Wall clock time and date at job start Tue Mar 31 2020 10:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47309 * 2 1 4 4 C 1.53007 * 109.47019 * 240.00161 * 2 1 3 5 5 C 1.52995 * 109.47032 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47527 * 60.00127 * 5 4 2 7 7 H 1.09000 * 109.47721 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.46900 * 59.99478 * 6 5 4 9 9 C 1.34783 * 119.99534 * 85.00572 * 8 6 5 10 10 O 1.21280 * 119.99800 * 359.97438 * 9 8 6 11 11 C 1.50700 * 119.99956 * 179.97438 * 9 8 6 12 12 H 1.08997 * 109.46918 * 300.00326 * 11 9 8 13 13 C 1.50701 * 109.46897 * 59.99768 * 11 9 8 14 14 H 1.08004 * 119.99949 * 235.35520 * 13 11 9 15 15 C 1.37875 * 119.99830 * 55.36059 * 13 11 9 16 16 N 1.31514 * 120.00209 * 1.97903 * 15 13 11 17 17 Si 1.86804 * 120.00072 * 181.98370 * 15 13 11 18 18 H 1.48503 * 109.46713 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47250 * 119.99647 * 17 15 13 20 20 H 1.48502 * 109.47175 * 239.99945 * 17 15 13 21 21 C 1.50697 * 109.47230 * 180.02562 * 11 9 8 22 22 C 1.38236 * 119.99897 * 226.92347 * 21 11 9 23 23 C 1.38231 * 120.00048 * 179.74254 * 22 21 11 24 24 C 1.38236 * 119.99688 * 0.55002 * 23 22 21 25 25 C 1.38239 * 120.00159 * 359.70417 * 24 23 22 26 26 C 1.38227 * 119.99871 * 47.19635 * 21 11 9 27 27 C 1.53007 * 109.46861 * 299.99978 * 6 5 4 28 28 C 1.52998 * 109.47105 * 120.00383 * 2 1 3 29 29 H 1.09000 * 109.47350 * 59.99642 * 28 2 1 30 30 C 1.53001 * 109.47263 * 299.99953 * 28 2 1 31 31 H 1.08995 * 109.46856 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46851 * 299.99577 * 1 2 3 33 33 H 1.08996 * 109.47206 * 59.99889 * 1 2 3 34 34 H 1.09001 * 109.46762 * 60.00161 * 4 2 1 35 35 H 1.09000 * 109.46949 * 300.00059 * 4 2 1 36 36 H 1.09000 * 109.47238 * 299.99804 * 5 4 2 37 37 H 1.08997 * 109.47357 * 180.02562 * 5 4 2 38 38 H 0.97001 * 120.00147 * 265.00402 * 8 6 5 39 39 H 0.97004 * 120.00234 * 180.02562 * 16 15 13 40 40 H 1.08006 * 119.99833 * 0.02562 * 22 21 11 41 41 H 1.07996 * 120.00265 * 180.27277 * 23 22 21 42 42 H 1.08000 * 119.99804 * 179.72550 * 24 23 22 43 43 H 1.07997 * 119.99834 * 179.97438 * 25 24 23 44 44 H 1.08000 * 120.00583 * 359.97438 * 26 21 11 45 45 H 1.09001 * 109.46762 * 179.97438 * 27 6 5 46 46 H 1.08995 * 109.47206 * 300.00135 * 27 6 5 47 47 H 1.09000 * 109.46893 * 59.99767 * 30 28 2 48 48 H 1.08996 * 109.47434 * 180.02562 * 30 28 2 49 49 H 1.09000 * 109.46683 * 300.00097 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2490 6 6 4.0796 -1.4435 0.0002 7 1 5.1696 -1.4435 0.0007 8 7 3.5906 -2.8245 -0.0002 9 6 4.2673 -3.7787 -0.6697 10 8 5.2806 -3.4938 -1.2722 11 6 3.7648 -5.1994 -0.6697 12 1 3.7281 -5.5717 0.3541 13 6 2.3832 -5.2435 -1.2700 14 1 1.5659 -5.6771 -0.7127 15 6 2.1626 -4.7305 -2.5306 16 7 3.1651 -4.2380 -3.2248 17 14 0.4397 -4.7349 -3.2524 18 1 -0.5036 -5.3400 -2.2781 19 1 0.0222 -3.3402 -3.5455 20 1 0.4309 -5.5284 -4.5076 21 6 4.6947 -6.0612 -1.4841 22 6 4.1810 -6.9416 -2.4179 23 6 5.0343 -7.7284 -3.1688 24 6 6.4007 -7.6429 -2.9779 25 6 6.9142 -6.7663 -2.0404 26 6 6.0611 -5.9755 -1.2935 27 6 3.5696 -0.7222 1.2495 28 6 2.0400 -0.7213 1.2492 29 1 1.6767 -1.7490 1.2492 30 6 1.5301 -0.0002 2.4985 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.6767 -0.2073 -2.1392 35 1 1.6767 -1.7489 -1.2493 36 1 3.9337 0.3057 -1.2488 37 1 3.9334 -1.2352 -2.1392 38 1 2.7800 -3.0521 0.4815 39 1 3.0099 -3.8768 -4.1116 40 1 3.1132 -7.0115 -2.5640 41 1 4.6332 -8.4130 -3.9014 42 1 7.0672 -8.2608 -3.5614 43 1 7.9817 -6.6998 -1.8910 44 1 6.4623 -5.2905 -0.5612 45 1 3.9322 -1.2366 2.1394 46 1 3.9332 0.3053 1.2497 47 1 0.4401 -0.0001 2.4984 48 1 1.8937 -0.5138 3.3884 49 1 1.8934 1.0275 2.4985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267935827.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:04 Heat of formation + Delta-G solvation = -40.559375 kcal Electronic energy + Delta-G solvation = -28168.607340 eV Core-core repulsion = 24673.073407 eV Total energy + Delta-G solvation = -3495.533934 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.65065 -38.45191 -37.02298 -33.82814 -33.51389 -31.89890 -30.82897 -30.36242 -29.62898 -27.35140 -26.74951 -25.16089 -23.83477 -21.59459 -21.26981 -21.02195 -20.31736 -19.48622 -18.34485 -16.79971 -15.95649 -15.26475 -15.11334 -14.81915 -14.76994 -14.20775 -14.06042 -13.82249 -13.62904 -13.58877 -13.15761 -12.72525 -12.49777 -12.27208 -12.16030 -11.92310 -11.91213 -11.74667 -11.57880 -11.45632 -11.29204 -11.13690 -11.07199 -10.97506 -10.73346 -10.59587 -10.40262 -10.08712 -10.01042 -9.75755 -9.63674 -9.52721 -9.31112 -8.67062 -8.21350 -7.85117 -7.64094 -7.34774 -6.09622 -4.25276 2.59377 2.65564 3.19298 3.30577 3.31085 4.20250 4.31451 4.50347 4.87769 4.94450 4.97105 5.07505 5.18131 5.27617 5.54147 5.59937 5.64593 5.70209 5.79471 5.82463 5.89052 5.90906 5.96754 6.01302 6.01879 6.09132 6.10703 6.14309 6.22757 6.30852 6.34025 6.45125 6.50047 6.58659 6.66593 6.71174 6.74203 6.86648 6.91481 6.94891 6.98922 7.18127 7.26141 7.58827 7.67510 7.71981 7.72789 7.84787 8.21198 8.32228 8.68641 8.90376 9.40802 9.81123 10.90297 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015247 B = 0.005259 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.951082 B = 5323.329109 C = 6450.747552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.083 4.083 3 H 0.062 0.938 4 C -0.111 4.111 5 C -0.124 4.124 6 C 0.153 3.847 7 H 0.074 0.926 8 N -0.728 5.728 9 C 0.552 3.448 10 O -0.549 6.549 11 C 0.055 3.945 12 H 0.054 0.946 13 C -0.539 4.539 14 H 0.065 0.935 15 C 0.079 3.921 16 N -0.836 5.836 17 Si 0.878 3.122 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.283 1.283 21 C -0.012 4.012 22 C -0.066 4.066 23 C -0.148 4.148 24 C -0.146 4.146 25 C -0.145 4.145 26 C -0.100 4.100 27 C -0.119 4.119 28 C -0.087 4.087 29 H 0.073 0.927 30 C -0.147 4.147 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.076 0.924 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.393 0.607 39 H 0.263 0.737 40 H 0.127 0.873 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.106 0.894 45 H 0.063 0.937 46 H 0.066 0.934 47 H 0.055 0.945 48 H 0.051 0.949 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.064 5.608 7.728 9.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.102 4.102 3 H 0.080 0.920 4 C -0.148 4.148 5 C -0.163 4.163 6 C 0.048 3.952 7 H 0.092 0.908 8 N -0.381 5.381 9 C 0.341 3.659 10 O -0.426 6.426 11 C 0.034 3.966 12 H 0.072 0.928 13 C -0.577 4.577 14 H 0.083 0.917 15 C -0.129 4.129 16 N -0.469 5.469 17 Si 0.705 3.295 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.209 1.209 21 C -0.013 4.013 22 C -0.083 4.083 23 C -0.166 4.166 24 C -0.164 4.164 25 C -0.163 4.163 26 C -0.118 4.118 27 C -0.156 4.156 28 C -0.106 4.106 29 H 0.092 0.908 30 C -0.204 4.204 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.227 0.773 39 H 0.073 0.927 40 H 0.145 0.855 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.124 0.876 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.074 0.926 48 H 0.070 0.930 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.250 5.908 7.092 9.315 hybrid contribution -1.353 0.169 -0.705 1.535 sum -2.603 6.077 6.388 9.193 Atomic orbital electron populations 1.21893 0.95865 1.01929 1.00935 1.21147 0.94965 0.99000 0.95064 0.91961 1.21513 0.95837 1.01541 0.95926 1.21833 0.95611 0.99037 0.99806 1.20609 0.98495 0.82720 0.93411 0.90763 1.45896 1.29720 1.06965 1.55522 1.20928 0.81625 0.88018 0.75347 1.90526 1.26423 1.83259 1.42411 1.17892 0.95122 0.88312 0.95304 0.92836 1.20691 0.92413 1.42986 1.01580 0.91693 1.24984 0.96252 0.94774 0.96922 1.70082 1.29407 1.36204 1.11189 0.86747 0.85309 0.77968 0.79451 1.19582 1.20821 1.20948 1.19818 0.92415 0.93615 0.95418 1.21135 1.00116 0.93636 0.93454 1.20980 0.93649 1.01210 1.00786 1.20759 0.95159 1.00603 0.99880 1.20816 0.98244 0.98565 0.98662 1.20966 0.93760 0.97201 0.99896 1.21850 0.95407 1.00470 0.97922 1.21134 0.95187 0.99976 0.94305 0.90820 1.21883 1.00963 1.00137 0.97424 0.92529 0.92857 0.93227 0.93205 0.90571 0.93080 0.90682 0.77271 0.92708 0.85525 0.88148 0.88307 0.88199 0.87551 0.91805 0.91484 0.92572 0.92979 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 8.84 37.16 0.33 -1.48 16 2 C -0.08 -1.09 2.25 -90.62 -0.20 -1.29 16 3 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 4 C -0.11 -1.81 5.05 -26.73 -0.13 -1.95 16 5 C -0.12 -2.16 5.60 -26.73 -0.15 -2.31 16 6 C 0.15 2.58 2.78 -67.93 -0.19 2.39 16 7 H 0.07 1.38 7.58 -51.93 -0.39 0.98 16 8 N -0.73 -13.83 4.13 -53.80 -0.22 -14.06 16 9 C 0.55 12.64 5.42 -10.98 -0.06 12.58 16 10 O -0.55 -14.29 13.62 5.56 0.08 -14.22 16 11 C 0.05 1.27 2.77 -94.08 -0.26 1.01 16 12 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 13 C -0.54 -12.87 7.11 -34.44 -0.24 -13.11 16 14 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 15 C 0.08 1.94 4.01 -17.82 -0.07 1.87 16 16 N -0.84 -22.19 10.90 55.43 0.60 -21.59 16 17 Si 0.88 19.58 29.54 -169.99 -5.02 14.56 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 21 C -0.01 -0.28 4.51 -104.63 -0.47 -0.75 16 22 C -0.07 -1.53 8.21 -39.58 -0.32 -1.86 16 23 C -0.15 -3.13 10.05 -39.58 -0.40 -3.53 16 24 C -0.15 -2.92 10.05 -39.58 -0.40 -3.32 16 25 C -0.14 -3.00 10.05 -39.58 -0.40 -3.40 16 26 C -0.10 -2.28 8.21 -39.59 -0.33 -2.60 16 27 C -0.12 -1.54 4.89 -26.75 -0.13 -1.67 16 28 C -0.09 -1.08 2.07 -90.64 -0.19 -1.27 16 29 H 0.07 1.00 6.50 -51.93 -0.34 0.66 16 30 C -0.15 -1.50 8.84 37.16 0.33 -1.17 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.56 6.43 -51.93 -0.33 0.22 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.47 7.60 -51.93 -0.39 1.07 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 38 H 0.39 6.99 6.75 -40.82 -0.28 6.71 16 39 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 40 H 0.13 3.06 6.04 -52.48 -0.32 2.74 16 41 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 42 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 43 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 44 H 0.11 2.40 7.01 -52.49 -0.37 2.03 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.06 0.55 6.43 -51.93 -0.33 0.21 16 48 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 374.42 15.07 5.64 5.64 Total: -1.00 -27.82 374.42 -10.43 -38.25 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -8.22 Total: 13.25 kcal Atomic # 6 Polarization: -18.56 SS G_CDS: -3.29 Total: -21.85 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.38 Total: -35.64 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.08 Total: -14.22 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.56 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -27.82 -10.43 -38.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267935827.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.311 kcal (2) G-P(sol) polarization free energy of solvation -27.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds