.82 -2.91 -0.02 2.60 16 14 C 0.04 1.92 5.45 84.65 0.46 2.38 16 15 N -0.91 -48.87 12.78 21.45 0.27 -48.60 16 16 Si 0.95 41.79 29.54 68.60 2.03 43.81 16 17 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 20 C -0.04 -1.91 4.30 -19.87 -0.09 -1.99 16 21 C -0.11 -5.11 8.31 22.27 0.19 -4.92 16 22 C -0.14 -5.24 10.05 22.27 0.22 -5.02 16 23 C -0.14 -5.00 10.05 22.27 0.22 -4.78 16 24 C -0.13 -4.81 10.05 22.27 0.22 -4.59 16 25 C -0.14 -6.53 9.67 22.27 0.22 -6.31 16 26 C -0.11 -2.50 4.89 30.59 0.15 -2.35 16 27 C -0.10 -2.14 2.55 -10.78 -0.03 -2.16 16 28 H 0.05 1.40 6.51 -2.39 -0.02 1.39 16 29 C -0.14 -2.44 9.19 71.98 0.66 -1.78 16 30 C -0.10 -2.06 4.49 30.61 0.14 -1.93 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.40 15.34 6.75 -92.70 -0.63 14.71 16 37 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 38 H 0.09 4.51 7.89 -2.91 -0.02 4.49 16 39 H 0.14 4.33 8.06 -2.91 -0.02 4.30 16 40 H 0.15 3.90 8.06 -2.91 -0.02 3.87 16 41 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 42 H 0.11 4.74 7.95 -2.91 -0.02 4.72 16 43 H 0.10 1.76 8.14 -2.39 -0.02 1.75 16 44 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 49 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -62.72 387.47 4.76 -57.96 By element: Atomic # 1 Polarization: 41.95 SS G_CDS: 0.28 Total: 42.24 kcal Atomic # 6 Polarization: -40.02 SS G_CDS: 4.05 Total: -35.97 kcal Atomic # 7 Polarization: -76.06 SS G_CDS: -1.55 Total: -77.62 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -0.05 Total: -30.42 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.81 kcal Total: -62.72 4.76 -57.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265331116.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.530 kcal (2) G-P(sol) polarization free energy of solvation -62.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds