Wall clock time and date at job start Tue Mar 31 2020 10:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47360 * 2 1 4 4 C 1.53001 * 109.47079 * 120.00101 * 2 1 3 5 5 C 1.52996 * 109.47079 * 180.02562 * 4 2 1 6 6 H 1.09000 * 109.47066 * 179.97438 * 5 4 2 7 7 N 1.46497 * 109.47424 * 59.99879 * 5 4 2 8 8 C 1.34775 * 120.00377 * 84.99821 * 7 5 4 9 9 O 1.21285 * 119.99869 * 0.02562 * 8 7 5 10 10 C 1.50697 * 120.00424 * 180.02562 * 8 7 5 11 11 H 1.09001 * 109.47058 * 60.00135 * 10 8 7 12 12 C 1.50700 * 109.47194 * 300.00036 * 10 8 7 13 13 H 1.07995 * 119.99796 * 325.10103 * 12 10 8 14 14 C 1.37874 * 119.99902 * 145.09855 * 12 10 8 15 15 N 1.31518 * 119.99801 * 184.98750 * 14 12 10 16 16 Si 1.86801 * 120.00131 * 4.98022 * 14 12 10 17 17 H 1.48508 * 109.46667 * 84.67396 * 16 14 12 18 18 H 1.48494 * 109.47194 * 204.66752 * 16 14 12 19 19 H 1.48494 * 109.47376 * 324.67433 * 16 14 12 20 20 C 1.50701 * 109.47399 * 179.97438 * 10 8 7 21 21 C 1.38241 * 119.99697 * 65.02316 * 20 10 8 22 22 C 1.38237 * 119.99893 * 179.76876 * 21 20 10 23 23 C 1.38230 * 120.00071 * 0.48366 * 22 21 20 24 24 C 1.38238 * 119.99834 * 359.78896 * 23 22 21 25 25 C 1.38231 * 120.00392 * 245.29751 * 20 10 8 26 26 C 1.52998 * 109.47115 * 299.99943 * 5 4 2 27 27 C 1.52992 * 109.47612 * 59.99877 * 26 5 4 28 28 H 1.09005 * 109.47283 * 59.99922 * 27 26 5 29 29 C 1.52998 * 109.47612 * 179.97438 * 27 26 5 30 30 C 1.52995 * 109.47015 * 239.99674 * 2 1 3 31 31 H 1.09006 * 109.47398 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47110 * 300.00261 * 1 2 3 33 33 H 1.09000 * 109.47066 * 60.00253 * 1 2 3 34 34 H 1.08998 * 109.47107 * 59.99744 * 4 2 1 35 35 H 1.09002 * 109.46854 * 299.99795 * 4 2 1 36 36 H 0.96998 * 120.00036 * 265.27511 * 7 5 4 37 37 H 0.97003 * 119.99599 * 179.97438 * 15 14 12 38 38 H 1.07995 * 119.99780 * 359.97438 * 21 20 10 39 39 H 1.08002 * 119.99602 * 180.25292 * 22 21 20 40 40 H 1.07997 * 120.00228 * 179.76948 * 23 22 21 41 41 H 1.08003 * 119.99966 * 179.97438 * 24 23 22 42 42 H 1.07999 * 120.00093 * 359.97438 * 25 20 10 43 43 H 1.09003 * 109.47068 * 180.02562 * 26 5 4 44 44 H 1.09005 * 109.46860 * 299.99541 * 26 5 4 45 45 H 1.08998 * 109.46971 * 60.00317 * 29 27 26 46 46 H 1.09000 * 109.47395 * 180.02562 * 29 27 26 47 47 H 1.08994 * 109.47073 * 300.00274 * 29 27 26 48 48 H 1.09000 * 109.47144 * 60.00121 * 30 2 1 49 49 H 1.08997 * 109.47500 * 299.99825 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5699 -0.7207 1.2496 6 1 3.9332 -1.2342 2.1398 7 7 4.0578 0.6606 1.2499 8 6 4.1861 1.3298 2.4127 9 8 3.8980 0.7882 3.4590 10 6 4.6874 2.7509 2.4130 11 1 4.0144 3.3737 1.8236 12 6 6.0689 2.7964 1.8125 13 1 6.7550 1.9783 1.9742 14 6 6.4567 3.8825 1.0569 15 7 7.6244 3.8793 0.4519 16 14 5.3234 5.3583 0.8921 17 1 5.5207 6.2656 2.0511 18 1 5.6367 6.0851 -0.3643 19 1 3.9122 4.8975 0.8588 20 6 4.7371 3.2659 3.8284 21 6 5.6070 2.6978 4.7404 22 6 5.6560 3.1733 6.0375 23 6 4.8282 4.2101 6.4253 24 6 3.9544 4.7744 5.5148 25 6 3.9090 4.3024 4.2164 26 6 4.0804 -1.4416 0.0003 27 6 3.5705 -0.7205 -1.2489 28 1 3.9334 0.3074 -1.2488 29 6 4.0815 -1.4409 -2.4981 30 6 2.0399 -0.7213 -1.2492 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.6766 -1.7489 1.2492 35 1 1.6766 -0.2074 2.1392 36 1 4.2848 1.0950 0.4128 37 1 7.8971 4.6433 -0.0801 38 1 6.2505 1.8847 4.4385 39 1 6.3385 2.7321 6.7488 40 1 4.8639 4.5791 7.4396 41 1 3.3073 5.5843 5.8180 42 1 3.2266 4.7436 3.5050 43 1 5.1705 -1.4416 0.0008 44 1 3.7175 -2.4694 0.0002 45 1 3.7189 -2.4688 -2.4986 46 1 3.7186 -0.9269 -3.3881 47 1 5.1715 -1.4402 -2.4976 48 1 1.6766 -0.2075 -2.1392 49 1 1.6766 -1.7490 -1.2491 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265331119.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:06 Heat of formation + Delta-G solvation = -62.324962 kcal Electronic energy + Delta-G solvation = -27495.354331 eV Core-core repulsion = 23998.876571 eV Total energy + Delta-G solvation = -3496.477760 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.35964 -40.13332 -38.92297 -35.52400 -34.97883 -34.34469 -33.35840 -31.63954 -31.22975 -29.22384 -27.45735 -27.20441 -25.57336 -23.46210 -23.22872 -22.48703 -21.45602 -21.15575 -19.86831 -19.11647 -18.01244 -17.62957 -16.80084 -16.41295 -16.25634 -15.91749 -15.83201 -15.56804 -15.22559 -14.87372 -14.55895 -14.46886 -14.32517 -14.11595 -13.79711 -13.58529 -13.43264 -13.29589 -13.14567 -12.98487 -12.85748 -12.73211 -12.66247 -12.63708 -12.09596 -12.04260 -11.97171 -11.65567 -11.63838 -11.41201 -11.31834 -11.06581 -10.90674 -10.87564 -10.48130 -9.81422 -9.65275 -9.37280 -8.35775 -6.43006 0.63271 0.69948 1.29727 1.37135 1.40982 1.92681 2.27913 2.53170 2.95766 3.15397 3.72428 3.80033 3.80407 4.07926 4.13487 4.15417 4.21001 4.27979 4.35607 4.37963 4.45662 4.50289 4.54905 4.60295 4.71153 4.78342 4.80983 4.82860 4.85231 4.89356 4.94369 4.95031 5.04792 5.07942 5.14825 5.19611 5.28975 5.30974 5.33912 5.39084 5.44341 5.47225 5.48887 5.61796 5.68523 5.72506 5.81265 5.94051 6.19883 6.29740 6.58907 6.76247 7.21713 7.52126 8.78726 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012347 B = 0.004963 C = 0.004266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.178636 B = 5640.837383 C = 6561.557453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 H 0.050 0.950 4 C -0.114 4.114 5 C 0.141 3.859 6 H 0.059 0.941 7 N -0.710 5.710 8 C 0.532 3.468 9 O -0.588 6.588 10 C 0.021 3.979 11 H 0.075 0.925 12 C -0.498 4.498 13 H 0.037 0.963 14 C 0.038 3.962 15 N -0.929 5.929 16 Si 0.920 3.080 17 H -0.269 1.269 18 H -0.282 1.282 19 H -0.237 1.237 20 C -0.055 4.055 21 C -0.103 4.103 22 C -0.133 4.133 23 C -0.137 4.137 24 C -0.125 4.125 25 C -0.154 4.154 26 C -0.112 4.112 27 C -0.096 4.096 28 H 0.052 0.948 29 C -0.141 4.141 30 C -0.098 4.098 31 H 0.066 0.934 32 H 0.043 0.957 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.039 0.961 36 H 0.404 0.596 37 H 0.270 0.730 38 H 0.088 0.912 39 H 0.134 0.866 40 H 0.151 0.849 41 H 0.148 0.852 42 H 0.119 0.881 43 H 0.055 0.945 44 H 0.097 0.903 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.047 0.953 48 H 0.070 0.930 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.819 -6.273 -2.197 14.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 H 0.068 0.932 4 C -0.153 4.153 5 C 0.037 3.963 6 H 0.077 0.923 7 N -0.361 5.361 8 C 0.320 3.680 9 O -0.469 6.469 10 C -0.001 4.001 11 H 0.093 0.907 12 C -0.535 4.535 13 H 0.055 0.945 14 C -0.162 4.162 15 N -0.567 5.567 16 Si 0.744 3.256 17 H -0.194 1.194 18 H -0.207 1.207 19 H -0.161 1.161 20 C -0.056 4.056 21 C -0.122 4.122 22 C -0.151 4.151 23 C -0.155 4.155 24 C -0.142 4.142 25 C -0.172 4.172 26 C -0.149 4.149 27 C -0.115 4.115 28 H 0.071 0.929 29 C -0.198 4.198 30 C -0.135 4.135 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.081 0.919 34 H 0.106 0.894 35 H 0.058 0.942 36 H 0.241 0.759 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.152 0.848 40 H 0.168 0.832 41 H 0.166 0.834 42 H 0.137 0.863 43 H 0.074 0.926 44 H 0.115 0.885 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.066 0.934 48 H 0.089 0.911 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.889 -6.587 -1.609 14.563 hybrid contribution 0.599 0.957 -0.462 1.220 sum -12.290 -5.629 -2.072 13.676 Atomic orbital electron populations 1.21768 0.94118 1.02380 1.01508 1.21093 0.96267 0.99002 0.94787 0.93195 1.21883 0.94097 1.01613 0.97662 1.20998 0.94488 0.81971 0.98878 0.92286 1.45987 1.66676 1.14426 1.08997 1.20925 0.74769 0.89064 0.83225 1.90551 1.52640 1.70955 1.32772 1.18503 0.97652 0.91427 0.92490 0.90721 1.20432 0.96586 1.05467 1.31049 0.94455 1.25661 0.96372 1.00307 0.93890 1.69993 1.22337 1.31936 1.32392 0.86147 0.81164 0.80229 0.78093 1.19405 1.20723 1.16054 1.20106 0.94562 0.95513 0.95375 1.20810 0.98093 0.99147 0.94117 1.21356 1.00231 0.98018 0.95484 1.21344 0.96615 0.96898 1.00612 1.21361 0.99639 1.00493 0.92734 1.21226 0.99985 0.98331 0.97694 1.21816 1.00362 1.00123 0.92640 1.21143 0.96351 0.99141 0.94821 0.92944 1.21762 1.00643 1.00859 0.96538 1.21604 0.93716 1.01334 0.96827 0.91459 0.93825 0.91889 0.89397 0.94242 0.75936 0.92073 0.89397 0.84774 0.83159 0.83407 0.86323 0.92586 0.88501 0.91286 0.92047 0.93425 0.91149 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.19 71.98 0.66 -2.05 16 2 C -0.09 -2.15 2.56 -10.80 -0.03 -2.18 16 3 H 0.05 1.39 7.60 -2.39 -0.02 1.37 16 4 C -0.11 -3.03 4.88 30.59 0.15 -2.88 16 5 C 0.14 4.36 2.78 44.99 0.13 4.48 16 6 H 0.06 2.09 7.58 -2.39 -0.02 2.07 16 7 N -0.71 -26.73 4.13 -442.55 -1.83 -28.56 16 8 C 0.53 24.02 7.00 87.66 0.61 24.63 16 9 O -0.59 -28.97 15.03 -3.04 -0.05 -29.01 16 10 C 0.02 0.98 1.89 -13.03 -0.02 0.95 16 11 H 0.08 3.38 4.89 -2.39 -0.01 3.37 16 12 C -0.50 -26.87 8.07 25.60 0.21 -26.66 16 13 H 0.04 2.29 8.06 -2.91 -0.02 2.27 16 14 C 0.04 2.07 5.47 84.65 0.46 2.54 16 15 N -0.93 -54.35 13.96 21.45 0.30 -54.05 16 16 Si 0.92 41.33 27.18 68.60 1.86 43.20 16 17 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.24 -9.57 6.06 99.48 0.60 -8.97 16 20 C -0.05 -2.51 4.09 -19.87 -0.08 -2.59 16 21 C -0.10 -4.72 8.25 22.27 0.18 -4.53 16 22 C -0.13 -4.97 10.05 22.27 0.22 -4.75 16 23 C -0.14 -4.42 10.05 22.27 0.22 -4.20 16 24 C -0.12 -4.16 10.05 22.27 0.22 -3.94 16 25 C -0.15 -6.16 9.46 22.27 0.21 -5.95 16 26 C -0.11 -2.73 4.89 30.59 0.15 -2.58 16 27 C -0.10 -2.13 2.55 -10.78 -0.03 -2.16 16 28 H 0.05 1.40 6.50 -2.38 -0.02 1.38 16 29 C -0.14 -2.63 9.20 71.98 0.66 -1.96 16 30 C -0.10 -1.86 4.49 30.61 0.14 -1.72 16 31 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.40 14.99 6.76 -92.71 -0.63 14.36 16 37 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 38 H 0.09 4.36 7.93 -2.91 -0.02 4.34 16 39 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 40 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 41 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 42 H 0.12 4.33 7.95 -2.91 -0.02 4.31 16 43 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 45 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 49 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -66.56 382.94 4.55 -62.02 By element: Atomic # 1 Polarization: 41.77 SS G_CDS: 0.18 Total: 41.96 kcal Atomic # 6 Polarization: -39.63 SS G_CDS: 4.07 Total: -35.55 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -1.53 Total: -82.60 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.05 Total: -29.01 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 1.86 Total: 43.20 kcal Total: -66.56 4.55 -62.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265331119.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.309 kcal (2) G-P(sol) polarization free energy of solvation -66.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds