Wall clock time and date at job start Tue Mar 31 2020 11:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46680 * 2 1 4 4 C 1.52997 * 109.46800 * 119.99499 * 2 1 3 5 5 C 1.52999 * 109.47418 * 295.00031 * 4 2 1 6 6 C 1.53002 * 109.46966 * 175.00210 * 5 4 2 7 7 C 1.52999 * 109.46966 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.46992 * 299.99554 * 7 6 5 9 9 C 1.53002 * 109.46901 * 60.00406 * 8 7 6 10 10 C 1.52996 * 109.46992 * 294.99764 * 5 4 2 11 11 C 1.50698 * 109.46775 * 239.99461 * 2 1 3 12 12 O 1.21282 * 120.00015 * 239.99472 * 11 2 1 13 13 N 1.34777 * 119.99905 * 60.00500 * 11 2 1 14 14 C 1.39936 * 120.00095 * 175.08421 * 13 11 2 15 15 C 1.39297 * 119.94795 * 326.48930 * 14 13 11 16 16 C 1.38482 * 120.42721 * 179.75526 * 15 14 13 17 17 C 1.37686 * 120.32348 * 0.52157 * 16 15 14 18 18 C 1.40742 * 119.88197 * 359.73829 * 17 16 15 19 19 C 1.41415 * 120.20706 * 180.02562 * 18 17 16 20 20 H 1.07995 * 119.99749 * 151.37919 * 19 18 17 21 21 C 1.39935 * 119.99740 * 331.36742 * 19 18 17 22 22 N 1.30827 * 119.99448 * 166.68911 * 21 19 18 23 23 Si 1.86794 * 120.00312 * 346.69155 * 21 19 18 24 24 H 1.48503 * 109.47229 * 95.29835 * 23 21 19 25 25 H 1.48495 * 109.47504 * 215.30639 * 23 21 19 26 26 H 1.48507 * 109.46978 * 335.30724 * 23 21 19 27 27 C 1.38242 * 119.94461 * 146.75851 * 14 13 11 28 28 H 1.09006 * 109.47249 * 300.00729 * 1 2 3 29 29 H 1.09003 * 109.47052 * 59.99905 * 1 2 3 30 30 H 1.09001 * 109.47343 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46729 * 174.99599 * 4 2 1 32 32 H 1.09003 * 109.47122 * 55.00505 * 4 2 1 33 33 H 1.09000 * 109.47108 * 55.00108 * 5 4 2 34 34 H 1.09000 * 109.47290 * 60.00011 * 6 5 4 35 35 H 1.09009 * 109.46957 * 299.99992 * 6 5 4 36 36 H 1.09004 * 109.47094 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.47108 * 59.99899 * 7 6 5 38 38 H 1.09005 * 109.47018 * 179.97438 * 8 7 6 39 39 H 1.09000 * 109.47476 * 300.00119 * 8 7 6 40 40 H 1.09000 * 109.47290 * 59.99599 * 9 8 7 41 41 H 1.09002 * 109.47224 * 179.97438 * 9 8 7 42 42 H 1.09000 * 109.47476 * 300.00119 * 10 5 4 43 43 H 1.09007 * 109.46692 * 60.00353 * 10 5 4 44 44 H 0.97000 * 120.00032 * 355.09184 * 13 11 2 45 45 H 1.07999 * 119.78291 * 0.02562 * 15 14 13 46 46 H 1.08002 * 119.83994 * 180.25778 * 16 15 14 47 47 H 1.08004 * 120.06193 * 179.76306 * 17 16 15 48 48 H 0.97008 * 119.99635 * 179.97438 * 22 21 19 49 49 H 1.07997 * 120.16179 * 359.96546 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.6352 0.0691 2.4953 6 6 2.0353 -0.7134 3.7478 7 6 1.6311 0.0771 4.9938 8 6 2.3413 1.4323 4.9906 9 6 1.9412 2.2148 3.7381 10 6 2.3449 1.4245 2.4924 11 6 2.0323 -0.7105 -1.2304 12 8 2.7296 -1.6966 -1.1191 13 7 1.7067 -0.2501 -2.4545 14 6 2.2555 -0.8466 -3.5952 15 6 3.5490 -1.3621 -3.5564 16 6 4.1000 -1.9590 -4.6779 17 6 3.3785 -2.0399 -5.8478 18 6 2.0723 -1.5186 -5.9035 19 6 1.3249 -1.5984 -7.1013 20 1 0.2467 -1.6467 -7.0627 21 6 1.9823 -1.6146 -8.3365 22 7 1.3296 -1.9471 -9.4204 23 14 3.7917 -1.1617 -8.4375 24 1 4.6146 -2.3969 -8.3906 25 1 4.0515 -0.4418 -9.7101 26 1 4.1475 -0.2861 -7.2920 27 6 1.5151 -0.9184 -4.7605 28 1 -0.3634 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1262 -0.7994 1.2056 32 1 1.6053 -1.7197 1.2952 33 1 0.5562 0.2238 2.4928 34 1 3.1142 -0.8681 3.7503 35 1 1.5297 -1.6791 3.7498 36 1 1.9157 -0.4805 5.8861 37 1 0.5522 0.2323 4.9915 38 1 2.0530 1.9957 5.8781 39 1 3.4202 1.2771 4.9928 40 1 0.8623 2.3699 3.7359 41 1 2.4468 3.1804 3.7360 42 1 3.4238 1.2697 2.4949 43 1 2.0598 1.9819 1.6001 44 1 1.0920 0.4948 -2.5448 45 1 4.1242 -1.2997 -2.6445 46 1 5.1023 -2.3592 -4.6360 47 1 3.8138 -2.5029 -6.7210 48 1 1.7853 -1.9580 -10.2768 49 1 0.5136 -0.5156 -4.7926 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272973281.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:00 Heat of formation + Delta-G solvation = -58.472173 kcal Electronic energy + Delta-G solvation = -25910.600190 eV Core-core repulsion = 22414.289499 eV Total energy + Delta-G solvation = -3496.310691 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.22928 -38.97195 -37.51681 -34.93382 -34.47198 -33.20601 -31.20465 -30.86912 -30.26316 -28.61290 -26.47126 -25.12813 -24.17794 -22.88701 -21.85622 -21.11055 -20.57203 -19.85461 -19.24330 -17.78642 -16.98106 -16.00415 -15.63090 -15.50212 -15.31743 -14.73492 -14.51531 -14.37799 -14.22642 -13.98637 -13.64420 -13.33345 -13.22329 -12.67661 -12.65083 -12.46607 -12.43038 -12.08533 -12.06441 -11.92728 -11.64859 -11.42288 -11.36865 -11.16106 -11.03996 -10.91727 -10.69385 -10.60905 -10.56109 -10.26569 -10.13537 -10.11191 -9.66591 -9.44724 -9.34957 -8.90065 -7.67730 -7.11944 -6.91426 -4.49686 2.36442 2.64352 3.09319 3.16399 3.24532 3.34477 3.51656 4.00268 4.38631 4.41910 4.49950 4.53837 4.72906 4.81878 4.85587 5.00745 5.05453 5.17300 5.26604 5.27389 5.28611 5.34957 5.39937 5.44266 5.54003 5.67139 5.73959 5.76590 5.79723 5.86793 5.90070 5.95154 6.01195 6.02796 6.05619 6.11862 6.23886 6.33983 6.34799 6.41089 6.55825 6.73584 6.81602 7.15650 7.35012 7.49191 7.66754 7.85771 7.93846 8.14883 8.35329 8.56597 8.66552 8.82019 10.11154 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.035106 B = 0.002351 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.401092 B =11905.926413 C =12110.681584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 H 0.098 0.902 4 C -0.095 4.095 5 C -0.088 4.088 6 C -0.115 4.115 7 C -0.119 4.119 8 C -0.120 4.120 9 C -0.119 4.119 10 C -0.118 4.118 11 C 0.510 3.490 12 O -0.522 6.522 13 N -0.670 5.670 14 C 0.168 3.832 15 C -0.231 4.231 16 C -0.068 4.068 17 C -0.243 4.243 18 C 0.105 3.895 19 C -0.446 4.446 20 H 0.090 0.910 21 C 0.082 3.918 22 N -0.814 5.814 23 Si 0.915 3.085 24 H -0.272 1.272 25 H -0.295 1.295 26 H -0.241 1.241 27 C -0.233 4.233 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.401 0.599 45 H 0.107 0.893 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.285 0.715 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.351 8.250 23.154 24.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 H 0.116 0.884 4 C -0.133 4.133 5 C -0.106 4.106 6 C -0.152 4.152 7 C -0.157 4.157 8 C -0.158 4.158 9 C -0.157 4.157 10 C -0.156 4.156 11 C 0.297 3.703 12 O -0.397 6.397 13 N -0.314 5.314 14 C 0.076 3.924 15 C -0.252 4.252 16 C -0.087 4.087 17 C -0.262 4.262 18 C 0.101 3.899 19 C -0.475 4.475 20 H 0.108 0.892 21 C -0.136 4.136 22 N -0.439 5.439 23 Si 0.743 3.257 24 H -0.199 1.199 25 H -0.223 1.223 26 H -0.164 1.164 27 C -0.254 4.254 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.236 0.764 45 H 0.125 0.875 46 H 0.115 0.885 47 H 0.116 0.884 48 H 0.095 0.905 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.079 7.509 22.998 24.193 hybrid contribution 0.384 0.465 -0.401 0.725 sum 0.463 7.973 22.597 23.967 Atomic orbital electron populations 1.21845 0.93114 1.02941 1.02498 1.21377 0.97536 1.00955 0.93349 0.88448 1.21438 1.01890 0.98713 0.91230 1.21236 1.00375 0.94832 0.94179 1.21575 1.01450 0.98345 0.93856 1.21529 1.00289 0.96005 0.97836 1.21541 1.00442 0.96110 0.97676 1.21524 1.01106 0.98302 0.94751 1.21659 1.00565 0.95690 0.97639 1.20689 0.80607 0.84599 0.84443 1.90706 1.37214 1.25263 1.86494 1.43574 1.47227 1.35469 1.05097 1.17526 0.92489 0.97166 0.85223 1.20330 0.94914 1.11125 0.98793 1.20475 0.97776 0.97522 0.92934 1.20988 0.97857 1.09887 0.97471 1.17496 0.91195 0.88341 0.92824 1.19449 0.96257 1.43104 0.88685 0.89241 1.26161 1.00942 0.91325 0.95211 1.69664 1.39469 1.34464 1.00277 0.86276 0.81702 0.80019 0.77713 1.19873 1.22271 1.16402 1.20687 1.00031 1.10862 0.93855 0.91297 0.92142 0.91935 0.91046 0.91193 0.90857 0.91931 0.91955 0.92258 0.92132 0.92384 0.92088 0.92121 0.92231 0.91912 0.91776 0.76417 0.87500 0.88501 0.88393 0.90503 0.87923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 8.85 37.16 0.33 -1.00 16 2 C -0.11 -1.21 2.60 -91.77 -0.24 -1.45 16 3 H 0.10 0.91 6.34 -51.93 -0.33 0.58 16 4 C -0.09 -1.01 3.50 -26.73 -0.09 -1.10 16 5 C -0.09 -0.71 2.06 -90.62 -0.19 -0.90 16 6 C -0.11 -0.90 5.20 -26.73 -0.14 -1.04 16 7 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 8 C -0.12 -0.80 5.92 -26.73 -0.16 -0.96 16 9 C -0.12 -0.81 5.92 -26.76 -0.16 -0.97 16 10 C -0.12 -0.91 4.96 -26.76 -0.13 -1.04 16 11 C 0.51 8.20 6.89 -10.99 -0.08 8.12 16 12 O -0.52 -10.52 13.59 5.56 0.08 -10.44 16 13 N -0.67 -11.19 5.26 -9.91 -0.05 -11.24 16 14 C 0.17 3.61 6.27 -83.76 -0.52 3.09 16 15 C -0.23 -5.22 8.67 -39.10 -0.34 -5.56 16 16 C -0.07 -1.57 10.02 -39.69 -0.40 -1.97 16 17 C -0.24 -6.02 6.92 -38.84 -0.27 -6.29 16 18 C 0.11 2.70 5.19 -106.85 -0.55 2.14 16 19 C -0.45 -12.13 9.61 -37.74 -0.36 -12.50 16 20 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 21 C 0.08 2.16 5.47 -17.34 -0.09 2.07 16 22 N -0.81 -21.90 13.93 55.55 0.77 -21.12 16 23 Si 0.92 21.11 24.37 -169.99 -4.14 16.96 16 24 H -0.27 -6.14 6.77 56.52 0.38 -5.76 16 25 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.24 -5.65 6.48 56.52 0.37 -5.28 16 27 C -0.23 -5.39 9.70 -38.68 -0.38 -5.77 16 28 H 0.07 0.50 6.46 -51.93 -0.34 0.16 16 29 H 0.06 0.51 7.46 -51.93 -0.39 0.12 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.87 7.95 -51.93 -0.41 0.45 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.57 6.34 -51.93 -0.33 0.24 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.48 6.46 -51.93 -0.34 0.14 16 44 H 0.40 5.30 8.10 -40.82 -0.33 4.97 16 45 H 0.11 2.38 6.40 -52.49 -0.34 2.04 16 46 H 0.10 1.97 8.06 -52.49 -0.42 1.54 16 47 H 0.10 2.41 4.20 -52.48 -0.22 2.19 16 48 H 0.28 6.94 8.30 -40.82 -0.34 6.61 16 49 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 372.92 15.07 5.62 5.62 Total: -1.00 -30.11 372.92 -9.78 -39.89 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -8.13 Total: 6.42 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: -3.93 Total: -26.08 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.72 Total: -32.37 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.08 Total: -10.44 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.14 Total: 16.96 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.11 -9.78 -39.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272973281.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.585 kcal (2) G-P(sol) polarization free energy of solvation -30.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds