Wall clock time and date at job start Tue Mar 31 2020 11:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47102 * 2 1 4 4 C 1.50696 * 109.47337 * 239.99660 * 2 1 3 5 5 H 1.07999 * 119.99909 * 239.99974 * 4 2 1 6 6 C 1.37877 * 120.00092 * 60.27694 * 4 2 1 7 7 N 1.31515 * 119.99763 * 359.72067 * 6 4 2 8 8 Si 1.86804 * 119.99980 * 179.72467 * 6 4 2 9 9 H 1.48499 * 109.47010 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.47014 * 119.99760 * 8 6 4 11 11 H 1.48496 * 109.47051 * 239.99402 * 8 6 4 12 12 N 1.46506 * 109.47038 * 119.99264 * 2 1 3 13 13 C 1.34778 * 120.00232 * 275.00413 * 12 2 1 14 14 O 1.21280 * 119.99645 * 354.47414 * 13 12 2 15 15 C 1.50691 * 120.00034 * 174.47883 * 13 12 2 16 16 C 1.50702 * 115.55120 * 302.34048 * 15 13 12 17 17 C 1.38238 * 120.00087 * 148.06393 * 16 15 13 18 18 C 1.38231 * 119.99757 * 179.76785 * 17 16 15 19 19 C 1.38244 * 120.00113 * 0.48685 * 18 17 16 20 20 C 1.50702 * 119.99914 * 179.76783 * 19 18 17 21 21 C 1.52999 * 109.46931 * 240.02363 * 20 19 18 22 22 C 1.52997 * 109.46967 * 0.02562 * 20 19 18 23 23 C 1.53001 * 109.46833 * 120.02373 * 20 19 18 24 24 C 1.38235 * 119.99921 * 359.79327 * 19 18 17 25 25 C 1.38235 * 119.99796 * 328.34444 * 16 15 13 26 26 C 1.52997 * 117.50072 * 156.67380 * 15 13 12 27 27 C 1.53005 * 117.50034 * 88.01149 * 15 13 12 28 28 H 1.08995 * 109.47082 * 60.00778 * 1 2 3 29 29 H 1.09004 * 109.46788 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47146 * 300.00312 * 1 2 3 31 31 H 0.97009 * 119.99441 * 180.02562 * 7 6 4 32 32 H 0.96999 * 119.99847 * 95.00175 * 12 2 1 33 33 H 1.07998 * 119.99940 * 359.97438 * 17 16 15 34 34 H 1.07999 * 120.00078 * 180.25312 * 18 17 16 35 35 H 1.08994 * 109.47581 * 60.00231 * 21 20 19 36 36 H 1.09001 * 109.47252 * 180.02562 * 21 20 19 37 37 H 1.09003 * 109.47157 * 299.99625 * 21 20 19 38 38 H 1.08995 * 109.47561 * 59.99965 * 22 20 19 39 39 H 1.09010 * 109.46613 * 179.97438 * 22 20 19 40 40 H 1.09003 * 109.47206 * 299.99244 * 22 20 19 41 41 H 1.08996 * 109.47561 * 59.99815 * 23 20 19 42 42 H 1.08998 * 109.46891 * 180.02562 * 23 20 19 43 43 H 1.08995 * 109.47040 * 299.99634 * 23 20 19 44 44 H 1.07999 * 120.00287 * 179.97438 * 24 19 18 45 45 H 1.08005 * 120.00192 * 359.97438 * 25 16 15 46 46 H 1.09001 * 117.49938 * 359.97438 * 26 15 13 47 47 H 1.09000 * 117.50165 * 145.02027 * 26 15 13 48 48 H 1.09003 * 117.49372 * 214.98143 * 27 15 13 49 49 H 1.08992 * 117.49465 * 359.97438 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.7041 -0.2362 -2.4827 7 7 0.9479 0.8331 -2.6034 8 14 2.3332 -1.1124 -4.0078 9 1 3.1566 -2.2802 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1608 -0.1765 -4.8104 12 7 2.0184 -0.6905 1.1963 13 6 2.1470 -0.0180 2.3573 14 8 1.9551 1.1791 2.3890 15 6 2.5294 -0.7536 3.6156 16 6 1.6103 -1.8790 4.0154 17 6 2.1176 -2.9869 4.6684 18 6 1.2738 -4.0170 5.0393 19 6 -0.0757 -3.9439 4.7484 20 6 -0.9948 -5.0694 5.1482 21 6 -1.6579 -5.6543 3.8995 22 6 -0.1878 -6.1599 5.8555 23 6 -2.0716 -4.5364 6.0954 24 6 -0.5820 -2.8387 4.0903 25 6 0.2610 -1.8062 3.7240 26 6 3.1828 0.0569 4.7368 27 6 4.0214 -0.9214 3.9103 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.7166 1.1665 -3.4845 32 1 2.2491 -1.6316 1.1528 33 1 3.1726 -3.0460 4.8916 34 1 1.6694 -4.8807 5.5531 35 1 -0.8908 -6.0339 3.2247 36 1 -2.3230 -6.4680 4.1887 37 1 -2.2328 -4.8773 3.3957 38 1 0.2846 -5.7433 6.7450 39 1 -0.8527 -6.9738 6.1450 40 1 0.5794 -6.5397 5.1806 41 1 -2.6465 -3.7594 5.5916 42 1 -2.7361 -5.3505 6.3849 43 1 -1.5992 -4.1197 6.9849 44 1 -1.6362 -2.7817 3.8626 45 1 -0.1347 -0.9425 3.2102 46 1 3.3366 1.1220 4.5640 47 1 2.9483 -0.2242 5.7635 48 1 4.3380 -1.8457 4.3935 49 1 4.7263 -0.5001 3.1936 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321756786.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:10 Heat of formation + Delta-G solvation = -7.794530 kcal Electronic energy + Delta-G solvation = -26737.043191 eV Core-core repulsion = 23242.930048 eV Total energy + Delta-G solvation = -3494.113143 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.38445 -39.09226 -37.03890 -35.49211 -34.59906 -32.32076 -31.07825 -29.76785 -28.88500 -27.54742 -27.39795 -25.27480 -24.58113 -22.78674 -22.52511 -21.65576 -20.39044 -19.38062 -18.93566 -17.61269 -16.43624 -15.77772 -15.31285 -15.18869 -14.94969 -14.62524 -14.44868 -14.35871 -13.80661 -13.71140 -13.36512 -13.27438 -12.89171 -12.82442 -12.41703 -12.26908 -12.19410 -11.96740 -11.86036 -11.69168 -11.50783 -11.33771 -11.17890 -11.08656 -10.95565 -10.82343 -10.77886 -10.58474 -10.43100 -10.30035 -10.27281 -10.19465 -9.02671 -9.01313 -8.81250 -8.54561 -8.31253 -7.86299 -6.11295 -4.19931 1.36708 1.51081 3.22266 3.24581 3.32097 3.35148 3.68416 3.95631 4.21664 4.38618 4.44311 4.59714 4.66419 4.82935 4.96705 5.02946 5.10675 5.13286 5.20981 5.22221 5.35980 5.41191 5.44907 5.48908 5.57919 5.65822 5.67642 5.70986 5.74687 5.81364 5.89094 5.90943 5.96924 6.09816 6.13569 6.14911 6.15704 6.23789 6.55891 6.68516 6.72714 6.83166 6.95997 7.07743 7.15531 7.47568 7.59101 7.71705 7.92838 8.15903 8.70561 8.80248 9.15224 9.47714 10.94845 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012457 B = 0.003779 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.221180 B = 7408.081156 C = 8606.289695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.263 3.737 3 H 0.049 0.951 4 C -0.531 4.531 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.699 5.699 13 C 0.541 3.459 14 O -0.552 6.552 15 C -0.122 4.122 16 C -0.039 4.039 17 C -0.116 4.116 18 C -0.121 4.121 19 C -0.076 4.076 20 C -0.029 4.029 21 C -0.140 4.140 22 C -0.143 4.143 23 C -0.138 4.138 24 C -0.109 4.109 25 C -0.097 4.097 26 C -0.137 4.137 27 C -0.158 4.158 28 H 0.090 0.910 29 H 0.027 0.973 30 H 0.012 0.988 31 H 0.263 0.737 32 H 0.390 0.610 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.120 0.880 45 H 0.123 0.877 46 H 0.107 0.893 47 H 0.099 0.901 48 H 0.103 0.897 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.280 -12.758 17.614 21.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.728 3.272 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.345 5.345 13 C 0.324 3.676 14 O -0.431 6.431 15 C -0.125 4.125 16 C -0.040 4.040 17 C -0.134 4.134 18 C -0.139 4.139 19 C -0.076 4.076 20 C -0.029 4.029 21 C -0.197 4.197 22 C -0.200 4.200 23 C -0.195 4.195 24 C -0.127 4.127 25 C -0.115 4.115 26 C -0.174 4.174 27 C -0.195 4.195 28 H 0.109 0.891 29 H 0.046 0.954 30 H 0.031 0.969 31 H 0.073 0.927 32 H 0.222 0.778 33 H 0.140 0.860 34 H 0.142 0.858 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.126 0.874 47 H 0.117 0.883 48 H 0.121 0.879 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.539 -11.775 17.440 21.099 hybrid contribution 0.347 -0.863 -1.018 1.379 sum -1.191 -12.638 16.422 20.756 Atomic orbital electron populations 1.22075 0.98465 0.99110 1.00735 1.18762 0.90939 0.94060 0.80060 0.93325 1.21248 1.32340 1.13052 0.90298 0.92063 1.24882 0.94849 0.94935 0.99028 1.69917 1.36056 1.22460 1.23718 0.86408 0.78640 0.79536 0.82611 1.19729 1.20882 1.20878 1.46434 1.64370 1.13652 1.10093 1.19161 0.77765 0.86922 0.83703 1.90651 1.51961 1.14579 1.85917 1.20335 0.95105 0.99536 0.97571 1.18792 0.93048 0.93507 0.98608 1.20981 0.99700 0.93417 0.99333 1.21048 0.92973 0.98802 1.01057 1.19761 0.93927 0.95275 0.98654 1.19479 0.94449 0.93155 0.95777 1.21899 1.00409 1.00718 0.96657 1.21955 0.99970 0.97815 1.00265 1.21888 0.97756 1.00914 0.98983 1.20913 0.99662 0.93417 0.98729 1.21035 0.92778 0.98881 0.98837 1.23010 1.00977 0.98498 0.94918 1.23137 0.91338 1.01710 1.03324 0.89132 0.95395 0.96911 0.92668 0.77787 0.85968 0.85823 0.92341 0.92534 0.92250 0.92358 0.92546 0.92220 0.92335 0.92516 0.92576 0.86213 0.85950 0.87427 0.88278 0.87873 0.87948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.64 9.26 37.16 0.34 -3.30 16 2 C 0.26 6.80 2.60 -69.08 -0.18 6.62 16 3 H 0.05 1.45 7.50 -51.93 -0.39 1.06 16 4 C -0.53 -14.27 8.73 -34.44 -0.30 -14.57 16 5 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 6 C 0.07 1.79 5.31 -17.82 -0.09 1.70 16 7 N -0.88 -25.08 11.33 55.43 0.63 -24.45 16 8 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 12 N -0.70 -15.09 5.05 -54.93 -0.28 -15.36 16 13 C 0.54 11.20 5.99 -10.99 -0.07 11.14 16 14 O -0.55 -13.59 16.15 5.56 0.09 -13.50 16 15 C -0.12 -1.93 2.37 -156.81 -0.37 -2.30 16 16 C -0.04 -0.57 5.45 -104.62 -0.57 -1.14 16 17 C -0.12 -1.41 9.38 -39.58 -0.37 -1.78 16 18 C -0.12 -1.35 8.98 -39.58 -0.36 -1.70 16 19 C -0.08 -0.87 4.76 -104.62 -0.50 -1.37 16 20 C -0.03 -0.26 0.85 -155.66 -0.13 -0.40 16 21 C -0.14 -1.28 8.29 37.16 0.31 -0.97 16 22 C -0.14 -1.11 7.13 37.16 0.26 -0.84 16 23 C -0.14 -1.17 8.29 37.16 0.31 -0.86 16 24 C -0.11 -1.43 8.71 -39.58 -0.34 -1.78 16 25 C -0.10 -1.49 9.32 -39.58 -0.37 -1.86 16 26 C -0.14 -1.87 9.73 -26.69 -0.26 -2.13 16 27 C -0.16 -2.02 9.58 -26.69 -0.26 -2.28 16 28 H 0.09 2.46 6.08 -51.93 -0.32 2.15 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.39 7.69 8.54 -40.82 -0.35 7.34 16 33 H 0.12 1.24 5.93 -52.49 -0.31 0.93 16 34 H 0.12 1.11 5.90 -52.49 -0.31 0.80 16 35 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.57 7.39 -51.93 -0.38 0.19 16 38 H 0.06 0.43 7.51 -51.93 -0.39 0.04 16 39 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 40 H 0.06 0.46 7.51 -51.93 -0.39 0.07 16 41 H 0.06 0.51 7.39 -51.93 -0.38 0.13 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.12 1.43 7.10 -52.49 -0.37 1.05 16 45 H 0.12 2.13 7.39 -52.48 -0.39 1.74 16 46 H 0.11 1.60 7.86 -51.93 -0.41 1.19 16 47 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 48 H 0.10 1.05 6.08 -51.93 -0.32 0.73 16 49 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 389.63 15.07 5.87 5.87 Total: -1.00 -30.48 389.63 -9.71 -40.18 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: -8.05 Total: 9.23 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -2.94 Total: -17.81 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.35 Total: -39.81 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.09 Total: -13.50 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.48 -9.71 -40.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321756786.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.390 kcal (2) G-P(sol) polarization free energy of solvation -30.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds