Wall clock time and date at job start Tue Mar 31 2020 10:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47309 * 2 1 4 4 C 1.53007 * 109.47019 * 240.00161 * 2 1 3 5 5 C 1.52995 * 109.47032 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47527 * 60.00127 * 5 4 2 7 7 H 1.09000 * 109.47721 * 180.02562 * 6 5 4 8 8 N 1.46500 * 109.46900 * 59.99478 * 6 5 4 9 9 C 1.34783 * 119.99534 * 85.00572 * 8 6 5 10 10 O 1.21280 * 119.99800 * 359.97438 * 9 8 6 11 11 C 1.50700 * 119.99956 * 179.97438 * 9 8 6 12 12 H 1.08997 * 109.46918 * 300.00326 * 11 9 8 13 13 C 1.50701 * 109.46897 * 59.99768 * 11 9 8 14 14 H 1.08004 * 119.99949 * 235.35520 * 13 11 9 15 15 C 1.37875 * 119.99830 * 55.36059 * 13 11 9 16 16 N 1.31514 * 120.00209 * 1.97903 * 15 13 11 17 17 Si 1.86804 * 120.00072 * 181.98370 * 15 13 11 18 18 H 1.48503 * 109.46713 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47250 * 119.99647 * 17 15 13 20 20 H 1.48502 * 109.47175 * 239.99945 * 17 15 13 21 21 C 1.50697 * 109.47230 * 180.02562 * 11 9 8 22 22 C 1.38236 * 119.99897 * 226.92347 * 21 11 9 23 23 C 1.38231 * 120.00048 * 179.74254 * 22 21 11 24 24 C 1.38236 * 119.99688 * 0.55002 * 23 22 21 25 25 C 1.38239 * 120.00159 * 359.70417 * 24 23 22 26 26 C 1.38227 * 119.99871 * 47.19635 * 21 11 9 27 27 C 1.53007 * 109.46861 * 299.99978 * 6 5 4 28 28 C 1.52998 * 109.47105 * 120.00383 * 2 1 3 29 29 H 1.09000 * 109.47350 * 59.99642 * 28 2 1 30 30 C 1.53001 * 109.47263 * 299.99953 * 28 2 1 31 31 H 1.08995 * 109.46856 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.46851 * 299.99577 * 1 2 3 33 33 H 1.08996 * 109.47206 * 59.99889 * 1 2 3 34 34 H 1.09001 * 109.46762 * 60.00161 * 4 2 1 35 35 H 1.09000 * 109.46949 * 300.00059 * 4 2 1 36 36 H 1.09000 * 109.47238 * 299.99804 * 5 4 2 37 37 H 1.08997 * 109.47357 * 180.02562 * 5 4 2 38 38 H 0.97001 * 120.00147 * 265.00402 * 8 6 5 39 39 H 0.97004 * 120.00234 * 180.02562 * 16 15 13 40 40 H 1.08006 * 119.99833 * 0.02562 * 22 21 11 41 41 H 1.07996 * 120.00265 * 180.27277 * 23 22 21 42 42 H 1.08000 * 119.99804 * 179.72550 * 24 23 22 43 43 H 1.07997 * 119.99834 * 179.97438 * 25 24 23 44 44 H 1.08000 * 120.00583 * 359.97438 * 26 21 11 45 45 H 1.09001 * 109.46762 * 179.97438 * 27 6 5 46 46 H 1.08995 * 109.47206 * 300.00135 * 27 6 5 47 47 H 1.09000 * 109.46893 * 59.99767 * 30 28 2 48 48 H 1.08996 * 109.47434 * 180.02562 * 30 28 2 49 49 H 1.09000 * 109.46683 * 300.00097 * 30 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2490 6 6 4.0796 -1.4435 0.0002 7 1 5.1696 -1.4435 0.0007 8 7 3.5906 -2.8245 -0.0002 9 6 4.2673 -3.7787 -0.6697 10 8 5.2806 -3.4938 -1.2722 11 6 3.7648 -5.1994 -0.6697 12 1 3.7281 -5.5717 0.3541 13 6 2.3832 -5.2435 -1.2700 14 1 1.5659 -5.6771 -0.7127 15 6 2.1626 -4.7305 -2.5306 16 7 3.1651 -4.2380 -3.2248 17 14 0.4397 -4.7349 -3.2524 18 1 -0.5036 -5.3400 -2.2781 19 1 0.0222 -3.3402 -3.5455 20 1 0.4309 -5.5284 -4.5076 21 6 4.6947 -6.0612 -1.4841 22 6 4.1810 -6.9416 -2.4179 23 6 5.0343 -7.7284 -3.1688 24 6 6.4007 -7.6429 -2.9779 25 6 6.9142 -6.7663 -2.0404 26 6 6.0611 -5.9755 -1.2935 27 6 3.5696 -0.7222 1.2495 28 6 2.0400 -0.7213 1.2492 29 1 1.6767 -1.7490 1.2492 30 6 1.5301 -0.0002 2.4985 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 1.6767 -0.2073 -2.1392 35 1 1.6767 -1.7489 -1.2493 36 1 3.9337 0.3057 -1.2488 37 1 3.9334 -1.2352 -2.1392 38 1 2.7800 -3.0521 0.4815 39 1 3.0099 -3.8768 -4.1116 40 1 3.1132 -7.0115 -2.5640 41 1 4.6332 -8.4130 -3.9014 42 1 7.0672 -8.2608 -3.5614 43 1 7.9817 -6.6998 -1.8910 44 1 6.4623 -5.2905 -0.5612 45 1 3.9322 -1.2366 2.1394 46 1 3.9332 0.3053 1.2497 47 1 0.4401 -0.0001 2.4984 48 1 1.8937 -0.5138 3.3884 49 1 1.8934 1.0275 2.4985 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267935827.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:03 Heat of formation + Delta-G solvation = -53.207971 kcal Electronic energy + Delta-G solvation = -28169.155825 eV Core-core repulsion = 24673.073407 eV Total energy + Delta-G solvation = -3496.082418 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.12475 -40.00938 -38.65562 -35.45712 -35.17890 -33.07898 -32.62366 -31.80028 -31.33506 -28.98730 -27.93914 -26.34667 -25.65656 -22.99736 -22.72990 -22.62639 -21.56818 -21.13131 -19.76859 -18.62617 -17.56922 -17.02201 -16.72230 -16.53085 -16.09557 -15.63371 -15.37532 -15.35039 -15.15672 -14.91998 -14.52700 -14.18507 -14.14086 -13.92312 -13.74488 -13.55102 -13.15168 -12.98665 -12.84465 -12.83639 -12.64591 -12.60907 -12.51516 -12.34163 -12.27505 -12.16869 -11.76601 -11.75773 -11.40361 -11.27540 -11.13159 -10.89914 -10.76225 -10.61309 -10.06507 -9.49498 -9.35856 -9.07540 -8.03721 -6.22229 0.89492 0.94646 1.36686 1.43676 1.50228 2.36849 2.51004 2.89679 3.23886 3.38140 3.81396 3.83123 3.84445 4.16922 4.30599 4.34827 4.36374 4.45925 4.51456 4.53610 4.58659 4.67769 4.68952 4.73460 4.81223 4.85161 4.92286 4.98908 5.02415 5.05382 5.08109 5.14946 5.15711 5.19001 5.23330 5.27493 5.38899 5.45293 5.47558 5.54202 5.56572 5.59811 5.70115 5.72910 5.90217 5.96012 6.00568 6.15208 6.45301 6.54714 6.79574 7.20145 7.45843 8.05146 8.94459 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015247 B = 0.005259 C = 0.004340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.951082 B = 5323.329109 C = 6450.747552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.076 4.076 3 H 0.080 0.920 4 C -0.104 4.104 5 C -0.118 4.118 6 C 0.151 3.849 7 H 0.054 0.946 8 N -0.717 5.717 9 C 0.551 3.449 10 O -0.586 6.586 11 C 0.045 3.955 12 H 0.063 0.937 13 C -0.532 4.532 14 H 0.067 0.933 15 C 0.050 3.950 16 N -0.864 5.864 17 Si 0.926 3.074 18 H -0.260 1.260 19 H -0.288 1.288 20 H -0.290 1.290 21 C -0.032 4.032 22 C -0.087 4.087 23 C -0.153 4.153 24 C -0.142 4.142 25 C -0.147 4.147 26 C -0.118 4.118 27 C -0.107 4.107 28 C -0.085 4.085 29 H 0.058 0.942 30 C -0.140 4.140 31 H 0.042 0.958 32 H 0.077 0.923 33 H 0.049 0.951 34 H 0.044 0.956 35 H 0.041 0.959 36 H 0.075 0.925 37 H 0.021 0.979 38 H 0.399 0.601 39 H 0.252 0.748 40 H 0.111 0.889 41 H 0.125 0.875 42 H 0.137 0.863 43 H 0.129 0.871 44 H 0.098 0.902 45 H 0.074 0.926 46 H 0.089 0.911 47 H 0.063 0.937 48 H 0.059 0.941 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.546 6.337 9.070 11.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.095 4.095 3 H 0.098 0.902 4 C -0.142 4.142 5 C -0.156 4.156 6 C 0.046 3.954 7 H 0.073 0.927 8 N -0.369 5.369 9 C 0.340 3.660 10 O -0.466 6.466 11 C 0.024 3.976 12 H 0.081 0.919 13 C -0.569 4.569 14 H 0.085 0.915 15 C -0.155 4.155 16 N -0.498 5.498 17 Si 0.753 3.247 18 H -0.184 1.184 19 H -0.214 1.214 20 H -0.216 1.216 21 C -0.033 4.033 22 C -0.105 4.105 23 C -0.171 4.171 24 C -0.160 4.160 25 C -0.165 4.165 26 C -0.136 4.136 27 C -0.145 4.145 28 C -0.104 4.104 29 H 0.077 0.923 30 C -0.198 4.198 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.094 0.906 37 H 0.040 0.960 38 H 0.235 0.765 39 H 0.062 0.938 40 H 0.129 0.871 41 H 0.143 0.857 42 H 0.155 0.845 43 H 0.147 0.853 44 H 0.117 0.883 45 H 0.093 0.907 46 H 0.107 0.893 47 H 0.081 0.919 48 H 0.078 0.922 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.771 6.639 8.474 10.910 hybrid contribution -1.157 -0.096 -1.131 1.621 sum -2.928 6.543 7.343 10.262 Atomic orbital electron populations 1.21878 0.94912 1.01444 1.02170 1.21107 0.95724 0.99304 0.93327 0.90212 1.21433 0.94848 0.99991 0.97955 1.21737 0.96456 0.99685 0.97750 1.20756 0.97475 0.81767 0.95403 0.92737 1.45798 1.29303 1.07514 1.54268 1.20882 0.81365 0.88535 0.75189 1.90492 1.28094 1.83811 1.44190 1.18010 0.94937 0.88821 0.95841 0.91895 1.20830 0.92810 1.41931 1.01371 0.91454 1.25411 0.98347 0.94547 0.97203 1.70240 1.30896 1.37718 1.10911 0.85984 0.82670 0.77341 0.78675 1.18374 1.21416 1.21645 1.19934 0.93091 0.94147 0.96166 1.21113 0.99765 0.94994 0.94674 1.21302 0.94224 1.00943 1.00590 1.21161 0.95189 1.00262 0.99418 1.21188 0.99555 0.97750 0.97970 1.21028 0.93816 0.98000 1.00746 1.21799 0.95917 1.01080 0.95705 1.21113 0.94495 0.99518 0.95280 0.92331 1.21823 1.01401 1.00508 0.96020 0.93889 0.90418 0.93225 0.93751 0.93969 0.90644 0.96005 0.76511 0.93849 0.87126 0.85738 0.84514 0.85344 0.88336 0.90749 0.89262 0.91852 0.92210 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 8.84 71.98 0.64 -2.62 16 2 C -0.08 -1.84 2.25 -10.79 -0.02 -1.87 16 3 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 4 C -0.10 -3.46 5.05 30.59 0.15 -3.31 16 5 C -0.12 -4.20 5.60 30.59 0.17 -4.03 16 6 C 0.15 5.14 2.78 44.99 0.13 5.26 16 7 H 0.05 2.08 7.58 -2.39 -0.02 2.06 16 8 N -0.72 -28.03 4.13 -442.52 -1.83 -29.86 16 9 C 0.55 26.25 5.42 87.66 0.48 26.73 16 10 O -0.59 -31.94 13.62 -3.03 -0.04 -31.98 16 11 C 0.05 2.16 2.77 -13.03 -0.04 2.12 16 12 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 13 C -0.53 -25.98 7.11 25.60 0.18 -25.80 16 14 H 0.07 3.20 7.81 -2.91 -0.02 3.17 16 15 C 0.05 2.53 4.01 84.65 0.34 2.87 16 16 N -0.86 -47.74 10.90 21.45 0.23 -47.51 16 17 Si 0.93 41.12 29.54 68.60 2.03 43.14 16 18 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 19 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 20 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 21 C -0.03 -1.58 4.51 -19.87 -0.09 -1.67 16 22 C -0.09 -4.16 8.21 22.27 0.18 -3.97 16 23 C -0.15 -6.31 10.05 22.27 0.22 -6.09 16 24 C -0.14 -5.42 10.05 22.27 0.22 -5.20 16 25 C -0.15 -5.92 10.05 22.27 0.22 -5.70 16 26 C -0.12 -5.44 8.21 22.27 0.18 -5.26 16 27 C -0.11 -2.56 4.89 30.58 0.15 -2.41 16 28 C -0.09 -1.91 2.07 -10.81 -0.02 -1.93 16 29 H 0.06 1.50 6.50 -2.39 -0.02 1.49 16 30 C -0.14 -2.33 8.84 71.98 0.64 -1.69 16 31 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.08 1.35 6.43 -2.39 -0.02 1.34 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.04 1.67 7.60 -2.39 -0.02 1.65 16 36 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.40 14.46 6.75 -92.71 -0.63 13.84 16 39 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 40 H 0.11 5.50 6.04 -2.91 -0.02 5.48 16 41 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 42 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 43 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 44 H 0.10 4.61 7.01 -2.91 -0.02 4.59 16 45 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.06 0.98 6.43 -2.39 -0.02 0.97 16 48 H 0.06 0.92 8.14 -2.39 -0.02 0.91 16 49 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -62.93 374.42 4.42 -58.51 By element: Atomic # 1 Polarization: 41.97 SS G_CDS: 0.30 Total: 42.26 kcal Atomic # 6 Polarization: -38.29 SS G_CDS: 3.73 Total: -34.56 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -1.59 Total: -77.37 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.04 Total: -31.98 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.14 kcal Total: -62.93 4.42 -58.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267935827.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.298 kcal (2) G-P(sol) polarization free energy of solvation -62.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds