Wall clock time and date at job start Tue Mar 31 2020 11:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46680 * 2 1 4 4 C 1.52997 * 109.46800 * 119.99499 * 2 1 3 5 5 C 1.52999 * 109.47418 * 295.00031 * 4 2 1 6 6 C 1.53002 * 109.46966 * 175.00210 * 5 4 2 7 7 C 1.52999 * 109.46966 * 179.97438 * 6 5 4 8 8 C 1.52996 * 109.46992 * 299.99554 * 7 6 5 9 9 C 1.53002 * 109.46901 * 60.00406 * 8 7 6 10 10 C 1.52996 * 109.46992 * 294.99764 * 5 4 2 11 11 C 1.50698 * 109.46775 * 239.99461 * 2 1 3 12 12 O 1.21282 * 120.00015 * 239.99472 * 11 2 1 13 13 N 1.34777 * 119.99905 * 60.00500 * 11 2 1 14 14 C 1.39936 * 120.00095 * 175.08421 * 13 11 2 15 15 C 1.39297 * 119.94795 * 326.48930 * 14 13 11 16 16 C 1.38482 * 120.42721 * 179.75526 * 15 14 13 17 17 C 1.37686 * 120.32348 * 0.52157 * 16 15 14 18 18 C 1.40742 * 119.88197 * 359.73829 * 17 16 15 19 19 C 1.41415 * 120.20706 * 180.02562 * 18 17 16 20 20 H 1.07995 * 119.99749 * 151.37919 * 19 18 17 21 21 C 1.39935 * 119.99740 * 331.36742 * 19 18 17 22 22 N 1.30827 * 119.99448 * 166.68911 * 21 19 18 23 23 Si 1.86794 * 120.00312 * 346.69155 * 21 19 18 24 24 H 1.48503 * 109.47229 * 95.29835 * 23 21 19 25 25 H 1.48495 * 109.47504 * 215.30639 * 23 21 19 26 26 H 1.48507 * 109.46978 * 335.30724 * 23 21 19 27 27 C 1.38242 * 119.94461 * 146.75851 * 14 13 11 28 28 H 1.09006 * 109.47249 * 300.00729 * 1 2 3 29 29 H 1.09003 * 109.47052 * 59.99905 * 1 2 3 30 30 H 1.09001 * 109.47343 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46729 * 174.99599 * 4 2 1 32 32 H 1.09003 * 109.47122 * 55.00505 * 4 2 1 33 33 H 1.09000 * 109.47108 * 55.00108 * 5 4 2 34 34 H 1.09000 * 109.47290 * 60.00011 * 6 5 4 35 35 H 1.09009 * 109.46957 * 299.99992 * 6 5 4 36 36 H 1.09004 * 109.47094 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.47108 * 59.99899 * 7 6 5 38 38 H 1.09005 * 109.47018 * 179.97438 * 8 7 6 39 39 H 1.09000 * 109.47476 * 300.00119 * 8 7 6 40 40 H 1.09000 * 109.47290 * 59.99599 * 9 8 7 41 41 H 1.09002 * 109.47224 * 179.97438 * 9 8 7 42 42 H 1.09000 * 109.47476 * 300.00119 * 10 5 4 43 43 H 1.09007 * 109.46692 * 60.00353 * 10 5 4 44 44 H 0.97000 * 120.00032 * 355.09184 * 13 11 2 45 45 H 1.07999 * 119.78291 * 0.02562 * 15 14 13 46 46 H 1.08002 * 119.83994 * 180.25778 * 16 15 14 47 47 H 1.08004 * 120.06193 * 179.76306 * 17 16 15 48 48 H 0.97008 * 119.99635 * 179.97438 * 22 21 19 49 49 H 1.07997 * 120.16179 * 359.96546 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.6352 0.0691 2.4953 6 6 2.0353 -0.7134 3.7478 7 6 1.6311 0.0771 4.9938 8 6 2.3413 1.4323 4.9906 9 6 1.9412 2.2148 3.7381 10 6 2.3449 1.4245 2.4924 11 6 2.0323 -0.7105 -1.2304 12 8 2.7296 -1.6966 -1.1191 13 7 1.7067 -0.2501 -2.4545 14 6 2.2555 -0.8466 -3.5952 15 6 3.5490 -1.3621 -3.5564 16 6 4.1000 -1.9590 -4.6779 17 6 3.3785 -2.0399 -5.8478 18 6 2.0723 -1.5186 -5.9035 19 6 1.3249 -1.5984 -7.1013 20 1 0.2467 -1.6467 -7.0627 21 6 1.9823 -1.6146 -8.3365 22 7 1.3296 -1.9471 -9.4204 23 14 3.7917 -1.1617 -8.4375 24 1 4.6146 -2.3969 -8.3906 25 1 4.0515 -0.4418 -9.7101 26 1 4.1475 -0.2861 -7.2920 27 6 1.5151 -0.9184 -4.7605 28 1 -0.3634 0.5140 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 3.1262 -0.7994 1.2056 32 1 1.6053 -1.7197 1.2952 33 1 0.5562 0.2238 2.4928 34 1 3.1142 -0.8681 3.7503 35 1 1.5297 -1.6791 3.7498 36 1 1.9157 -0.4805 5.8861 37 1 0.5522 0.2323 4.9915 38 1 2.0530 1.9957 5.8781 39 1 3.4202 1.2771 4.9928 40 1 0.8623 2.3699 3.7359 41 1 2.4468 3.1804 3.7360 42 1 3.4238 1.2697 2.4949 43 1 2.0598 1.9819 1.6001 44 1 1.0920 0.4948 -2.5448 45 1 4.1242 -1.2997 -2.6445 46 1 5.1023 -2.3592 -4.6360 47 1 3.8138 -2.5029 -6.7210 48 1 1.7853 -1.9580 -10.2768 49 1 0.5136 -0.5156 -4.7926 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272973281.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:06:58 Heat of formation + Delta-G solvation = -73.986629 kcal Electronic energy + Delta-G solvation = -25911.272947 eV Core-core repulsion = 22414.289499 eV Total energy + Delta-G solvation = -3496.983448 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.54250 -39.87372 -39.10234 -36.18110 -35.79568 -35.02389 -32.24769 -31.89406 -31.50348 -30.21004 -27.22239 -27.06810 -25.26308 -23.55741 -23.06329 -22.88847 -21.69593 -20.69561 -20.30183 -19.56294 -18.24484 -17.81892 -17.14757 -16.58389 -16.31207 -16.24235 -15.69916 -15.45456 -15.22561 -14.88544 -14.82628 -14.55816 -14.36767 -14.21241 -14.09149 -13.82798 -13.53884 -13.16185 -13.03409 -12.92240 -12.76529 -12.67917 -12.60971 -12.43469 -12.13058 -11.96318 -11.92106 -11.89649 -11.57681 -11.56441 -11.23234 -11.19063 -10.99020 -10.87461 -10.74014 -10.51096 -9.58088 -8.89540 -8.86565 -6.54303 0.63891 0.76533 1.27398 1.41445 1.49739 1.71411 2.13032 2.18714 2.62525 3.47086 3.61643 3.68629 3.82847 3.97225 4.06713 4.12940 4.26253 4.34471 4.38440 4.47891 4.51959 4.56415 4.61790 4.67115 4.68861 4.71327 4.80241 4.83299 4.89365 4.94156 4.95338 5.01036 5.02785 5.13375 5.20913 5.24130 5.30471 5.32857 5.34476 5.39171 5.44262 5.46929 5.55343 5.58910 5.68209 5.69595 5.79063 5.91205 6.19081 6.33569 6.61985 6.68554 6.80503 7.25871 8.18509 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.035106 B = 0.002351 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.401092 B =11905.926413 C =12110.681584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.123 0.877 4 C -0.091 4.091 5 C -0.079 4.079 6 C -0.117 4.117 7 C -0.116 4.116 8 C -0.121 4.121 9 C -0.117 4.117 10 C -0.118 4.118 11 C 0.507 3.493 12 O -0.564 6.564 13 N -0.662 5.662 14 C 0.176 3.824 15 C -0.231 4.231 16 C -0.071 4.071 17 C -0.259 4.259 18 C 0.087 3.913 19 C -0.477 4.477 20 H 0.060 0.940 21 C 0.045 3.955 22 N -0.851 5.851 23 Si 0.969 3.031 24 H -0.263 1.263 25 H -0.280 1.280 26 H -0.248 1.248 27 C -0.240 4.240 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.052 0.948 43 H 0.071 0.929 44 H 0.420 0.580 45 H 0.113 0.887 46 H 0.125 0.875 47 H 0.098 0.902 48 H 0.294 0.706 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.032 9.969 25.427 27.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.119 4.119 3 H 0.141 0.859 4 C -0.129 4.129 5 C -0.097 4.097 6 C -0.154 4.154 7 C -0.154 4.154 8 C -0.159 4.159 9 C -0.155 4.155 10 C -0.156 4.156 11 C 0.297 3.703 12 O -0.442 6.442 13 N -0.308 5.308 14 C 0.082 3.918 15 C -0.252 4.252 16 C -0.090 4.090 17 C -0.278 4.278 18 C 0.084 3.916 19 C -0.507 4.507 20 H 0.078 0.922 21 C -0.169 4.169 22 N -0.477 5.477 23 Si 0.793 3.207 24 H -0.189 1.189 25 H -0.207 1.207 26 H -0.171 1.171 27 C -0.261 4.261 28 H 0.114 0.886 29 H 0.089 0.911 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.089 0.911 44 H 0.258 0.742 45 H 0.131 0.869 46 H 0.143 0.857 47 H 0.116 0.884 48 H 0.104 0.896 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.432 9.253 25.291 26.934 hybrid contribution 0.254 -0.090 -0.898 0.937 sum 0.686 9.163 24.393 26.066 Atomic orbital electron populations 1.21884 0.91189 1.02741 1.04417 1.21413 0.98888 1.01283 0.90283 0.85929 1.21395 1.00528 0.98488 0.92469 1.21173 1.01065 0.94706 0.92765 1.21581 1.00841 0.98495 0.94496 1.21513 1.00659 0.95981 0.97245 1.21555 1.00077 0.96076 0.98160 1.21515 1.01617 0.98274 0.94079 1.21664 0.99905 0.95438 0.98577 1.21695 0.79377 0.84029 0.85247 1.90688 1.39116 1.27324 1.87063 1.43572 1.47368 1.35746 1.04086 1.17566 0.92012 0.96040 0.86213 1.20597 0.95365 1.10423 0.98812 1.20801 0.98969 0.96992 0.92228 1.21075 0.97813 1.10592 0.98337 1.17674 0.91903 0.88965 0.93079 1.19439 0.95097 1.45911 0.90238 0.92218 1.26825 1.04471 0.90978 0.94623 1.69689 1.41117 1.35943 1.00981 0.85451 0.77419 0.79951 0.77850 1.18897 1.20741 1.17117 1.20847 1.00705 1.10690 0.93886 0.88586 0.91097 0.93225 0.92989 0.92765 0.89586 0.92911 0.92288 0.91930 0.91500 0.91485 0.92694 0.91352 0.91753 0.92933 0.91060 0.74183 0.86935 0.85709 0.88442 0.89581 0.86784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.85 71.98 0.64 -1.53 16 2 C -0.10 -1.88 2.60 -11.54 -0.03 -1.91 16 3 H 0.12 1.82 6.34 -2.39 -0.02 1.81 16 4 C -0.09 -1.80 3.50 30.59 0.11 -1.69 16 5 C -0.08 -1.10 2.06 -10.79 -0.02 -1.12 16 6 C -0.12 -1.67 5.20 30.59 0.16 -1.51 16 7 C -0.12 -1.34 5.92 30.59 0.18 -1.16 16 8 C -0.12 -1.33 5.92 30.59 0.18 -1.15 16 9 C -0.12 -1.25 5.92 30.58 0.18 -1.07 16 10 C -0.12 -1.51 4.96 30.58 0.15 -1.36 16 11 C 0.51 15.45 6.89 87.66 0.60 16.05 16 12 O -0.56 -22.32 13.59 -3.04 -0.04 -22.36 16 13 N -0.66 -20.80 5.26 -303.65 -1.60 -22.40 16 14 C 0.18 7.32 6.27 38.10 0.24 7.56 16 15 C -0.23 -10.11 8.67 22.58 0.20 -9.92 16 16 C -0.07 -3.17 10.02 22.20 0.22 -2.95 16 17 C -0.26 -12.72 6.92 22.75 0.16 -12.56 16 18 C 0.09 4.51 5.19 -21.31 -0.11 4.40 16 19 C -0.48 -26.88 9.61 23.46 0.23 -26.65 16 20 H 0.06 3.58 8.06 -2.91 -0.02 3.56 16 21 C 0.05 2.45 5.47 85.25 0.47 2.91 16 22 N -0.85 -46.92 13.93 21.82 0.30 -46.62 16 23 Si 0.97 43.48 24.37 68.60 1.67 45.15 16 24 H -0.26 -11.32 6.77 99.48 0.67 -10.64 16 25 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 26 H -0.25 -11.27 6.48 99.48 0.65 -10.63 16 27 C -0.24 -11.04 9.70 22.85 0.22 -10.82 16 28 H 0.10 0.96 6.46 -2.38 -0.02 0.95 16 29 H 0.07 0.94 7.46 -2.39 -0.02 0.92 16 30 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 1.23 7.95 -2.39 -0.02 1.21 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 1.02 6.34 -2.39 -0.02 1.00 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 37 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 43 H 0.07 0.81 6.46 -2.38 -0.02 0.79 16 44 H 0.42 9.96 8.10 -92.71 -0.75 9.21 16 45 H 0.11 4.83 6.40 -2.91 -0.02 4.81 16 46 H 0.12 4.77 8.06 -2.91 -0.02 4.74 16 47 H 0.10 4.74 4.20 -2.91 -0.01 4.73 16 48 H 0.29 14.56 8.30 -92.70 -0.77 13.79 16 49 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -66.45 372.92 4.20 -62.26 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: 0.09 Total: 28.44 kcal Atomic # 6 Polarization: -48.25 SS G_CDS: 3.77 Total: -44.48 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: -1.29 Total: -69.01 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.04 Total: -22.36 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.67 Total: 45.15 kcal Total: -66.45 4.20 -62.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272973281.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.730 kcal (2) G-P(sol) polarization free energy of solvation -66.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds