Wall clock time and date at job start Tue Mar 31 2020 11:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47102 * 2 1 4 4 C 1.50696 * 109.47337 * 239.99660 * 2 1 3 5 5 H 1.07999 * 119.99909 * 239.99974 * 4 2 1 6 6 C 1.37877 * 120.00092 * 60.27694 * 4 2 1 7 7 N 1.31515 * 119.99763 * 359.72067 * 6 4 2 8 8 Si 1.86804 * 119.99980 * 179.72467 * 6 4 2 9 9 H 1.48499 * 109.47010 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.47014 * 119.99760 * 8 6 4 11 11 H 1.48496 * 109.47051 * 239.99402 * 8 6 4 12 12 N 1.46506 * 109.47038 * 119.99264 * 2 1 3 13 13 C 1.34778 * 120.00232 * 275.00413 * 12 2 1 14 14 O 1.21280 * 119.99645 * 354.47414 * 13 12 2 15 15 C 1.50691 * 120.00034 * 174.47883 * 13 12 2 16 16 C 1.50702 * 115.55120 * 302.34048 * 15 13 12 17 17 C 1.38238 * 120.00087 * 148.06393 * 16 15 13 18 18 C 1.38231 * 119.99757 * 179.76785 * 17 16 15 19 19 C 1.38244 * 120.00113 * 0.48685 * 18 17 16 20 20 C 1.50702 * 119.99914 * 179.76783 * 19 18 17 21 21 C 1.52999 * 109.46931 * 240.02363 * 20 19 18 22 22 C 1.52997 * 109.46967 * 0.02562 * 20 19 18 23 23 C 1.53001 * 109.46833 * 120.02373 * 20 19 18 24 24 C 1.38235 * 119.99921 * 359.79327 * 19 18 17 25 25 C 1.38235 * 119.99796 * 328.34444 * 16 15 13 26 26 C 1.52997 * 117.50072 * 156.67380 * 15 13 12 27 27 C 1.53005 * 117.50034 * 88.01149 * 15 13 12 28 28 H 1.08995 * 109.47082 * 60.00778 * 1 2 3 29 29 H 1.09004 * 109.46788 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47146 * 300.00312 * 1 2 3 31 31 H 0.97009 * 119.99441 * 180.02562 * 7 6 4 32 32 H 0.96999 * 119.99847 * 95.00175 * 12 2 1 33 33 H 1.07998 * 119.99940 * 359.97438 * 17 16 15 34 34 H 1.07999 * 120.00078 * 180.25312 * 18 17 16 35 35 H 1.08994 * 109.47581 * 60.00231 * 21 20 19 36 36 H 1.09001 * 109.47252 * 180.02562 * 21 20 19 37 37 H 1.09003 * 109.47157 * 299.99625 * 21 20 19 38 38 H 1.08995 * 109.47561 * 59.99965 * 22 20 19 39 39 H 1.09010 * 109.46613 * 179.97438 * 22 20 19 40 40 H 1.09003 * 109.47206 * 299.99244 * 22 20 19 41 41 H 1.08996 * 109.47561 * 59.99815 * 23 20 19 42 42 H 1.08998 * 109.46891 * 180.02562 * 23 20 19 43 43 H 1.08995 * 109.47040 * 299.99634 * 23 20 19 44 44 H 1.07999 * 120.00287 * 179.97438 * 24 19 18 45 45 H 1.08005 * 120.00192 * 359.97438 * 25 16 15 46 46 H 1.09001 * 117.49938 * 359.97438 * 26 15 13 47 47 H 1.09000 * 117.50165 * 145.02027 * 26 15 13 48 48 H 1.09003 * 117.49372 * 214.98143 * 27 15 13 49 49 H 1.08992 * 117.49465 * 359.97438 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.7041 -0.2362 -2.4827 7 7 0.9479 0.8331 -2.6034 8 14 2.3332 -1.1124 -4.0078 9 1 3.1566 -2.2802 -3.6035 10 1 1.1815 -1.5775 -4.8219 11 1 3.1608 -0.1765 -4.8104 12 7 2.0184 -0.6905 1.1963 13 6 2.1470 -0.0180 2.3573 14 8 1.9551 1.1791 2.3890 15 6 2.5294 -0.7536 3.6156 16 6 1.6103 -1.8790 4.0154 17 6 2.1176 -2.9869 4.6684 18 6 1.2738 -4.0170 5.0393 19 6 -0.0757 -3.9439 4.7484 20 6 -0.9948 -5.0694 5.1482 21 6 -1.6579 -5.6543 3.8995 22 6 -0.1878 -6.1599 5.8555 23 6 -2.0716 -4.5364 6.0954 24 6 -0.5820 -2.8387 4.0903 25 6 0.2610 -1.8062 3.7240 26 6 3.1828 0.0569 4.7368 27 6 4.0214 -0.9214 3.9103 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.7166 1.1665 -3.4845 32 1 2.2491 -1.6316 1.1528 33 1 3.1726 -3.0460 4.8916 34 1 1.6694 -4.8807 5.5531 35 1 -0.8908 -6.0339 3.2247 36 1 -2.3230 -6.4680 4.1887 37 1 -2.2328 -4.8773 3.3957 38 1 0.2846 -5.7433 6.7450 39 1 -0.8527 -6.9738 6.1450 40 1 0.5794 -6.5397 5.1806 41 1 -2.6465 -3.7594 5.5916 42 1 -2.7361 -5.3505 6.3849 43 1 -1.5992 -4.1197 6.9849 44 1 -1.6362 -2.7817 3.8626 45 1 -0.1347 -0.9425 3.2102 46 1 3.3366 1.1220 4.5640 47 1 2.9483 -0.2242 5.7635 48 1 4.3380 -1.8457 4.3935 49 1 4.7263 -0.5001 3.1936 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321756786.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:09 Heat of formation + Delta-G solvation = -23.625513 kcal Electronic energy + Delta-G solvation = -26737.729674 eV Core-core repulsion = 23242.930048 eV Total energy + Delta-G solvation = -3494.799626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.58161 -40.35661 -38.28197 -36.84535 -36.19008 -34.32252 -32.05399 -31.06294 -30.53702 -28.19981 -28.07820 -27.39884 -25.89114 -23.89147 -23.72266 -22.72183 -22.12237 -20.82600 -20.02252 -19.04122 -17.98566 -17.21749 -17.13991 -16.34423 -16.20078 -15.85617 -15.65516 -15.35614 -15.09750 -14.85174 -14.58704 -14.46920 -14.32949 -13.99562 -13.76822 -13.73772 -13.16128 -13.09184 -13.00678 -12.91999 -12.81360 -12.70796 -12.50863 -12.43966 -12.33217 -12.27102 -12.15616 -11.88038 -11.72829 -11.49745 -11.40493 -11.29426 -11.13218 -10.73454 -10.60486 -9.82947 -9.76307 -9.31224 -8.20636 -6.38291 0.38003 0.51907 1.42072 1.42618 1.55313 1.65350 2.30319 2.52375 2.63536 3.05893 3.10100 3.48978 3.71068 3.79499 3.86537 3.94402 4.01412 4.12536 4.16981 4.28586 4.41297 4.48528 4.63942 4.67577 4.69997 4.77105 4.80716 4.84115 4.86091 4.94266 4.95122 5.01138 5.03873 5.07126 5.07992 5.14983 5.18638 5.21995 5.28880 5.38346 5.42468 5.46619 5.57404 5.60494 5.64401 5.70253 5.77636 5.85432 6.05248 6.11304 6.68907 6.91320 7.28413 7.48756 8.86164 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012457 B = 0.003779 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.221180 B = 7408.081156 C = 8606.289695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.271 3.729 3 H -0.002 1.002 4 C -0.546 4.546 5 H 0.071 0.929 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.973 3.027 9 H -0.260 1.260 10 H -0.277 1.277 11 H -0.282 1.282 12 N -0.695 5.695 13 C 0.538 3.462 14 O -0.601 6.601 15 C -0.140 4.140 16 C -0.049 4.049 17 C -0.110 4.110 18 C -0.115 4.115 19 C -0.074 4.074 20 C -0.028 4.028 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.138 4.138 24 C -0.117 4.117 25 C -0.124 4.124 26 C -0.133 4.133 27 C -0.132 4.132 28 H 0.068 0.932 29 H 0.038 0.962 30 H 0.007 0.993 31 H 0.266 0.734 32 H 0.401 0.599 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.046 0.954 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.047 0.953 42 H 0.071 0.929 43 H 0.056 0.944 44 H 0.120 0.880 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.127 0.873 48 H 0.143 0.857 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.153 -16.534 19.225 25.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.168 3.832 3 H 0.016 0.984 4 C -0.584 4.584 5 H 0.089 0.911 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.798 3.202 9 H -0.184 1.184 10 H -0.203 1.203 11 H -0.208 1.208 12 N -0.341 5.341 13 C 0.325 3.675 14 O -0.483 6.483 15 C -0.143 4.143 16 C -0.049 4.049 17 C -0.127 4.127 18 C -0.132 4.132 19 C -0.074 4.074 20 C -0.028 4.028 21 C -0.197 4.197 22 C -0.199 4.199 23 C -0.195 4.195 24 C -0.135 4.135 25 C -0.143 4.143 26 C -0.170 4.170 27 C -0.168 4.168 28 H 0.087 0.913 29 H 0.057 0.943 30 H 0.026 0.974 31 H 0.075 0.925 32 H 0.235 0.765 33 H 0.169 0.831 34 H 0.172 0.828 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.065 0.935 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.066 0.934 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.138 0.862 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.145 0.855 48 H 0.161 0.839 49 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.096 -15.582 19.075 24.630 hybrid contribution -0.155 0.355 -1.479 1.529 sum -0.251 -15.227 17.596 23.271 Atomic orbital electron populations 1.21864 0.98294 0.99235 0.99341 1.18361 0.91021 0.91905 0.81959 0.98414 1.21529 1.32688 1.13404 0.90789 0.91122 1.25812 0.94830 0.95538 1.02322 1.70064 1.37028 1.23886 1.24599 0.85276 0.78162 0.78522 0.78264 1.18401 1.20282 1.20760 1.46185 1.64516 1.13956 1.09487 1.20032 0.76102 0.86534 0.84864 1.90614 1.53865 1.17043 1.86815 1.20139 0.97780 1.00759 0.95626 1.18716 0.92148 0.94069 0.99989 1.21234 1.01226 0.92160 0.98108 1.21430 0.92501 0.99262 1.00056 1.20071 0.94876 0.95039 0.97377 1.19543 0.94434 0.92874 0.95994 1.21907 1.00406 1.00869 0.96561 1.21953 1.00089 0.97481 1.00328 1.21884 0.97738 1.01202 0.98657 1.20969 0.99582 0.93692 0.99244 1.20886 0.94032 0.98745 1.00606 1.23106 1.00471 0.97656 0.95764 1.23318 0.88674 1.02753 1.02092 0.91314 0.94310 0.97378 0.92487 0.76464 0.83089 0.82771 0.92979 0.90883 0.93473 0.91588 0.91301 0.91955 0.93354 0.90964 0.92532 0.86168 0.89683 0.89450 0.85473 0.83900 0.88720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.82 9.26 71.98 0.67 -6.16 16 2 C 0.27 14.73 2.60 44.24 0.12 14.85 16 3 H 0.00 -0.13 7.50 -2.39 -0.02 -0.15 16 4 C -0.55 -29.92 8.73 25.60 0.22 -29.70 16 5 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 6 C 0.01 0.82 5.31 84.65 0.45 1.27 16 7 N -0.92 -53.69 11.33 21.45 0.24 -53.45 16 8 Si 0.97 42.80 29.54 68.60 2.03 44.82 16 9 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 10 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 11 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 12 N -0.69 -31.23 5.05 -446.10 -2.25 -33.48 16 13 C 0.54 23.37 5.99 87.65 0.52 23.90 16 14 O -0.60 -31.70 16.15 -3.03 -0.05 -31.75 16 15 C -0.14 -4.37 2.37 -53.68 -0.13 -4.50 16 16 C -0.05 -1.37 5.45 -19.86 -0.11 -1.48 16 17 C -0.11 -2.28 9.38 22.27 0.21 -2.07 16 18 C -0.11 -2.14 8.98 22.27 0.20 -1.94 16 19 C -0.07 -1.54 4.76 -19.86 -0.09 -1.63 16 20 C -0.03 -0.45 0.85 -52.93 -0.05 -0.50 16 21 C -0.14 -2.32 8.29 71.98 0.60 -1.72 16 22 C -0.14 -1.64 7.13 71.98 0.51 -1.12 16 23 C -0.14 -2.03 8.29 71.98 0.60 -1.44 16 24 C -0.12 -3.07 8.71 22.27 0.19 -2.88 16 25 C -0.12 -3.94 9.32 22.27 0.21 -3.73 16 26 C -0.13 -3.47 9.73 30.62 0.30 -3.17 16 27 C -0.13 -3.04 9.58 30.62 0.29 -2.75 16 28 H 0.07 3.95 6.08 -2.39 -0.01 3.93 16 29 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.27 14.63 8.31 -92.70 -0.77 13.86 16 32 H 0.40 16.08 8.54 -92.71 -0.79 15.29 16 33 H 0.15 2.21 5.93 -2.91 -0.02 2.20 16 34 H 0.15 1.96 5.90 -2.91 -0.02 1.94 16 35 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.05 0.88 7.39 -2.39 -0.02 0.86 16 38 H 0.07 0.68 7.51 -2.39 -0.02 0.66 16 39 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.06 0.70 7.51 -2.39 -0.02 0.69 16 41 H 0.05 0.80 7.39 -2.39 -0.02 0.79 16 42 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.12 3.00 7.10 -2.91 -0.02 2.98 16 45 H 0.08 3.25 7.39 -2.91 -0.02 3.23 16 46 H 0.09 2.65 7.86 -2.39 -0.02 2.63 16 47 H 0.13 2.59 8.14 -2.39 -0.02 2.58 16 48 H 0.14 2.17 6.08 -2.39 -0.01 2.16 16 49 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -70.36 389.63 4.83 -65.53 By element: Atomic # 1 Polarization: 32.94 SS G_CDS: 0.15 Total: 33.09 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: 4.71 Total: -24.77 kcal Atomic # 7 Polarization: -84.92 SS G_CDS: -2.01 Total: -86.93 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -0.05 Total: -31.75 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -70.36 4.83 -65.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321756786.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.905 kcal (2) G-P(sol) polarization free energy of solvation -70.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds