Wall clock time and date at job start Tue Mar 31 2020 11:27:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08992 * 109.47581 * 2 1
4 4 C 1.50701 * 109.47095 * 119.99945 * 2 1 3
5 5 H 1.08008 * 120.00011 * 120.00069 * 4 2 1
6 6 C 1.37877 * 120.00123 * 299.99817 * 4 2 1
7 7 N 1.31510 * 119.99714 * 359.97438 * 6 4 2
8 8 Si 1.86801 * 119.99865 * 179.97438 * 6 4 2
9 9 H 1.48508 * 109.47053 * 90.00341 * 8 6 4
10 10 H 1.48499 * 109.47039 * 209.99913 * 8 6 4
11 11 H 1.48498 * 109.47234 * 330.00039 * 8 6 4
12 12 N 1.46504 * 109.46933 * 239.99715 * 2 1 3
13 13 C 1.34777 * 119.99745 * 85.00250 * 12 2 1
14 14 O 1.21279 * 120.00052 * 5.19592 * 13 12 2
15 15 C 1.50699 * 119.99500 * 185.19559 * 13 12 2
16 16 C 1.50702 * 115.55309 * 65.70065 * 15 13 12
17 17 C 1.38236 * 119.99741 * 30.08169 * 16 15 13
18 18 C 1.38234 * 119.99381 * 179.97438 * 17 16 15
19 19 C 1.38236 * 120.00301 * 359.97438 * 18 17 16
20 20 C 1.50705 * 119.99755 * 179.97438 * 19 18 17
21 21 C 1.53003 * 109.46938 * 60.00216 * 20 19 18
22 22 C 1.53000 * 109.47429 * 300.00122 * 20 19 18
23 23 C 1.53003 * 109.46917 * 179.97438 * 20 19 18
24 24 C 1.38235 * 119.99890 * 0.27484 * 19 18 17
25 25 C 1.38231 * 120.00146 * 359.51650 * 24 19 18
26 26 C 1.53004 * 117.49333 * 211.36449 * 15 13 12
27 27 C 1.53004 * 117.49768 * 280.02093 * 15 13 12
28 28 H 1.08996 * 109.47071 * 59.99857 * 1 2 3
29 29 H 1.09002 * 109.47097 * 180.02562 * 1 2 3
30 30 H 1.08997 * 109.46696 * 299.99708 * 1 2 3
31 31 H 0.97000 * 119.99861 * 179.97438 * 7 6 4
32 32 H 0.97003 * 119.99938 * 265.00287 * 12 2 1
33 33 H 1.07992 * 120.00002 * 359.97438 * 17 16 15
34 34 H 1.08004 * 119.99816 * 180.02562 * 18 17 16
35 35 H 1.08996 * 109.47373 * 299.99567 * 21 20 19
36 36 H 1.09006 * 109.46914 * 59.99553 * 21 20 19
37 37 H 1.08998 * 109.47205 * 179.97438 * 21 20 19
38 38 H 1.08998 * 109.46824 * 180.02562 * 22 20 19
39 39 H 1.09002 * 109.46773 * 300.00154 * 22 20 19
40 40 H 1.09004 * 109.46967 * 60.00007 * 22 20 19
41 41 H 1.08996 * 109.47291 * 300.00560 * 23 20 19
42 42 H 1.09002 * 109.46672 * 60.00542 * 23 20 19
43 43 H 1.08999 * 109.47156 * 179.97438 * 23 20 19
44 44 H 1.08003 * 119.99618 * 179.73117 * 24 19 18
45 45 H 1.07997 * 120.00265 * 180.27885 * 25 24 19
46 46 H 1.08999 * 117.49879 * 215.00616 * 26 15 13
47 47 H 1.08996 * 117.50310 * 0.02562 * 26 15 13
48 48 H 1.08994 * 117.50079 * 359.97438 * 27 15 13
49 49 H 1.09006 * 117.49214 * 145.00340 * 27 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7104 1.2305
5 1 2.6533 -1.5886 1.1314
6 6 1.6993 -0.2393 2.4828
7 7 0.9437 0.8302 2.6034
8 14 2.3214 -1.1204 4.0079
9 1 3.6298 -0.5459 4.4124
10 1 1.3432 -0.9492 5.1120
11 1 2.4858 -2.5662 3.7119
12 7 2.0183 -0.6907 -1.1962
13 6 2.1470 -0.0183 -2.3572
14 8 1.9494 1.1778 -2.3903
15 6 2.5365 -0.7529 -3.6140
16 6 1.5303 -1.7541 -4.1201
17 6 0.1816 -1.5544 -3.8916
18 6 -0.7414 -2.4725 -4.3564
19 6 -0.3159 -3.5900 -5.0500
20 6 -1.3222 -4.5911 -5.5561
21 6 -2.2864 -3.9008 -6.5230
22 6 -2.1080 -5.1658 -4.3758
23 6 -0.5939 -5.7228 -6.2841
24 6 1.0332 -3.7922 -5.2740
25 6 1.9559 -2.8720 -4.8130
26 6 3.3559 0.0130 -4.6547
27 6 4.0183 -1.0791 -3.8112
28 1 -0.3633 0.5138 -0.8899
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3632 0.5138 0.8900
31 1 0.7090 1.1614 3.4844
32 1 2.2490 -1.6319 -1.1526
33 1 -0.1508 -0.6812 -3.3501
34 1 -1.7951 -2.3163 -4.1782
35 1 -2.8052 -3.0944 -6.0049
36 1 -1.7265 -3.4914 -7.3639
37 1 -3.0139 -4.6250 -6.8894
38 1 -2.8355 -5.8902 -4.7419
39 1 -1.4210 -5.6575 -3.6870
40 1 -2.6268 -4.3593 -3.8576
41 1 -0.0344 -5.3131 -7.1250
42 1 0.0932 -6.2146 -5.5955
43 1 -1.3217 -6.4472 -6.6498
44 1 1.3659 -4.6675 -5.8122
45 1 3.0095 -3.0277 -4.9919
46 1 3.1671 -0.2072 -5.7054
47 1 3.6135 1.0480 -4.4301
48 1 4.7115 -0.7620 -3.0321
49 1 4.2653 -2.0180 -4.3069
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001321756791.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:27:17
Heat of formation + Delta-G solvation = -7.815062 kcal
Electronic energy + Delta-G solvation = -26690.761693 eV
Core-core repulsion = 23196.647659 eV
Total energy + Delta-G solvation = -3494.114034 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 2.36 seconds
Orbital eigenvalues (eV)
-40.38339 -39.09279 -37.04980 -35.47616 -34.62718 -32.31210 -31.08244 -29.76173
-28.89778 -27.55170 -27.40255 -25.27391 -24.59141 -22.78326 -22.52517 -21.67011
-20.39171 -19.38872 -18.93839 -17.60570 -16.44292 -15.77545 -15.29350 -15.22044
-14.96970 -14.63133 -14.45083 -14.35536 -13.80126 -13.71358 -13.37094 -13.27152
-12.89603 -12.82151 -12.41267 -12.27397 -12.20111 -11.97868 -11.86506 -11.67604
-11.51960 -11.34367 -11.18565 -11.07621 -10.97284 -10.81636 -10.79944 -10.58800
-10.44485 -10.31707 -10.26451 -10.19443 -9.03981 -9.00377 -8.81548 -8.53756
-8.31242 -7.87140 -6.11239 -4.20081 1.36450 1.50803 3.24822 3.26279
3.31800 3.33975 3.65201 3.94362 4.20557 4.38495 4.43919 4.59290
4.65964 4.82520 4.97431 5.01494 5.09591 5.12986 5.20913 5.22228
5.35723 5.41054 5.44519 5.49027 5.57490 5.65511 5.67278 5.70478
5.74173 5.80882 5.88667 5.90402 5.96252 6.09462 6.13182 6.14310
6.15470 6.22305 6.55687 6.68175 6.72537 6.83426 6.96165 7.07591
7.15523 7.47247 7.58735 7.71555 7.92625 8.15895 8.70149 8.79877
9.14872 9.47500 10.94862
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.013141 B = 0.003633 C = 0.003191
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2130.290497 B = 7705.362811 C = 8771.259388
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.264 3.736
3 H 0.049 0.951
4 C -0.532 4.532
5 H 0.061 0.939
6 C 0.066 3.934
7 N -0.884 5.884
8 Si 0.901 3.099
9 H -0.280 1.280
10 H -0.285 1.285
11 H -0.274 1.274
12 N -0.699 5.699
13 C 0.541 3.459
14 O -0.551 6.551
15 C -0.121 4.121
16 C -0.037 4.037
17 C -0.098 4.098
18 C -0.109 4.109
19 C -0.077 4.077
20 C -0.029 4.029
21 C -0.138 4.138
22 C -0.140 4.140
23 C -0.143 4.143
24 C -0.121 4.121
25 C -0.117 4.117
26 C -0.137 4.137
27 C -0.160 4.160
28 H 0.012 0.988
29 H 0.027 0.973
30 H 0.090 0.910
31 H 0.264 0.736
32 H 0.390 0.610
33 H 0.123 0.877
34 H 0.120 0.880
35 H 0.058 0.942
36 H 0.055 0.945
37 H 0.056 0.944
38 H 0.056 0.944
39 H 0.057 0.943
40 H 0.058 0.942
41 H 0.058 0.942
42 H 0.059 0.941
43 H 0.056 0.944
44 H 0.124 0.876
45 H 0.123 0.877
46 H 0.099 0.901
47 H 0.106 0.894
48 H 0.103 0.897
49 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.707 -12.085 -18.146 21.869
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C 0.162 3.838
3 H 0.067 0.933
4 C -0.570 4.570
5 H 0.079 0.921
6 C -0.137 4.137
7 N -0.522 5.522
8 Si 0.728 3.272
9 H -0.206 1.206
10 H -0.211 1.211
11 H -0.198 1.198
12 N -0.346 5.346
13 C 0.325 3.675
14 O -0.430 6.430
15 C -0.124 4.124
16 C -0.038 4.038
17 C -0.116 4.116
18 C -0.127 4.127
19 C -0.077 4.077
20 C -0.029 4.029
21 C -0.195 4.195
22 C -0.197 4.197
23 C -0.200 4.200
24 C -0.139 4.139
25 C -0.135 4.135
26 C -0.175 4.175
27 C -0.197 4.197
28 H 0.031 0.969
29 H 0.046 0.954
30 H 0.109 0.891
31 H 0.074 0.926
32 H 0.222 0.778
33 H 0.141 0.859
34 H 0.138 0.862
35 H 0.077 0.923
36 H 0.074 0.926
37 H 0.075 0.925
38 H 0.075 0.925
39 H 0.076 0.924
40 H 0.077 0.923
41 H 0.077 0.923
42 H 0.078 0.922
43 H 0.075 0.925
44 H 0.142 0.858
45 H 0.140 0.860
46 H 0.118 0.882
47 H 0.124 0.876
48 H 0.121 0.879
49 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges -1.976 -11.101 -17.971 21.216
hybrid contribution 0.356 -0.865 1.010 1.376
sum -1.620 -11.966 -16.961 20.820
Atomic orbital electron populations
1.22073 0.98461 0.99125 1.00743 1.18756 0.90949 0.94045 0.80038
0.93329 1.21214 1.32352 1.13164 0.90312 0.92107 1.24879 0.94813
0.94962 0.99023 1.69902 1.35918 1.22494 1.23839 0.86458 0.78603
0.79881 0.82219 1.20565 1.21069 1.19837 1.46447 1.64364 1.13638
1.10114 1.19163 0.77816 0.86914 0.83650 1.90653 1.51889 1.14638
1.85854 1.20320 0.92873 1.01315 0.97926 1.18770 0.92763 0.94078
0.98152 1.21040 0.92330 0.99327 0.98902 1.20912 0.99437 0.94078
0.98294 1.19759 0.93857 0.95527 0.98520 1.19481 0.94095 0.93752
0.95539 1.21889 0.98497 1.00327 0.98829 1.21900 0.99665 1.00875
0.97237 1.21954 1.00314 0.97574 1.00159 1.21045 0.92446 0.99392
1.00978 1.20973 0.99594 0.93992 0.98902 1.23007 1.00673 0.98002
0.95769 1.23161 0.92700 1.00524 1.03316 0.96900 0.95400 0.89119
0.92602 0.77790 0.85936 0.86216 0.92338 0.92566 0.92512 0.92525
0.92360 0.92254 0.92345 0.92231 0.92541 0.85811 0.85961 0.88248
0.87563 0.87902 0.87867
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.65 9.26 37.16 0.34 -3.31 16
2 C 0.26 6.81 2.60 -69.08 -0.18 6.63 16
3 H 0.05 1.45 7.51 -51.93 -0.39 1.06 16
4 C -0.53 -14.29 8.73 -34.44 -0.30 -14.59 16
5 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16
6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16
7 N -0.88 -25.08 11.32 55.43 0.63 -24.46 16
8 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16
9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16
12 N -0.70 -15.08 5.07 -54.93 -0.28 -15.36 16
13 C 0.54 11.20 5.88 -10.99 -0.06 11.14 16
14 O -0.55 -13.59 16.33 5.56 0.09 -13.50 16
15 C -0.12 -1.91 2.36 -156.81 -0.37 -2.28 16
16 C -0.04 -0.54 5.48 -104.62 -0.57 -1.12 16
17 C -0.10 -1.51 9.32 -39.58 -0.37 -1.88 16
18 C -0.11 -1.44 8.71 -39.58 -0.34 -1.78 16
19 C -0.08 -0.88 4.76 -104.62 -0.50 -1.38 16
20 C -0.03 -0.26 0.85 -155.66 -0.13 -0.40 16
21 C -0.14 -1.16 8.29 37.16 0.31 -0.86 16
22 C -0.14 -1.27 8.29 37.16 0.31 -0.96 16
23 C -0.14 -1.10 7.13 37.16 0.27 -0.84 16
24 C -0.12 -1.35 8.98 -39.59 -0.36 -1.70 16
25 C -0.12 -1.42 9.36 -39.58 -0.37 -1.79 16
26 C -0.14 -1.87 9.73 -26.69 -0.26 -2.13 16
27 C -0.16 -2.04 9.57 -26.69 -0.26 -2.29 16
28 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16
29 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16
30 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16
31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16
32 H 0.39 7.64 8.54 -40.82 -0.35 7.30 16
33 H 0.12 2.16 7.34 -52.49 -0.39 1.77 16
34 H 0.12 1.43 7.10 -52.48 -0.37 1.06 16
35 H 0.06 0.51 7.39 -51.93 -0.38 0.13 16
36 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16
38 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16
39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
40 H 0.06 0.57 7.39 -51.93 -0.38 0.18 16
41 H 0.06 0.43 7.53 -51.93 -0.39 0.04 16
42 H 0.06 0.46 7.50 -51.93 -0.39 0.07 16
43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
44 H 0.12 1.11 5.90 -52.48 -0.31 0.80 16
45 H 0.12 1.24 5.95 -52.49 -0.31 0.92 16
46 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16
47 H 0.11 1.57 8.00 -51.93 -0.42 1.15 16
48 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16
49 H 0.10 1.05 6.10 -51.93 -0.32 0.73 16
LS Contribution 389.84 15.07 5.87 5.87
Total: -1.00 -30.53 389.84 -9.71 -40.24
By element:
Atomic # 1 Polarization: 17.28 SS G_CDS: -8.06 Total: 9.22 kcal
Atomic # 6 Polarization: -14.89 SS G_CDS: -2.94 Total: -17.84 kcal
Atomic # 7 Polarization: -40.16 SS G_CDS: 0.35 Total: -39.81 kcal
Atomic # 8 Polarization: -13.59 SS G_CDS: 0.09 Total: -13.50 kcal
Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal
Total LS contribution 5.87 Total: 5.87 kcal
Total: -30.53 -9.71 -40.24 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001321756791.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.421 kcal
(2) G-P(sol) polarization free energy of solvation -30.526 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.895 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.710 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.236 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.815 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.36 seconds