Wall clock time and date at job start Tue Mar 31 2020 11:27:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08998 * 109.47102 * 2 1
4 4 C 1.50696 * 109.47337 * 239.99660 * 2 1 3
5 5 H 1.07999 * 119.99909 * 239.99974 * 4 2 1
6 6 C 1.37877 * 120.00092 * 60.27694 * 4 2 1
7 7 N 1.31515 * 119.99763 * 359.72067 * 6 4 2
8 8 Si 1.86804 * 119.99980 * 179.72467 * 6 4 2
9 9 H 1.48499 * 109.47010 * 0.02562 * 8 6 4
10 10 H 1.48507 * 109.47014 * 119.99760 * 8 6 4
11 11 H 1.48496 * 109.47051 * 239.99402 * 8 6 4
12 12 N 1.46506 * 109.47038 * 119.99264 * 2 1 3
13 13 C 1.34778 * 120.00232 * 275.00413 * 12 2 1
14 14 O 1.21280 * 119.99645 * 354.47414 * 13 12 2
15 15 C 1.50691 * 120.00034 * 174.47883 * 13 12 2
16 16 C 1.50702 * 115.55120 * 302.34048 * 15 13 12
17 17 C 1.38238 * 120.00087 * 148.06393 * 16 15 13
18 18 C 1.38231 * 119.99757 * 179.76785 * 17 16 15
19 19 C 1.38244 * 120.00113 * 0.48685 * 18 17 16
20 20 C 1.50702 * 119.99914 * 179.76783 * 19 18 17
21 21 C 1.52999 * 109.46931 * 240.02363 * 20 19 18
22 22 C 1.52997 * 109.46967 * 0.02562 * 20 19 18
23 23 C 1.53001 * 109.46833 * 120.02373 * 20 19 18
24 24 C 1.38235 * 119.99921 * 359.79327 * 19 18 17
25 25 C 1.38235 * 119.99796 * 328.34444 * 16 15 13
26 26 C 1.52997 * 117.50072 * 156.67380 * 15 13 12
27 27 C 1.53005 * 117.50034 * 88.01149 * 15 13 12
28 28 H 1.08995 * 109.47082 * 60.00778 * 1 2 3
29 29 H 1.09004 * 109.46788 * 180.02562 * 1 2 3
30 30 H 1.09000 * 109.47146 * 300.00312 * 1 2 3
31 31 H 0.97009 * 119.99441 * 180.02562 * 7 6 4
32 32 H 0.96999 * 119.99847 * 95.00175 * 12 2 1
33 33 H 1.07998 * 119.99940 * 359.97438 * 17 16 15
34 34 H 1.07999 * 120.00078 * 180.25312 * 18 17 16
35 35 H 1.08994 * 109.47581 * 60.00231 * 21 20 19
36 36 H 1.09001 * 109.47252 * 180.02562 * 21 20 19
37 37 H 1.09003 * 109.47157 * 299.99625 * 21 20 19
38 38 H 1.08995 * 109.47561 * 59.99965 * 22 20 19
39 39 H 1.09010 * 109.46613 * 179.97438 * 22 20 19
40 40 H 1.09003 * 109.47206 * 299.99244 * 22 20 19
41 41 H 1.08996 * 109.47561 * 59.99815 * 23 20 19
42 42 H 1.08998 * 109.46891 * 180.02562 * 23 20 19
43 43 H 1.08995 * 109.47040 * 299.99634 * 23 20 19
44 44 H 1.07999 * 120.00287 * 179.97438 * 24 19 18
45 45 H 1.08005 * 120.00192 * 359.97438 * 25 16 15
46 46 H 1.09001 * 117.49938 * 359.97438 * 26 15 13
47 47 H 1.09000 * 117.50165 * 145.02027 * 26 15 13
48 48 H 1.09003 * 117.49372 * 214.98143 * 27 15 13
49 49 H 1.08992 * 117.49465 * 359.97438 * 27 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0276 0.0000
4 6 2.0324 -0.7104 -1.2304
5 1 2.6533 -1.5885 -1.1312
6 6 1.7041 -0.2362 -2.4827
7 7 0.9479 0.8331 -2.6034
8 14 2.3332 -1.1124 -4.0078
9 1 3.1566 -2.2802 -3.6035
10 1 1.1815 -1.5775 -4.8219
11 1 3.1608 -0.1765 -4.8104
12 7 2.0184 -0.6905 1.1963
13 6 2.1470 -0.0180 2.3573
14 8 1.9551 1.1791 2.3890
15 6 2.5294 -0.7536 3.6156
16 6 1.6103 -1.8790 4.0154
17 6 2.1176 -2.9869 4.6684
18 6 1.2738 -4.0170 5.0393
19 6 -0.0757 -3.9439 4.7484
20 6 -0.9948 -5.0694 5.1482
21 6 -1.6579 -5.6543 3.8995
22 6 -0.1878 -6.1599 5.8555
23 6 -2.0716 -4.5364 6.0954
24 6 -0.5820 -2.8387 4.0903
25 6 0.2610 -1.8062 3.7240
26 6 3.1828 0.0569 4.7368
27 6 4.0214 -0.9214 3.9103
28 1 -0.3633 0.5137 -0.8900
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3633 0.5139 0.8900
31 1 0.7166 1.1665 -3.4845
32 1 2.2491 -1.6316 1.1528
33 1 3.1726 -3.0460 4.8916
34 1 1.6694 -4.8807 5.5531
35 1 -0.8908 -6.0339 3.2247
36 1 -2.3230 -6.4680 4.1887
37 1 -2.2328 -4.8773 3.3957
38 1 0.2846 -5.7433 6.7450
39 1 -0.8527 -6.9738 6.1450
40 1 0.5794 -6.5397 5.1806
41 1 -2.6465 -3.7594 5.5916
42 1 -2.7361 -5.3505 6.3849
43 1 -1.5992 -4.1197 6.9849
44 1 -1.6362 -2.7817 3.8626
45 1 -0.1347 -0.9425 3.2102
46 1 3.3366 1.1220 4.5640
47 1 2.9483 -0.2242 5.7635
48 1 4.3380 -1.8457 4.3935
49 1 4.7263 -0.5001 3.1936
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001321756786.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:27:10
Heat of formation + Delta-G solvation = -7.794530 kcal
Electronic energy + Delta-G solvation = -26737.043191 eV
Core-core repulsion = 23242.930048 eV
Total energy + Delta-G solvation = -3494.113143 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-40.38445 -39.09226 -37.03890 -35.49211 -34.59906 -32.32076 -31.07825 -29.76785
-28.88500 -27.54742 -27.39795 -25.27480 -24.58113 -22.78674 -22.52511 -21.65576
-20.39044 -19.38062 -18.93566 -17.61269 -16.43624 -15.77772 -15.31285 -15.18869
-14.94969 -14.62524 -14.44868 -14.35871 -13.80661 -13.71140 -13.36512 -13.27438
-12.89171 -12.82442 -12.41703 -12.26908 -12.19410 -11.96740 -11.86036 -11.69168
-11.50783 -11.33771 -11.17890 -11.08656 -10.95565 -10.82343 -10.77886 -10.58474
-10.43100 -10.30035 -10.27281 -10.19465 -9.02671 -9.01313 -8.81250 -8.54561
-8.31253 -7.86299 -6.11295 -4.19931 1.36708 1.51081 3.22266 3.24581
3.32097 3.35148 3.68416 3.95631 4.21664 4.38618 4.44311 4.59714
4.66419 4.82935 4.96705 5.02946 5.10675 5.13286 5.20981 5.22221
5.35980 5.41191 5.44907 5.48908 5.57919 5.65822 5.67642 5.70986
5.74687 5.81364 5.89094 5.90943 5.96924 6.09816 6.13569 6.14911
6.15704 6.23789 6.55891 6.68516 6.72714 6.83166 6.95997 7.07743
7.15531 7.47568 7.59101 7.71705 7.92838 8.15903 8.70561 8.80248
9.15224 9.47714 10.94845
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.012457 B = 0.003779 C = 0.003253
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2247.221180 B = 7408.081156 C = 8606.289695
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.263 3.737
3 H 0.049 0.951
4 C -0.531 4.531
5 H 0.061 0.939
6 C 0.066 3.934
7 N -0.884 5.884
8 Si 0.900 3.100
9 H -0.273 1.273
10 H -0.283 1.283
11 H -0.283 1.283
12 N -0.699 5.699
13 C 0.541 3.459
14 O -0.552 6.552
15 C -0.122 4.122
16 C -0.039 4.039
17 C -0.116 4.116
18 C -0.121 4.121
19 C -0.076 4.076
20 C -0.029 4.029
21 C -0.140 4.140
22 C -0.143 4.143
23 C -0.138 4.138
24 C -0.109 4.109
25 C -0.097 4.097
26 C -0.137 4.137
27 C -0.158 4.158
28 H 0.090 0.910
29 H 0.027 0.973
30 H 0.012 0.988
31 H 0.263 0.737
32 H 0.390 0.610
33 H 0.123 0.877
34 H 0.124 0.876
35 H 0.057 0.943
36 H 0.056 0.944
37 H 0.058 0.942
38 H 0.057 0.943
39 H 0.055 0.945
40 H 0.059 0.941
41 H 0.058 0.942
42 H 0.056 0.944
43 H 0.055 0.945
44 H 0.120 0.880
45 H 0.123 0.877
46 H 0.107 0.893
47 H 0.099 0.901
48 H 0.103 0.897
49 H 0.102 0.898
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.280 -12.758 17.614 21.786
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C 0.162 3.838
3 H 0.067 0.933
4 C -0.569 4.569
5 H 0.079 0.921
6 C -0.137 4.137
7 N -0.522 5.522
8 Si 0.728 3.272
9 H -0.197 1.197
10 H -0.209 1.209
11 H -0.209 1.209
12 N -0.345 5.345
13 C 0.324 3.676
14 O -0.431 6.431
15 C -0.125 4.125
16 C -0.040 4.040
17 C -0.134 4.134
18 C -0.139 4.139
19 C -0.076 4.076
20 C -0.029 4.029
21 C -0.197 4.197
22 C -0.200 4.200
23 C -0.195 4.195
24 C -0.127 4.127
25 C -0.115 4.115
26 C -0.174 4.174
27 C -0.195 4.195
28 H 0.109 0.891
29 H 0.046 0.954
30 H 0.031 0.969
31 H 0.073 0.927
32 H 0.222 0.778
33 H 0.140 0.860
34 H 0.142 0.858
35 H 0.077 0.923
36 H 0.075 0.925
37 H 0.078 0.922
38 H 0.076 0.924
39 H 0.075 0.925
40 H 0.078 0.922
41 H 0.077 0.923
42 H 0.075 0.925
43 H 0.074 0.926
44 H 0.138 0.862
45 H 0.140 0.860
46 H 0.126 0.874
47 H 0.117 0.883
48 H 0.121 0.879
49 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges -1.539 -11.775 17.440 21.099
hybrid contribution 0.347 -0.863 -1.018 1.379
sum -1.191 -12.638 16.422 20.756
Atomic orbital electron populations
1.22075 0.98465 0.99110 1.00735 1.18762 0.90939 0.94060 0.80060
0.93325 1.21248 1.32340 1.13052 0.90298 0.92063 1.24882 0.94849
0.94935 0.99028 1.69917 1.36056 1.22460 1.23718 0.86408 0.78640
0.79536 0.82611 1.19729 1.20882 1.20878 1.46434 1.64370 1.13652
1.10093 1.19161 0.77765 0.86922 0.83703 1.90651 1.51961 1.14579
1.85917 1.20335 0.95105 0.99536 0.97571 1.18792 0.93048 0.93507
0.98608 1.20981 0.99700 0.93417 0.99333 1.21048 0.92973 0.98802
1.01057 1.19761 0.93927 0.95275 0.98654 1.19479 0.94449 0.93155
0.95777 1.21899 1.00409 1.00718 0.96657 1.21955 0.99970 0.97815
1.00265 1.21888 0.97756 1.00914 0.98983 1.20913 0.99662 0.93417
0.98729 1.21035 0.92778 0.98881 0.98837 1.23010 1.00977 0.98498
0.94918 1.23137 0.91338 1.01710 1.03324 0.89132 0.95395 0.96911
0.92668 0.77787 0.85968 0.85823 0.92341 0.92534 0.92250 0.92358
0.92546 0.92220 0.92335 0.92516 0.92576 0.86213 0.85950 0.87427
0.88278 0.87873 0.87948
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.64 9.26 37.16 0.34 -3.30 16
2 C 0.26 6.80 2.60 -69.08 -0.18 6.62 16
3 H 0.05 1.45 7.50 -51.93 -0.39 1.06 16
4 C -0.53 -14.27 8.73 -34.44 -0.30 -14.57 16
5 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16
6 C 0.07 1.79 5.31 -17.82 -0.09 1.70 16
7 N -0.88 -25.08 11.33 55.43 0.63 -24.45 16
8 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16
9 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16
10 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16
11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
12 N -0.70 -15.09 5.05 -54.93 -0.28 -15.36 16
13 C 0.54 11.20 5.99 -10.99 -0.07 11.14 16
14 O -0.55 -13.59 16.15 5.56 0.09 -13.50 16
15 C -0.12 -1.93 2.37 -156.81 -0.37 -2.30 16
16 C -0.04 -0.57 5.45 -104.62 -0.57 -1.14 16
17 C -0.12 -1.41 9.38 -39.58 -0.37 -1.78 16
18 C -0.12 -1.35 8.98 -39.58 -0.36 -1.70 16
19 C -0.08 -0.87 4.76 -104.62 -0.50 -1.37 16
20 C -0.03 -0.26 0.85 -155.66 -0.13 -0.40 16
21 C -0.14 -1.28 8.29 37.16 0.31 -0.97 16
22 C -0.14 -1.11 7.13 37.16 0.26 -0.84 16
23 C -0.14 -1.17 8.29 37.16 0.31 -0.86 16
24 C -0.11 -1.43 8.71 -39.58 -0.34 -1.78 16
25 C -0.10 -1.49 9.32 -39.58 -0.37 -1.86 16
26 C -0.14 -1.87 9.73 -26.69 -0.26 -2.13 16
27 C -0.16 -2.02 9.58 -26.69 -0.26 -2.28 16
28 H 0.09 2.46 6.08 -51.93 -0.32 2.15 16
29 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16
30 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16
31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16
32 H 0.39 7.69 8.54 -40.82 -0.35 7.34 16
33 H 0.12 1.24 5.93 -52.49 -0.31 0.93 16
34 H 0.12 1.11 5.90 -52.49 -0.31 0.80 16
35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16
36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
37 H 0.06 0.57 7.39 -51.93 -0.38 0.19 16
38 H 0.06 0.43 7.51 -51.93 -0.39 0.04 16
39 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16
40 H 0.06 0.46 7.51 -51.93 -0.39 0.07 16
41 H 0.06 0.51 7.39 -51.93 -0.38 0.13 16
42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16
43 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16
44 H 0.12 1.43 7.10 -52.49 -0.37 1.05 16
45 H 0.12 2.13 7.39 -52.48 -0.39 1.74 16
46 H 0.11 1.60 7.86 -51.93 -0.41 1.19 16
47 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16
48 H 0.10 1.05 6.08 -51.93 -0.32 0.73 16
49 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16
LS Contribution 389.63 15.07 5.87 5.87
Total: -1.00 -30.48 389.63 -9.71 -40.18
By element:
Atomic # 1 Polarization: 17.29 SS G_CDS: -8.05 Total: 9.23 kcal
Atomic # 6 Polarization: -14.87 SS G_CDS: -2.94 Total: -17.81 kcal
Atomic # 7 Polarization: -40.16 SS G_CDS: 0.35 Total: -39.81 kcal
Atomic # 8 Polarization: -13.59 SS G_CDS: 0.09 Total: -13.50 kcal
Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal
Total LS contribution 5.87 Total: 5.87 kcal
Total: -30.48 -9.71 -40.18 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001321756786.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.390 kcal
(2) G-P(sol) polarization free energy of solvation -30.478 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.912 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.185 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.795 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds