Wall clock time and date at job start Tue Mar 31 2020 10:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46941 * 2 1 4 4 C 1.52996 * 109.47693 * 240.00127 * 2 1 3 5 5 C 1.53006 * 109.46766 * 299.99744 * 4 2 1 6 6 C 1.52992 * 109.47353 * 299.99974 * 5 4 2 7 7 H 1.08997 * 109.47190 * 300.00339 * 6 5 4 8 8 N 1.46496 * 109.47383 * 179.97438 * 6 5 4 9 9 C 1.34783 * 120.00041 * 85.00000 * 8 6 5 10 10 O 1.21280 * 119.99494 * 359.97438 * 9 8 6 11 11 C 1.50693 * 119.99880 * 180.02562 * 9 8 6 12 12 H 1.09005 * 109.47417 * 60.00076 * 11 9 8 13 13 C 1.50698 * 109.47458 * 299.99926 * 11 9 8 14 14 H 1.07998 * 119.99902 * 324.87941 * 13 11 9 15 15 C 1.37870 * 120.00251 * 144.88266 * 13 11 9 16 16 N 1.31517 * 120.00023 * 5.19493 * 15 13 11 17 17 Si 1.86803 * 120.00251 * 185.19337 * 15 13 11 18 18 H 1.48508 * 109.46958 * 60.00096 * 17 15 13 19 19 H 1.48497 * 109.47179 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47339 * 300.00131 * 17 15 13 21 21 C 1.50699 * 109.47008 * 179.97438 * 11 9 8 22 22 C 1.38237 * 119.99754 * 66.01551 * 21 11 9 23 23 C 1.38241 * 120.00170 * 179.78975 * 22 21 11 24 24 C 1.38238 * 119.99533 * 0.45795 * 23 22 21 25 25 C 1.38239 * 120.00175 * 359.77406 * 24 23 22 26 26 C 1.38234 * 120.00274 * 246.28439 * 21 11 9 27 27 C 1.53003 * 109.47082 * 59.99636 * 6 5 4 28 28 C 1.52998 * 109.47421 * 300.00183 * 27 6 5 29 29 H 1.08998 * 109.47112 * 300.00100 * 28 27 6 30 30 C 1.52996 * 109.46864 * 179.97438 * 28 27 6 31 31 H 1.09002 * 109.46447 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47399 * 300.00176 * 1 2 3 33 33 H 1.09004 * 109.46893 * 60.00447 * 1 2 3 34 34 H 1.08998 * 109.47549 * 180.02562 * 4 2 1 35 35 H 1.08996 * 109.47586 * 59.99470 * 4 2 1 36 36 H 1.09008 * 109.47005 * 59.99787 * 5 4 2 37 37 H 1.09000 * 109.47234 * 179.97438 * 5 4 2 38 38 H 0.97003 * 120.00300 * 265.00053 * 8 6 5 39 39 H 0.97002 * 120.00234 * 180.02562 * 16 15 13 40 40 H 1.08001 * 120.00061 * 359.97438 * 22 21 11 41 41 H 1.07993 * 120.00230 * 180.25187 * 23 22 21 42 42 H 1.07996 * 119.99736 * 179.79069 * 24 23 22 43 43 H 1.07993 * 119.99633 * 180.02562 * 25 24 23 44 44 H 1.07993 * 119.99992 * 359.97438 * 26 21 11 45 45 H 1.08999 * 109.46904 * 179.97438 * 27 6 5 46 46 H 1.09008 * 109.47057 * 60.00322 * 27 6 5 47 47 H 1.08998 * 109.47549 * 299.99525 * 30 28 27 48 48 H 1.08996 * 109.47586 * 60.00473 * 30 28 27 49 49 H 1.09005 * 109.46824 * 179.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5302 -2.1638 -1.2491 6 6 2.0401 -2.8849 0.0001 7 1 3.1301 -2.8849 0.0002 8 7 1.5514 -4.2660 0.0004 9 6 2.2278 -5.2204 -0.6690 10 8 3.2408 -4.9357 -1.2720 11 6 1.7247 -6.6409 -0.6691 12 1 0.7255 -6.6725 -1.1036 13 6 1.6735 -7.1558 0.7462 14 1 2.4222 -6.8468 1.4607 15 6 0.6710 -8.0214 1.1291 16 7 -0.1799 -8.4781 0.2364 17 14 0.5214 -8.5457 2.9158 18 1 0.3054 -7.3478 3.7667 19 1 -0.6294 -9.4722 3.0651 20 1 1.7688 -9.2331 3.3362 21 6 2.6539 -7.5028 -1.4844 22 6 3.9501 -7.7195 -1.0556 23 6 4.8011 -8.5137 -1.8013 24 6 4.3589 -9.0834 -2.9806 25 6 3.0641 -8.8627 -3.4119 26 6 2.2118 -8.0721 -2.6640 27 6 1.5301 -2.1636 1.2493 28 6 2.0400 -0.7211 1.2493 29 1 3.1300 -0.7211 1.2493 30 6 1.5294 0.0002 2.4982 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 3.1301 -0.7216 -1.2489 35 1 1.6768 -0.2075 -2.1392 36 1 0.4401 -2.1638 -1.2492 37 1 1.8932 -2.6775 -2.1393 38 1 0.7409 -4.4936 0.4824 39 1 -0.8855 -9.0868 0.5057 40 1 4.2969 -7.2708 -0.1365 41 1 5.8125 -8.6863 -1.4642 42 1 5.0248 -9.7011 -3.5649 43 1 2.7186 -9.3082 -4.3330 44 1 1.2004 -7.8996 -3.0010 45 1 1.8930 -2.6777 2.1393 46 1 0.4400 -2.1637 1.2493 47 1 0.4395 0.0003 2.4977 48 1 1.8924 -0.5134 3.3884 49 1 1.8931 1.0278 2.4984 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267935830.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:13 Heat of formation + Delta-G solvation = -49.216818 kcal Electronic energy + Delta-G solvation = -27047.027262 eV Core-core repulsion = 23551.117914 eV Total energy + Delta-G solvation = -3495.909348 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.87467 -38.72531 -37.49714 -34.09711 -33.61677 -32.21471 -31.08612 -30.10550 -29.89664 -27.63527 -27.00735 -25.53812 -23.90598 -22.11991 -21.61386 -21.50443 -20.33299 -19.31216 -18.28521 -16.73036 -16.17611 -15.79629 -15.68996 -15.23972 -15.02102 -14.51195 -14.23835 -14.00933 -13.75740 -13.71951 -13.09933 -12.85167 -12.77507 -12.59055 -12.41668 -12.26075 -11.99239 -11.98124 -11.78213 -11.62124 -11.59201 -11.27054 -11.02787 -11.00249 -10.97267 -10.63952 -10.39811 -10.31498 -10.22398 -10.13159 -9.99088 -9.93443 -9.40681 -8.74833 -8.54958 -8.24479 -7.90434 -7.56050 -6.25833 -4.32143 2.41898 2.44800 3.20747 3.26530 3.28311 3.77057 4.03574 4.29184 4.68411 4.71920 4.81869 4.91129 5.10842 5.15871 5.17483 5.37545 5.40563 5.48906 5.59511 5.62801 5.64743 5.75438 5.76724 5.82728 5.84849 5.92463 5.93459 5.95204 6.01642 6.04074 6.15292 6.23709 6.28308 6.31713 6.34677 6.45848 6.51821 6.55546 6.63140 6.67988 6.89520 7.01746 7.19841 7.34120 7.40705 7.49114 7.64202 7.79330 7.99614 8.11074 8.46649 8.72071 9.30021 9.35480 10.82390 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011961 B = 0.004336 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.317687 B = 6455.509186 C = 7970.096387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.086 4.086 3 H 0.066 0.934 4 C -0.111 4.111 5 C -0.130 4.130 6 C 0.148 3.852 7 H 0.079 0.921 8 N -0.727 5.727 9 C 0.528 3.472 10 O -0.568 6.568 11 C 0.050 3.950 12 H 0.087 0.913 13 C -0.514 4.514 14 H 0.061 0.939 15 C 0.074 3.926 16 N -0.878 5.878 17 Si 0.897 3.103 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.275 1.275 21 C -0.007 4.007 22 C -0.085 4.085 23 C -0.135 4.135 24 C -0.150 4.150 25 C -0.132 4.132 26 C -0.118 4.118 27 C -0.123 4.123 28 C -0.083 4.083 29 H 0.070 0.930 30 C -0.148 4.148 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.403 0.597 39 H 0.267 0.733 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.111 0.889 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.053 0.947 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.654 12.697 0.095 12.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.105 4.105 3 H 0.084 0.916 4 C -0.149 4.149 5 C -0.169 4.169 6 C 0.043 3.957 7 H 0.097 0.903 8 N -0.378 5.378 9 C 0.318 3.682 10 O -0.447 6.447 11 C 0.029 3.971 12 H 0.105 0.895 13 C -0.551 4.551 14 H 0.080 0.920 15 C -0.131 4.131 16 N -0.514 5.514 17 Si 0.724 3.276 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.200 1.200 21 C -0.008 4.008 22 C -0.103 4.103 23 C -0.153 4.153 24 C -0.168 4.168 25 C -0.150 4.150 26 C -0.137 4.137 27 C -0.161 4.161 28 C -0.102 4.102 29 H 0.088 0.912 30 C -0.205 4.205 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.238 0.762 39 H 0.077 0.923 40 H 0.128 0.872 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.124 0.876 44 H 0.129 0.871 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.077 0.923 48 H 0.072 0.928 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.200 12.758 -0.357 12.820 hybrid contribution -0.531 -0.629 1.198 1.454 sum 0.668 12.129 0.841 12.177 Atomic orbital electron populations 1.21999 0.95452 1.02407 1.01152 1.21131 0.95959 0.98714 0.94658 0.91603 1.21519 1.00651 0.95559 0.97163 1.21966 1.00890 0.94971 0.99055 1.20751 0.99499 0.81725 0.93726 0.90322 1.45992 1.30039 1.07101 1.54620 1.21607 0.82663 0.88209 0.75739 1.90571 1.25863 1.83601 1.44687 1.18114 0.96259 0.85662 0.97069 0.89490 1.20640 1.12363 1.29112 0.93013 0.92045 1.24967 0.95245 0.95151 0.97756 1.69912 1.16804 1.31158 1.33482 0.86563 0.77859 0.78648 0.84495 1.19948 1.21132 1.20006 1.20021 0.93590 0.95322 0.91875 1.20810 0.93619 0.97077 0.98808 1.20947 0.99001 0.99409 0.95947 1.20785 0.96149 1.02328 0.97537 1.20894 0.94316 1.00196 0.99631 1.20978 0.98992 0.98692 0.95001 1.21895 1.01383 0.94865 0.97915 1.21072 1.00232 0.94384 0.94502 0.91182 1.21876 1.01432 0.99857 0.97342 0.91752 0.92710 0.93142 0.91986 0.92144 0.91768 0.91596 0.76233 0.92335 0.87221 0.87667 0.87774 0.87621 0.87092 0.91360 0.91232 0.92341 0.92766 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 8.15 37.16 0.30 -1.15 16 2 C -0.09 -0.86 2.72 -90.62 -0.25 -1.11 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.11 -1.27 5.45 -26.73 -0.15 -1.41 16 5 C -0.13 -1.83 5.22 -26.73 -0.14 -1.97 16 6 C 0.15 2.28 2.45 -67.93 -0.17 2.11 16 7 H 0.08 1.37 7.58 -51.93 -0.39 0.98 16 8 N -0.73 -13.29 4.98 -53.81 -0.27 -13.56 16 9 C 0.53 11.69 7.01 -10.99 -0.08 11.62 16 10 O -0.57 -13.79 15.08 5.56 0.08 -13.71 16 11 C 0.05 1.19 2.37 -94.08 -0.22 0.97 16 12 H 0.09 2.19 7.13 -51.93 -0.37 1.82 16 13 C -0.51 -12.83 7.47 -34.44 -0.26 -13.08 16 14 H 0.06 1.56 7.82 -52.49 -0.41 1.15 16 15 C 0.07 1.86 5.45 -17.82 -0.10 1.77 16 16 N -0.88 -23.18 12.84 55.43 0.71 -22.47 16 17 Si 0.90 19.88 29.54 -169.99 -5.02 14.86 16 18 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 19 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 C -0.01 -0.17 4.30 -104.62 -0.45 -0.62 16 22 C -0.08 -1.95 8.31 -39.58 -0.33 -2.28 16 23 C -0.13 -2.73 10.05 -39.58 -0.40 -3.13 16 24 C -0.15 -2.86 10.05 -39.58 -0.40 -3.25 16 25 C -0.13 -2.62 10.05 -39.58 -0.40 -3.01 16 26 C -0.12 -2.64 9.67 -39.58 -0.38 -3.02 16 27 C -0.12 -1.53 4.40 -26.73 -0.12 -1.64 16 28 C -0.08 -0.87 2.50 -90.62 -0.23 -1.10 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 C -0.15 -1.34 8.84 37.16 0.33 -1.01 16 31 H 0.06 0.67 4.81 -51.93 -0.25 0.42 16 32 H 0.05 0.47 6.43 -51.93 -0.33 0.14 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.86 6.43 -51.92 -0.33 0.53 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.40 7.10 8.49 -40.82 -0.35 6.75 16 39 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 40 H 0.11 2.55 7.90 -52.49 -0.41 2.13 16 41 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 42 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 44 H 0.11 2.39 7.96 -52.49 -0.42 1.97 16 45 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.07 0.82 6.43 -51.92 -0.33 0.49 16 47 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 48 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 381.34 15.07 5.75 5.75 Total: -1.00 -28.13 381.34 -10.31 -38.44 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -8.15 Total: 12.02 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -3.42 Total: -21.33 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.44 Total: -36.03 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.08 Total: -13.71 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.13 -10.31 -38.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267935830.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.776 kcal (2) G-P(sol) polarization free energy of solvation -28.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds