Wall clock time and date at job start Tue Mar 31 2020 11:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47581 * 2 1 4 4 C 1.50701 * 109.47095 * 119.99945 * 2 1 3 5 5 H 1.08008 * 120.00011 * 120.00069 * 4 2 1 6 6 C 1.37877 * 120.00123 * 299.99817 * 4 2 1 7 7 N 1.31510 * 119.99714 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99865 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47053 * 90.00341 * 8 6 4 10 10 H 1.48499 * 109.47039 * 209.99913 * 8 6 4 11 11 H 1.48498 * 109.47234 * 330.00039 * 8 6 4 12 12 N 1.46504 * 109.46933 * 239.99715 * 2 1 3 13 13 C 1.34777 * 119.99745 * 85.00250 * 12 2 1 14 14 O 1.21279 * 120.00052 * 5.19592 * 13 12 2 15 15 C 1.50699 * 119.99500 * 185.19559 * 13 12 2 16 16 C 1.50702 * 115.55309 * 65.70065 * 15 13 12 17 17 C 1.38236 * 119.99741 * 30.08169 * 16 15 13 18 18 C 1.38234 * 119.99381 * 179.97438 * 17 16 15 19 19 C 1.38236 * 120.00301 * 359.97438 * 18 17 16 20 20 C 1.50705 * 119.99755 * 179.97438 * 19 18 17 21 21 C 1.53003 * 109.46938 * 60.00216 * 20 19 18 22 22 C 1.53000 * 109.47429 * 300.00122 * 20 19 18 23 23 C 1.53003 * 109.46917 * 179.97438 * 20 19 18 24 24 C 1.38235 * 119.99890 * 0.27484 * 19 18 17 25 25 C 1.38231 * 120.00146 * 359.51650 * 24 19 18 26 26 C 1.53004 * 117.49333 * 211.36449 * 15 13 12 27 27 C 1.53004 * 117.49768 * 280.02093 * 15 13 12 28 28 H 1.08996 * 109.47071 * 59.99857 * 1 2 3 29 29 H 1.09002 * 109.47097 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46696 * 299.99708 * 1 2 3 31 31 H 0.97000 * 119.99861 * 179.97438 * 7 6 4 32 32 H 0.97003 * 119.99938 * 265.00287 * 12 2 1 33 33 H 1.07992 * 120.00002 * 359.97438 * 17 16 15 34 34 H 1.08004 * 119.99816 * 180.02562 * 18 17 16 35 35 H 1.08996 * 109.47373 * 299.99567 * 21 20 19 36 36 H 1.09006 * 109.46914 * 59.99553 * 21 20 19 37 37 H 1.08998 * 109.47205 * 179.97438 * 21 20 19 38 38 H 1.08998 * 109.46824 * 180.02562 * 22 20 19 39 39 H 1.09002 * 109.46773 * 300.00154 * 22 20 19 40 40 H 1.09004 * 109.46967 * 60.00007 * 22 20 19 41 41 H 1.08996 * 109.47291 * 300.00560 * 23 20 19 42 42 H 1.09002 * 109.46672 * 60.00542 * 23 20 19 43 43 H 1.08999 * 109.47156 * 179.97438 * 23 20 19 44 44 H 1.08003 * 119.99618 * 179.73117 * 24 19 18 45 45 H 1.07997 * 120.00265 * 180.27885 * 25 24 19 46 46 H 1.08999 * 117.49879 * 215.00616 * 26 15 13 47 47 H 1.08996 * 117.50310 * 0.02562 * 26 15 13 48 48 H 1.08994 * 117.50079 * 359.97438 * 27 15 13 49 49 H 1.09006 * 117.49214 * 145.00340 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9437 0.8302 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6298 -0.5459 4.4124 10 1 1.3432 -0.9492 5.1120 11 1 2.4858 -2.5662 3.7119 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0183 -2.3572 14 8 1.9494 1.1778 -2.3903 15 6 2.5365 -0.7529 -3.6140 16 6 1.5303 -1.7541 -4.1201 17 6 0.1816 -1.5544 -3.8916 18 6 -0.7414 -2.4725 -4.3564 19 6 -0.3159 -3.5900 -5.0500 20 6 -1.3222 -4.5911 -5.5561 21 6 -2.2864 -3.9008 -6.5230 22 6 -2.1080 -5.1658 -4.3758 23 6 -0.5939 -5.7228 -6.2841 24 6 1.0332 -3.7922 -5.2740 25 6 1.9559 -2.8720 -4.8130 26 6 3.3559 0.0130 -4.6547 27 6 4.0183 -1.0791 -3.8112 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 0.7090 1.1614 3.4844 32 1 2.2490 -1.6319 -1.1526 33 1 -0.1508 -0.6812 -3.3501 34 1 -1.7951 -2.3163 -4.1782 35 1 -2.8052 -3.0944 -6.0049 36 1 -1.7265 -3.4914 -7.3639 37 1 -3.0139 -4.6250 -6.8894 38 1 -2.8355 -5.8902 -4.7419 39 1 -1.4210 -5.6575 -3.6870 40 1 -2.6268 -4.3593 -3.8576 41 1 -0.0344 -5.3131 -7.1250 42 1 0.0932 -6.2146 -5.5955 43 1 -1.3217 -6.4472 -6.6498 44 1 1.3659 -4.6675 -5.8122 45 1 3.0095 -3.0277 -4.9919 46 1 3.1671 -0.2072 -5.7054 47 1 3.6135 1.0480 -4.4301 48 1 4.7115 -0.7620 -3.0321 49 1 4.2653 -2.0180 -4.3069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321756791.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:17 Heat of formation + Delta-G solvation = -7.815062 kcal Electronic energy + Delta-G solvation = -26690.761693 eV Core-core repulsion = 23196.647659 eV Total energy + Delta-G solvation = -3494.114034 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -40.38339 -39.09279 -37.04980 -35.47616 -34.62718 -32.31210 -31.08244 -29.76173 -28.89778 -27.55170 -27.40255 -25.27391 -24.59141 -22.78326 -22.52517 -21.67011 -20.39171 -19.38872 -18.93839 -17.60570 -16.44292 -15.77545 -15.29350 -15.22044 -14.96970 -14.63133 -14.45083 -14.35536 -13.80126 -13.71358 -13.37094 -13.27152 -12.89603 -12.82151 -12.41267 -12.27397 -12.20111 -11.97868 -11.86506 -11.67604 -11.51960 -11.34367 -11.18565 -11.07621 -10.97284 -10.81636 -10.79944 -10.58800 -10.44485 -10.31707 -10.26451 -10.19443 -9.03981 -9.00377 -8.81548 -8.53756 -8.31242 -7.87140 -6.11239 -4.20081 1.36450 1.50803 3.24822 3.26279 3.31800 3.33975 3.65201 3.94362 4.20557 4.38495 4.43919 4.59290 4.65964 4.82520 4.97431 5.01494 5.09591 5.12986 5.20913 5.22228 5.35723 5.41054 5.44519 5.49027 5.57490 5.65511 5.67278 5.70478 5.74173 5.80882 5.88667 5.90402 5.96252 6.09462 6.13182 6.14310 6.15470 6.22305 6.55687 6.68175 6.72537 6.83426 6.96165 7.07591 7.15523 7.47247 7.58735 7.71555 7.92625 8.15895 8.70149 8.79877 9.14872 9.47500 10.94862 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013141 B = 0.003633 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.290497 B = 7705.362811 C = 8771.259388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.264 3.736 3 H 0.049 0.951 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.699 5.699 13 C 0.541 3.459 14 O -0.551 6.551 15 C -0.121 4.121 16 C -0.037 4.037 17 C -0.098 4.098 18 C -0.109 4.109 19 C -0.077 4.077 20 C -0.029 4.029 21 C -0.138 4.138 22 C -0.140 4.140 23 C -0.143 4.143 24 C -0.121 4.121 25 C -0.117 4.117 26 C -0.137 4.137 27 C -0.160 4.160 28 H 0.012 0.988 29 H 0.027 0.973 30 H 0.090 0.910 31 H 0.264 0.736 32 H 0.390 0.610 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.099 0.901 47 H 0.106 0.894 48 H 0.103 0.897 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.707 -12.085 -18.146 21.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.346 5.346 13 C 0.325 3.675 14 O -0.430 6.430 15 C -0.124 4.124 16 C -0.038 4.038 17 C -0.116 4.116 18 C -0.127 4.127 19 C -0.077 4.077 20 C -0.029 4.029 21 C -0.195 4.195 22 C -0.197 4.197 23 C -0.200 4.200 24 C -0.139 4.139 25 C -0.135 4.135 26 C -0.175 4.175 27 C -0.197 4.197 28 H 0.031 0.969 29 H 0.046 0.954 30 H 0.109 0.891 31 H 0.074 0.926 32 H 0.222 0.778 33 H 0.141 0.859 34 H 0.138 0.862 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.118 0.882 47 H 0.124 0.876 48 H 0.121 0.879 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.976 -11.101 -17.971 21.216 hybrid contribution 0.356 -0.865 1.010 1.376 sum -1.620 -11.966 -16.961 20.820 Atomic orbital electron populations 1.22073 0.98461 0.99125 1.00743 1.18756 0.90949 0.94045 0.80038 0.93329 1.21214 1.32352 1.13164 0.90312 0.92107 1.24879 0.94813 0.94962 0.99023 1.69902 1.35918 1.22494 1.23839 0.86458 0.78603 0.79881 0.82219 1.20565 1.21069 1.19837 1.46447 1.64364 1.13638 1.10114 1.19163 0.77816 0.86914 0.83650 1.90653 1.51889 1.14638 1.85854 1.20320 0.92873 1.01315 0.97926 1.18770 0.92763 0.94078 0.98152 1.21040 0.92330 0.99327 0.98902 1.20912 0.99437 0.94078 0.98294 1.19759 0.93857 0.95527 0.98520 1.19481 0.94095 0.93752 0.95539 1.21889 0.98497 1.00327 0.98829 1.21900 0.99665 1.00875 0.97237 1.21954 1.00314 0.97574 1.00159 1.21045 0.92446 0.99392 1.00978 1.20973 0.99594 0.93992 0.98902 1.23007 1.00673 0.98002 0.95769 1.23161 0.92700 1.00524 1.03316 0.96900 0.95400 0.89119 0.92602 0.77790 0.85936 0.86216 0.92338 0.92566 0.92512 0.92525 0.92360 0.92254 0.92345 0.92231 0.92541 0.85811 0.85961 0.88248 0.87563 0.87902 0.87867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.26 37.16 0.34 -3.31 16 2 C 0.26 6.81 2.60 -69.08 -0.18 6.63 16 3 H 0.05 1.45 7.51 -51.93 -0.39 1.06 16 4 C -0.53 -14.29 8.73 -34.44 -0.30 -14.59 16 5 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -25.08 11.32 55.43 0.63 -24.46 16 8 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 12 N -0.70 -15.08 5.07 -54.93 -0.28 -15.36 16 13 C 0.54 11.20 5.88 -10.99 -0.06 11.14 16 14 O -0.55 -13.59 16.33 5.56 0.09 -13.50 16 15 C -0.12 -1.91 2.36 -156.81 -0.37 -2.28 16 16 C -0.04 -0.54 5.48 -104.62 -0.57 -1.12 16 17 C -0.10 -1.51 9.32 -39.58 -0.37 -1.88 16 18 C -0.11 -1.44 8.71 -39.58 -0.34 -1.78 16 19 C -0.08 -0.88 4.76 -104.62 -0.50 -1.38 16 20 C -0.03 -0.26 0.85 -155.66 -0.13 -0.40 16 21 C -0.14 -1.16 8.29 37.16 0.31 -0.86 16 22 C -0.14 -1.27 8.29 37.16 0.31 -0.96 16 23 C -0.14 -1.10 7.13 37.16 0.27 -0.84 16 24 C -0.12 -1.35 8.98 -39.59 -0.36 -1.70 16 25 C -0.12 -1.42 9.36 -39.58 -0.37 -1.79 16 26 C -0.14 -1.87 9.73 -26.69 -0.26 -2.13 16 27 C -0.16 -2.04 9.57 -26.69 -0.26 -2.29 16 28 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.39 7.64 8.54 -40.82 -0.35 7.30 16 33 H 0.12 2.16 7.34 -52.49 -0.39 1.77 16 34 H 0.12 1.43 7.10 -52.48 -0.37 1.06 16 35 H 0.06 0.51 7.39 -51.93 -0.38 0.13 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.57 7.39 -51.93 -0.38 0.18 16 41 H 0.06 0.43 7.53 -51.93 -0.39 0.04 16 42 H 0.06 0.46 7.50 -51.93 -0.39 0.07 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.12 1.11 5.90 -52.48 -0.31 0.80 16 45 H 0.12 1.24 5.95 -52.49 -0.31 0.92 16 46 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.11 1.57 8.00 -51.93 -0.42 1.15 16 48 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 49 H 0.10 1.05 6.10 -51.93 -0.32 0.73 16 LS Contribution 389.84 15.07 5.87 5.87 Total: -1.00 -30.53 389.84 -9.71 -40.24 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -8.06 Total: 9.22 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: -2.94 Total: -17.84 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.35 Total: -39.81 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.09 Total: -13.50 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.53 -9.71 -40.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321756791.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.421 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds