Wall clock time and date at job start Tue Mar 31 2020 10:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47360 * 2 1 4 4 C 1.53001 * 109.47079 * 120.00101 * 2 1 3 5 5 C 1.52996 * 109.47079 * 180.02562 * 4 2 1 6 6 H 1.09000 * 109.47066 * 179.97438 * 5 4 2 7 7 N 1.46497 * 109.47424 * 59.99879 * 5 4 2 8 8 C 1.34775 * 120.00377 * 84.99821 * 7 5 4 9 9 O 1.21285 * 119.99869 * 0.02562 * 8 7 5 10 10 C 1.50697 * 120.00424 * 180.02562 * 8 7 5 11 11 H 1.09001 * 109.47058 * 60.00135 * 10 8 7 12 12 C 1.50700 * 109.47194 * 300.00036 * 10 8 7 13 13 H 1.07995 * 119.99796 * 325.10103 * 12 10 8 14 14 C 1.37874 * 119.99902 * 145.09855 * 12 10 8 15 15 N 1.31518 * 119.99801 * 184.98750 * 14 12 10 16 16 Si 1.86801 * 120.00131 * 4.98022 * 14 12 10 17 17 H 1.48508 * 109.46667 * 84.67396 * 16 14 12 18 18 H 1.48494 * 109.47194 * 204.66752 * 16 14 12 19 19 H 1.48494 * 109.47376 * 324.67433 * 16 14 12 20 20 C 1.50701 * 109.47399 * 179.97438 * 10 8 7 21 21 C 1.38241 * 119.99697 * 65.02316 * 20 10 8 22 22 C 1.38237 * 119.99893 * 179.76876 * 21 20 10 23 23 C 1.38230 * 120.00071 * 0.48366 * 22 21 20 24 24 C 1.38238 * 119.99834 * 359.78896 * 23 22 21 25 25 C 1.38231 * 120.00392 * 245.29751 * 20 10 8 26 26 C 1.52998 * 109.47115 * 299.99943 * 5 4 2 27 27 C 1.52992 * 109.47612 * 59.99877 * 26 5 4 28 28 H 1.09005 * 109.47283 * 59.99922 * 27 26 5 29 29 C 1.52998 * 109.47612 * 179.97438 * 27 26 5 30 30 C 1.52995 * 109.47015 * 239.99674 * 2 1 3 31 31 H 1.09006 * 109.47398 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47110 * 300.00261 * 1 2 3 33 33 H 1.09000 * 109.47066 * 60.00253 * 1 2 3 34 34 H 1.08998 * 109.47107 * 59.99744 * 4 2 1 35 35 H 1.09002 * 109.46854 * 299.99795 * 4 2 1 36 36 H 0.96998 * 120.00036 * 265.27511 * 7 5 4 37 37 H 0.97003 * 119.99599 * 179.97438 * 15 14 12 38 38 H 1.07995 * 119.99780 * 359.97438 * 21 20 10 39 39 H 1.08002 * 119.99602 * 180.25292 * 22 21 20 40 40 H 1.07997 * 120.00228 * 179.76948 * 23 22 21 41 41 H 1.08003 * 119.99966 * 179.97438 * 24 23 22 42 42 H 1.07999 * 120.00093 * 359.97438 * 25 20 10 43 43 H 1.09003 * 109.47068 * 180.02562 * 26 5 4 44 44 H 1.09005 * 109.46860 * 299.99541 * 26 5 4 45 45 H 1.08998 * 109.46971 * 60.00317 * 29 27 26 46 46 H 1.09000 * 109.47395 * 180.02562 * 29 27 26 47 47 H 1.08994 * 109.47073 * 300.00274 * 29 27 26 48 48 H 1.09000 * 109.47144 * 60.00121 * 30 2 1 49 49 H 1.08997 * 109.47500 * 299.99825 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5699 -0.7207 1.2496 6 1 3.9332 -1.2342 2.1398 7 7 4.0578 0.6606 1.2499 8 6 4.1861 1.3298 2.4127 9 8 3.8980 0.7882 3.4590 10 6 4.6874 2.7509 2.4130 11 1 4.0144 3.3737 1.8236 12 6 6.0689 2.7964 1.8125 13 1 6.7550 1.9783 1.9742 14 6 6.4567 3.8825 1.0569 15 7 7.6244 3.8793 0.4519 16 14 5.3234 5.3583 0.8921 17 1 5.5207 6.2656 2.0511 18 1 5.6367 6.0851 -0.3643 19 1 3.9122 4.8975 0.8588 20 6 4.7371 3.2659 3.8284 21 6 5.6070 2.6978 4.7404 22 6 5.6560 3.1733 6.0375 23 6 4.8282 4.2101 6.4253 24 6 3.9544 4.7744 5.5148 25 6 3.9090 4.3024 4.2164 26 6 4.0804 -1.4416 0.0003 27 6 3.5705 -0.7205 -1.2489 28 1 3.9334 0.3074 -1.2488 29 6 4.0815 -1.4409 -2.4981 30 6 2.0399 -0.7213 -1.2492 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.6766 -1.7489 1.2492 35 1 1.6766 -0.2074 2.1392 36 1 4.2848 1.0950 0.4128 37 1 7.8971 4.6433 -0.0801 38 1 6.2505 1.8847 4.4385 39 1 6.3385 2.7321 6.7488 40 1 4.8639 4.5791 7.4396 41 1 3.3073 5.5843 5.8180 42 1 3.2266 4.7436 3.5050 43 1 5.1705 -1.4416 0.0008 44 1 3.7175 -2.4694 0.0002 45 1 3.7189 -2.4688 -2.4986 46 1 3.7186 -0.9269 -3.3881 47 1 5.1715 -1.4402 -2.4976 48 1 1.6766 -0.2075 -2.1392 49 1 1.6766 -1.7490 -1.2491 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265331119.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:07 Heat of formation + Delta-G solvation = -48.089694 kcal Electronic energy + Delta-G solvation = -27494.737043 eV Core-core repulsion = 23998.876571 eV Total energy + Delta-G solvation = -3495.860473 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.94229 -38.72382 -37.43091 -33.65554 -33.58961 -33.37824 -31.50143 -30.10552 -29.92011 -27.53341 -26.60822 -26.21250 -23.67934 -22.02885 -21.79663 -21.15467 -20.48553 -19.63345 -18.57183 -17.12088 -16.40150 -16.04203 -15.46660 -15.10117 -14.89613 -14.50718 -14.36609 -14.10521 -13.90844 -13.46936 -13.09572 -13.04228 -12.72351 -12.65454 -12.46847 -12.35554 -12.22714 -12.02783 -11.97384 -11.74267 -11.67896 -11.62235 -11.15200 -11.07339 -10.98923 -10.69258 -10.44688 -10.34811 -10.20568 -10.04862 -9.90301 -9.83043 -9.50252 -8.94347 -8.64875 -8.30719 -8.10489 -7.77805 -6.29690 -4.33225 2.18225 2.24680 3.15075 3.22987 3.27857 3.66088 4.02202 4.22552 4.66796 4.72040 4.80447 4.82585 5.02141 5.11584 5.18929 5.40450 5.46563 5.57138 5.57541 5.62334 5.64094 5.70192 5.74097 5.74782 5.84935 5.87272 5.92580 5.94625 5.95657 5.98998 6.06681 6.15295 6.21533 6.31309 6.34220 6.35547 6.40943 6.48111 6.50555 6.52352 6.58160 6.77898 6.88293 7.19453 7.23792 7.28299 7.33420 7.62242 7.82892 8.22186 8.38408 8.71265 9.20124 9.28780 10.81291 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012347 B = 0.004963 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.178636 B = 5640.837383 C = 6561.557453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 H 0.073 0.927 4 C -0.122 4.122 5 C 0.147 3.853 6 H 0.082 0.918 7 N -0.719 5.719 8 C 0.536 3.464 9 O -0.564 6.564 10 C 0.017 3.983 11 H 0.071 0.929 12 C -0.508 4.508 13 H 0.082 0.918 14 C 0.085 3.915 15 N -0.883 5.883 16 Si 0.865 3.135 17 H -0.267 1.267 18 H -0.286 1.286 19 H -0.262 1.262 20 C -0.026 4.026 21 C -0.072 4.072 22 C -0.129 4.129 23 C -0.144 4.144 24 C -0.129 4.129 25 C -0.138 4.138 26 C -0.119 4.119 27 C -0.096 4.096 28 H 0.074 0.926 29 C -0.145 4.145 30 C -0.105 4.105 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.403 0.597 37 H 0.268 0.732 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.070 0.930 44 H 0.070 0.930 45 H 0.051 0.949 46 H 0.052 0.948 47 H 0.056 0.944 48 H 0.058 0.942 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.169 -6.764 -2.297 12.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.091 0.909 4 C -0.161 4.161 5 C 0.041 3.959 6 H 0.100 0.900 7 N -0.372 5.372 8 C 0.325 3.675 9 O -0.442 6.442 10 C -0.004 4.004 11 H 0.089 0.911 12 C -0.546 4.546 13 H 0.100 0.900 14 C -0.119 4.119 15 N -0.519 5.519 16 Si 0.692 3.308 17 H -0.192 1.192 18 H -0.212 1.212 19 H -0.187 1.187 20 C -0.027 4.027 21 C -0.091 4.091 22 C -0.147 4.147 23 C -0.162 4.162 24 C -0.147 4.147 25 C -0.156 4.156 26 C -0.157 4.157 27 C -0.115 4.115 28 H 0.093 0.907 29 C -0.202 4.202 30 C -0.143 4.143 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.239 0.761 37 H 0.078 0.922 38 H 0.134 0.866 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.219 -7.050 -1.691 12.530 hybrid contribution -0.279 1.191 -0.538 1.336 sum -10.498 -5.860 -2.229 12.228 Atomic orbital electron populations 1.21808 0.95674 1.01315 1.01403 1.21112 0.94981 1.00325 0.94797 0.90878 1.21965 0.95864 1.00317 0.97957 1.20776 0.93018 0.83769 0.98312 0.90025 1.45982 1.67838 1.13343 1.10041 1.21063 0.74611 0.89179 0.82650 1.90583 1.51233 1.70610 1.31824 1.18587 0.99631 0.90406 0.91797 0.91122 1.20532 0.95864 1.06909 1.31261 0.90005 1.24972 0.95048 0.97707 0.94221 1.69867 1.20255 1.30866 1.30905 0.87038 0.81639 0.83840 0.78299 1.19198 1.21174 1.18715 1.20082 0.92926 0.94015 0.95642 1.20835 0.97321 0.98684 0.92210 1.21029 0.99615 0.97645 0.96457 1.20851 0.98261 0.98356 0.98748 1.20876 0.99712 1.00214 0.93880 1.20966 0.99932 0.98726 0.95957 1.21851 1.01263 0.99003 0.93600 1.21154 0.95349 1.00328 0.94628 0.90733 1.21802 1.01211 0.99988 0.97223 1.21651 0.94912 1.00337 0.97392 0.93027 0.92855 0.93016 0.91819 0.91520 0.76071 0.92172 0.86560 0.87168 0.87370 0.87326 0.87509 0.91083 0.91154 0.93016 0.92879 0.92486 0.92280 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.19 37.16 0.34 -1.21 16 2 C -0.09 -1.14 2.56 -90.62 -0.23 -1.37 16 3 H 0.07 1.02 7.60 -51.93 -0.39 0.63 16 4 C -0.12 -1.65 4.88 -26.73 -0.13 -1.78 16 5 C 0.15 2.20 2.78 -67.94 -0.19 2.01 16 6 H 0.08 1.37 7.58 -51.93 -0.39 0.97 16 7 N -0.72 -12.85 4.13 -53.81 -0.22 -13.07 16 8 C 0.54 11.48 7.00 -10.99 -0.08 11.40 16 9 O -0.56 -13.18 15.03 5.55 0.08 -13.10 16 10 C 0.02 0.39 1.89 -94.08 -0.18 0.21 16 11 H 0.07 1.58 4.89 -51.93 -0.25 1.33 16 12 C -0.51 -12.97 8.07 -34.44 -0.28 -13.25 16 13 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 14 C 0.09 2.24 5.47 -17.82 -0.10 2.14 16 15 N -0.88 -24.81 13.96 55.43 0.77 -24.03 16 16 Si 0.86 19.97 27.18 -169.99 -4.62 15.35 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.26 -5.63 6.06 56.52 0.34 -5.29 16 20 C -0.03 -0.58 4.09 -104.62 -0.43 -1.01 16 21 C -0.07 -1.59 8.25 -39.58 -0.33 -1.92 16 22 C -0.13 -2.48 10.05 -39.58 -0.40 -2.87 16 23 C -0.14 -2.56 10.05 -39.58 -0.40 -2.96 16 24 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 25 C -0.14 -2.84 9.46 -39.59 -0.37 -3.22 16 26 C -0.12 -1.48 4.89 -26.74 -0.13 -1.61 16 27 C -0.10 -1.12 2.55 -90.60 -0.23 -1.35 16 28 H 0.07 0.98 6.50 -51.93 -0.34 0.64 16 29 C -0.14 -1.48 9.20 37.16 0.34 -1.14 16 30 C -0.11 -1.13 4.49 -26.70 -0.12 -1.25 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.40 7.06 6.76 -40.82 -0.28 6.79 16 37 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 38 H 0.12 2.65 7.93 -52.49 -0.42 2.23 16 39 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 41 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 42 H 0.11 2.05 7.95 -52.49 -0.42 1.64 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 382.94 15.07 5.77 5.77 Total: -1.00 -28.90 382.94 -9.96 -38.87 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -8.45 Total: 12.15 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -3.30 Total: -21.93 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.55 Total: -37.10 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: 0.08 Total: -13.10 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.62 Total: 15.35 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.90 -9.96 -38.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265331119.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.222 kcal (2) G-P(sol) polarization free energy of solvation -28.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds