Wall clock time and date at job start Tue Mar 31 2020 10:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46941 * 2 1 4 4 C 1.52996 * 109.47693 * 240.00127 * 2 1 3 5 5 C 1.53006 * 109.46766 * 299.99744 * 4 2 1 6 6 C 1.52992 * 109.47353 * 299.99974 * 5 4 2 7 7 H 1.08997 * 109.47190 * 300.00339 * 6 5 4 8 8 N 1.46496 * 109.47383 * 179.97438 * 6 5 4 9 9 C 1.34783 * 120.00041 * 85.00000 * 8 6 5 10 10 O 1.21280 * 119.99494 * 359.97438 * 9 8 6 11 11 C 1.50693 * 119.99880 * 180.02562 * 9 8 6 12 12 H 1.09005 * 109.47417 * 60.00076 * 11 9 8 13 13 C 1.50698 * 109.47458 * 299.99926 * 11 9 8 14 14 H 1.07998 * 119.99902 * 324.87941 * 13 11 9 15 15 C 1.37870 * 120.00251 * 144.88266 * 13 11 9 16 16 N 1.31517 * 120.00023 * 5.19493 * 15 13 11 17 17 Si 1.86803 * 120.00251 * 185.19337 * 15 13 11 18 18 H 1.48508 * 109.46958 * 60.00096 * 17 15 13 19 19 H 1.48497 * 109.47179 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47339 * 300.00131 * 17 15 13 21 21 C 1.50699 * 109.47008 * 179.97438 * 11 9 8 22 22 C 1.38237 * 119.99754 * 66.01551 * 21 11 9 23 23 C 1.38241 * 120.00170 * 179.78975 * 22 21 11 24 24 C 1.38238 * 119.99533 * 0.45795 * 23 22 21 25 25 C 1.38239 * 120.00175 * 359.77406 * 24 23 22 26 26 C 1.38234 * 120.00274 * 246.28439 * 21 11 9 27 27 C 1.53003 * 109.47082 * 59.99636 * 6 5 4 28 28 C 1.52998 * 109.47421 * 300.00183 * 27 6 5 29 29 H 1.08998 * 109.47112 * 300.00100 * 28 27 6 30 30 C 1.52996 * 109.46864 * 179.97438 * 28 27 6 31 31 H 1.09002 * 109.46447 * 179.97438 * 1 2 3 32 32 H 1.08991 * 109.47399 * 300.00176 * 1 2 3 33 33 H 1.09004 * 109.46893 * 60.00447 * 1 2 3 34 34 H 1.08998 * 109.47549 * 180.02562 * 4 2 1 35 35 H 1.08996 * 109.47586 * 59.99470 * 4 2 1 36 36 H 1.09008 * 109.47005 * 59.99787 * 5 4 2 37 37 H 1.09000 * 109.47234 * 179.97438 * 5 4 2 38 38 H 0.97003 * 120.00300 * 265.00053 * 8 6 5 39 39 H 0.97002 * 120.00234 * 180.02562 * 16 15 13 40 40 H 1.08001 * 120.00061 * 359.97438 * 22 21 11 41 41 H 1.07993 * 120.00230 * 180.25187 * 23 22 21 42 42 H 1.07996 * 119.99736 * 179.79069 * 24 23 22 43 43 H 1.07993 * 119.99633 * 180.02562 * 25 24 23 44 44 H 1.07993 * 119.99992 * 359.97438 * 26 21 11 45 45 H 1.08999 * 109.46904 * 179.97438 * 27 6 5 46 46 H 1.09008 * 109.47057 * 60.00322 * 27 6 5 47 47 H 1.08998 * 109.47549 * 299.99525 * 30 28 27 48 48 H 1.08996 * 109.47586 * 60.00473 * 30 28 27 49 49 H 1.09005 * 109.46824 * 179.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.5302 -2.1638 -1.2491 6 6 2.0401 -2.8849 0.0001 7 1 3.1301 -2.8849 0.0002 8 7 1.5514 -4.2660 0.0004 9 6 2.2278 -5.2204 -0.6690 10 8 3.2408 -4.9357 -1.2720 11 6 1.7247 -6.6409 -0.6691 12 1 0.7255 -6.6725 -1.1036 13 6 1.6735 -7.1558 0.7462 14 1 2.4222 -6.8468 1.4607 15 6 0.6710 -8.0214 1.1291 16 7 -0.1799 -8.4781 0.2364 17 14 0.5214 -8.5457 2.9158 18 1 0.3054 -7.3478 3.7667 19 1 -0.6294 -9.4722 3.0651 20 1 1.7688 -9.2331 3.3362 21 6 2.6539 -7.5028 -1.4844 22 6 3.9501 -7.7195 -1.0556 23 6 4.8011 -8.5137 -1.8013 24 6 4.3589 -9.0834 -2.9806 25 6 3.0641 -8.8627 -3.4119 26 6 2.2118 -8.0721 -2.6640 27 6 1.5301 -2.1636 1.2493 28 6 2.0400 -0.7211 1.2493 29 1 3.1300 -0.7211 1.2493 30 6 1.5294 0.0002 2.4982 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 3.1301 -0.7216 -1.2489 35 1 1.6768 -0.2075 -2.1392 36 1 0.4401 -2.1638 -1.2492 37 1 1.8932 -2.6775 -2.1393 38 1 0.7409 -4.4936 0.4824 39 1 -0.8855 -9.0868 0.5057 40 1 4.2969 -7.2708 -0.1365 41 1 5.8125 -8.6863 -1.4642 42 1 5.0248 -9.7011 -3.5649 43 1 2.7186 -9.3082 -4.3330 44 1 1.2004 -7.8996 -3.0010 45 1 1.8930 -2.6777 2.1393 46 1 0.4400 -2.1637 1.2493 47 1 0.4395 0.0003 2.4977 48 1 1.8924 -0.5134 3.3884 49 1 1.8931 1.0278 2.4984 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267935830.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:11 Heat of formation + Delta-G solvation = -62.421493 kcal Electronic energy + Delta-G solvation = -27047.599860 eV Core-core repulsion = 23551.117914 eV Total energy + Delta-G solvation = -3496.481946 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.22344 -40.18059 -39.07882 -35.53880 -35.48171 -33.20496 -32.88135 -31.54383 -31.36064 -29.07134 -28.20892 -26.49706 -25.74176 -23.36146 -23.17441 -22.78868 -21.77226 -20.93572 -19.34963 -18.60941 -17.73967 -17.54150 -16.94663 -16.50366 -16.28977 -15.91710 -15.88481 -15.53448 -15.25746 -14.84703 -14.54589 -14.29232 -14.05570 -14.00896 -13.75111 -13.46021 -13.42660 -13.29875 -13.08530 -12.86278 -12.76348 -12.74252 -12.72332 -12.29872 -12.18614 -11.97029 -11.94872 -11.70870 -11.57633 -11.28858 -11.21189 -11.11170 -10.99359 -10.67642 -10.35365 -9.80129 -9.56553 -9.25658 -8.20997 -6.33049 0.74847 0.80236 1.43221 1.44166 1.51621 1.98295 2.42597 2.54937 3.07805 3.26568 3.71410 3.76970 3.92336 4.13379 4.21332 4.22518 4.29167 4.32547 4.40335 4.41434 4.51261 4.53726 4.60714 4.65827 4.71538 4.76535 4.82460 4.86945 4.96777 4.99424 5.06597 5.07584 5.10215 5.16627 5.18374 5.20430 5.31902 5.35721 5.40301 5.44464 5.48406 5.51975 5.64154 5.69372 5.77267 5.78602 5.84618 5.95524 6.23628 6.40187 6.71425 6.83398 7.34104 7.59354 8.86851 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011961 B = 0.004336 C = 0.003512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2340.317687 B = 6455.509186 C = 7970.096387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.081 4.081 3 H 0.085 0.915 4 C -0.107 4.107 5 C -0.123 4.123 6 C 0.147 3.853 7 H 0.054 0.946 8 N -0.716 5.716 9 C 0.527 3.473 10 O -0.594 6.594 11 C 0.052 3.948 12 H 0.064 0.936 13 C -0.516 4.516 14 H 0.051 0.949 15 C 0.034 3.966 16 N -0.905 5.905 17 Si 0.954 3.046 18 H -0.262 1.262 19 H -0.283 1.283 20 H -0.279 1.279 21 C -0.036 4.036 22 C -0.111 4.111 23 C -0.136 4.136 24 C -0.144 4.144 25 C -0.129 4.129 26 C -0.143 4.143 27 C -0.115 4.115 28 C -0.081 4.081 29 H 0.064 0.936 30 C -0.144 4.144 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.033 0.967 38 H 0.406 0.594 39 H 0.267 0.733 40 H 0.093 0.907 41 H 0.135 0.865 42 H 0.148 0.852 43 H 0.140 0.860 44 H 0.106 0.894 45 H 0.060 0.940 46 H 0.079 0.921 47 H 0.064 0.936 48 H 0.051 0.949 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.860 13.517 0.418 13.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.099 4.099 3 H 0.103 0.897 4 C -0.145 4.145 5 C -0.162 4.162 6 C 0.042 3.958 7 H 0.072 0.928 8 N -0.366 5.366 9 C 0.316 3.684 10 O -0.476 6.476 11 C 0.031 3.969 12 H 0.082 0.918 13 C -0.554 4.554 14 H 0.069 0.931 15 C -0.168 4.168 16 N -0.542 5.542 17 Si 0.779 3.221 18 H -0.186 1.186 19 H -0.208 1.208 20 H -0.205 1.205 21 C -0.037 4.037 22 C -0.130 4.130 23 C -0.153 4.153 24 C -0.162 4.162 25 C -0.147 4.147 26 C -0.162 4.162 27 C -0.153 4.153 28 C -0.100 4.100 29 H 0.083 0.917 30 C -0.201 4.201 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.052 0.948 38 H 0.242 0.758 39 H 0.076 0.924 40 H 0.111 0.889 41 H 0.153 0.847 42 H 0.165 0.835 43 H 0.158 0.842 44 H 0.124 0.876 45 H 0.079 0.921 46 H 0.098 0.902 47 H 0.083 0.917 48 H 0.070 0.930 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.391 13.612 -0.016 13.683 hybrid contribution -0.543 -0.897 1.018 1.462 sum 0.848 12.715 1.002 12.783 Atomic orbital electron populations 1.21990 0.94778 1.01901 1.02243 1.21118 0.96432 0.99239 0.93129 0.89672 1.21509 1.00299 0.93761 0.98915 1.21881 1.01239 0.96390 0.96702 1.20941 0.98166 0.80389 0.96262 0.92762 1.45969 1.29476 1.07961 1.53197 1.21379 0.82573 0.88389 0.76067 1.90536 1.27032 1.83950 1.46086 1.18004 0.95327 0.86931 0.96622 0.91783 1.20691 1.12097 1.29165 0.93424 0.93064 1.25604 0.94921 0.95110 1.01161 1.70019 1.17350 1.31806 1.35026 0.85669 0.77410 0.78574 0.80411 1.18617 1.20830 1.20503 1.20129 0.94240 0.96279 0.93009 1.20833 0.94088 0.98854 0.99198 1.21326 0.99910 0.98136 0.95976 1.21270 0.96319 1.01571 0.97025 1.21306 0.94329 0.98843 1.00247 1.21132 0.99548 1.00066 0.95406 1.21858 1.01885 0.95907 0.95630 1.21070 0.99961 0.93011 0.95918 0.91731 1.21840 1.01785 1.00354 0.96098 0.93009 0.91356 0.92401 0.92592 0.90785 0.90963 0.94776 0.75835 0.92365 0.88896 0.84687 0.83471 0.84214 0.87627 0.92097 0.90227 0.91726 0.92972 0.91465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 8.15 71.98 0.59 -1.94 16 2 C -0.08 -1.44 2.72 -10.79 -0.03 -1.47 16 3 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 4 C -0.11 -2.36 5.45 30.60 0.17 -2.19 16 5 C -0.12 -3.55 5.22 30.59 0.16 -3.39 16 6 C 0.15 4.67 2.45 44.99 0.11 4.78 16 7 H 0.05 2.00 7.58 -2.39 -0.02 1.98 16 8 N -0.72 -27.54 4.98 -442.55 -2.20 -29.75 16 9 C 0.53 24.70 7.01 87.65 0.61 25.32 16 10 O -0.59 -30.51 15.08 -3.03 -0.05 -30.56 16 11 C 0.05 2.63 2.37 -13.04 -0.03 2.60 16 12 H 0.06 3.45 7.13 -2.38 -0.02 3.44 16 13 C -0.52 -26.78 7.47 25.60 0.19 -26.59 16 14 H 0.05 2.70 7.82 -2.91 -0.02 2.68 16 15 C 0.03 1.76 5.45 84.65 0.46 2.22 16 16 N -0.91 -49.06 12.84 21.45 0.28 -48.78 16 17 Si 0.95 41.15 29.54 68.60 2.03 43.17 16 18 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 19 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 21 C -0.04 -1.76 4.30 -19.87 -0.09 -1.85 16 22 C -0.11 -5.25 8.31 22.27 0.18 -5.07 16 23 C -0.14 -5.33 10.05 22.27 0.22 -5.10 16 24 C -0.14 -5.11 10.05 22.27 0.22 -4.89 16 25 C -0.13 -4.92 10.05 22.27 0.22 -4.70 16 26 C -0.14 -6.54 9.67 22.27 0.22 -6.32 16 27 C -0.11 -2.82 4.40 30.59 0.13 -2.68 16 28 C -0.08 -1.57 2.50 -10.80 -0.03 -1.60 16 29 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 30 C -0.14 -2.25 8.84 71.98 0.64 -1.62 16 31 H 0.05 0.99 4.81 -2.39 -0.01 0.98 16 32 H 0.07 0.96 6.43 -2.39 -0.02 0.95 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 1.94 6.43 -2.38 -0.02 1.93 16 37 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.41 14.95 8.49 -92.71 -0.79 14.16 16 39 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 40 H 0.09 4.55 7.90 -2.91 -0.02 4.53 16 41 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 42 H 0.15 3.96 8.06 -2.91 -0.02 3.94 16 43 H 0.14 4.28 8.06 -2.91 -0.02 4.25 16 44 H 0.11 4.76 7.96 -2.91 -0.02 4.74 16 45 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 46 H 0.08 1.81 6.43 -2.38 -0.02 1.79 16 47 H 0.06 0.95 6.43 -2.39 -0.02 0.93 16 48 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 Total: -1.00 -63.02 381.34 4.15 -58.87 By element: Atomic # 1 Polarization: 41.40 SS G_CDS: 0.14 Total: 41.54 kcal Atomic # 6 Polarization: -38.46 SS G_CDS: 3.96 Total: -34.50 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -1.93 Total: -78.53 kcal Atomic # 8 Polarization: -30.51 SS G_CDS: -0.05 Total: -30.56 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.17 kcal Total: -63.02 4.15 -58.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267935830.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.553 kcal (2) G-P(sol) polarization free energy of solvation -63.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds