Wall clock time and date at job start Tue Mar 31 2020 11:27:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.08992 * 109.47581 * 2 1
4 4 C 1.50701 * 109.47095 * 119.99945 * 2 1 3
5 5 H 1.08008 * 120.00011 * 120.00069 * 4 2 1
6 6 C 1.37877 * 120.00123 * 299.99817 * 4 2 1
7 7 N 1.31510 * 119.99714 * 359.97438 * 6 4 2
8 8 Si 1.86801 * 119.99865 * 179.97438 * 6 4 2
9 9 H 1.48508 * 109.47053 * 90.00341 * 8 6 4
10 10 H 1.48499 * 109.47039 * 209.99913 * 8 6 4
11 11 H 1.48498 * 109.47234 * 330.00039 * 8 6 4
12 12 N 1.46504 * 109.46933 * 239.99715 * 2 1 3
13 13 C 1.34777 * 119.99745 * 85.00250 * 12 2 1
14 14 O 1.21279 * 120.00052 * 5.19592 * 13 12 2
15 15 C 1.50699 * 119.99500 * 185.19559 * 13 12 2
16 16 C 1.50702 * 115.55309 * 65.70065 * 15 13 12
17 17 C 1.38236 * 119.99741 * 30.08169 * 16 15 13
18 18 C 1.38234 * 119.99381 * 179.97438 * 17 16 15
19 19 C 1.38236 * 120.00301 * 359.97438 * 18 17 16
20 20 C 1.50705 * 119.99755 * 179.97438 * 19 18 17
21 21 C 1.53003 * 109.46938 * 60.00216 * 20 19 18
22 22 C 1.53000 * 109.47429 * 300.00122 * 20 19 18
23 23 C 1.53003 * 109.46917 * 179.97438 * 20 19 18
24 24 C 1.38235 * 119.99890 * 0.27484 * 19 18 17
25 25 C 1.38231 * 120.00146 * 359.51650 * 24 19 18
26 26 C 1.53004 * 117.49333 * 211.36449 * 15 13 12
27 27 C 1.53004 * 117.49768 * 280.02093 * 15 13 12
28 28 H 1.08996 * 109.47071 * 59.99857 * 1 2 3
29 29 H 1.09002 * 109.47097 * 180.02562 * 1 2 3
30 30 H 1.08997 * 109.46696 * 299.99708 * 1 2 3
31 31 H 0.97000 * 119.99861 * 179.97438 * 7 6 4
32 32 H 0.97003 * 119.99938 * 265.00287 * 12 2 1
33 33 H 1.07992 * 120.00002 * 359.97438 * 17 16 15
34 34 H 1.08004 * 119.99816 * 180.02562 * 18 17 16
35 35 H 1.08996 * 109.47373 * 299.99567 * 21 20 19
36 36 H 1.09006 * 109.46914 * 59.99553 * 21 20 19
37 37 H 1.08998 * 109.47205 * 179.97438 * 21 20 19
38 38 H 1.08998 * 109.46824 * 180.02562 * 22 20 19
39 39 H 1.09002 * 109.46773 * 300.00154 * 22 20 19
40 40 H 1.09004 * 109.46967 * 60.00007 * 22 20 19
41 41 H 1.08996 * 109.47291 * 300.00560 * 23 20 19
42 42 H 1.09002 * 109.46672 * 60.00542 * 23 20 19
43 43 H 1.08999 * 109.47156 * 179.97438 * 23 20 19
44 44 H 1.08003 * 119.99618 * 179.73117 * 24 19 18
45 45 H 1.07997 * 120.00265 * 180.27885 * 25 24 19
46 46 H 1.08999 * 117.49879 * 215.00616 * 26 15 13
47 47 H 1.08996 * 117.50310 * 0.02562 * 26 15 13
48 48 H 1.08994 * 117.50079 * 359.97438 * 27 15 13
49 49 H 1.09006 * 117.49214 * 145.00340 * 27 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0323 -0.7104 1.2305
5 1 2.6533 -1.5886 1.1314
6 6 1.6993 -0.2393 2.4828
7 7 0.9437 0.8302 2.6034
8 14 2.3214 -1.1204 4.0079
9 1 3.6298 -0.5459 4.4124
10 1 1.3432 -0.9492 5.1120
11 1 2.4858 -2.5662 3.7119
12 7 2.0183 -0.6907 -1.1962
13 6 2.1470 -0.0183 -2.3572
14 8 1.9494 1.1778 -2.3903
15 6 2.5365 -0.7529 -3.6140
16 6 1.5303 -1.7541 -4.1201
17 6 0.1816 -1.5544 -3.8916
18 6 -0.7414 -2.4725 -4.3564
19 6 -0.3159 -3.5900 -5.0500
20 6 -1.3222 -4.5911 -5.5561
21 6 -2.2864 -3.9008 -6.5230
22 6 -2.1080 -5.1658 -4.3758
23 6 -0.5939 -5.7228 -6.2841
24 6 1.0332 -3.7922 -5.2740
25 6 1.9559 -2.8720 -4.8130
26 6 3.3559 0.0130 -4.6547
27 6 4.0183 -1.0791 -3.8112
28 1 -0.3633 0.5138 -0.8899
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3632 0.5138 0.8900
31 1 0.7090 1.1614 3.4844
32 1 2.2490 -1.6319 -1.1526
33 1 -0.1508 -0.6812 -3.3501
34 1 -1.7951 -2.3163 -4.1782
35 1 -2.8052 -3.0944 -6.0049
36 1 -1.7265 -3.4914 -7.3639
37 1 -3.0139 -4.6250 -6.8894
38 1 -2.8355 -5.8902 -4.7419
39 1 -1.4210 -5.6575 -3.6870
40 1 -2.6268 -4.3593 -3.8576
41 1 -0.0344 -5.3131 -7.1250
42 1 0.0932 -6.2146 -5.5955
43 1 -1.3217 -6.4472 -6.6498
44 1 1.3659 -4.6675 -5.8122
45 1 3.0095 -3.0277 -4.9919
46 1 3.1671 -0.2072 -5.7054
47 1 3.6135 1.0480 -4.4301
48 1 4.7115 -0.7620 -3.0321
49 1 4.2653 -2.0180 -4.3069
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001321756791.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:27:13
Heat of formation + Delta-G solvation = -23.752866 kcal
Electronic energy + Delta-G solvation = -26691.452808 eV
Core-core repulsion = 23196.647659 eV
Total energy + Delta-G solvation = -3494.805149 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 2.50 seconds
Orbital eigenvalues (eV)
-41.57959 -40.36159 -38.29199 -36.81765 -36.23185 -34.31706 -32.05942 -31.02930
-30.58149 -28.20335 -28.08188 -27.39790 -25.89646 -23.90632 -23.71028 -22.74196
-22.11476 -20.83830 -20.02688 -19.03783 -17.97184 -17.22805 -17.15273 -16.34513
-16.22112 -15.86153 -15.65802 -15.34971 -15.10051 -14.84470 -14.59722 -14.46329
-14.33798 -13.99328 -13.77054 -13.73926 -13.17166 -13.09435 -13.00366 -12.92546
-12.82311 -12.71050 -12.51232 -12.45188 -12.31498 -12.27200 -12.16518 -11.88719
-11.73628 -11.50134 -11.41105 -11.30386 -11.15097 -10.72309 -10.59336 -9.83201
-9.77607 -9.31582 -8.20412 -6.38299 0.37360 0.50988 1.42714 1.43529
1.54546 1.66964 2.29947 2.51191 2.62349 3.05266 3.10120 3.48465
3.70643 3.79010 3.85871 3.95202 4.01338 4.11738 4.16571 4.28107
4.40841 4.47987 4.63702 4.67270 4.69726 4.76588 4.80374 4.83735
4.85666 4.93880 4.95110 5.00639 5.03673 5.06779 5.07650 5.14414
5.17977 5.21477 5.28545 5.37996 5.42113 5.46199 5.57105 5.60187
5.63855 5.69584 5.76937 5.85272 6.05072 6.10690 6.68672 6.91232
7.28377 7.48739 8.86222
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.013141 B = 0.003633 C = 0.003191
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2130.290497 B = 7705.362811 C = 8771.259388
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C 0.271 3.729
3 H -0.002 1.002
4 C -0.547 4.547
5 H 0.072 0.928
6 C 0.015 3.985
7 N -0.918 5.918
8 Si 0.974 3.026
9 H -0.276 1.276
10 H -0.282 1.282
11 H -0.260 1.260
12 N -0.695 5.695
13 C 0.539 3.461
14 O -0.601 6.601
15 C -0.140 4.140
16 C -0.047 4.047
17 C -0.127 4.127
18 C -0.117 4.117
19 C -0.074 4.074
20 C -0.029 4.029
21 C -0.138 4.138
22 C -0.140 4.140
23 C -0.141 4.141
24 C -0.115 4.115
25 C -0.110 4.110
26 C -0.134 4.134
27 C -0.133 4.133
28 H 0.007 0.993
29 H 0.038 0.962
30 H 0.068 0.932
31 H 0.266 0.734
32 H 0.402 0.598
33 H 0.083 0.917
34 H 0.120 0.880
35 H 0.047 0.953
36 H 0.055 0.945
37 H 0.072 0.928
38 H 0.073 0.927
39 H 0.051 0.949
40 H 0.046 0.954
41 H 0.065 0.935
42 H 0.062 0.938
43 H 0.068 0.932
44 H 0.155 0.845
45 H 0.153 0.847
46 H 0.127 0.873
47 H 0.086 0.914
48 H 0.096 0.904
49 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.347 -15.933 -19.824 25.436
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.188 4.188
2 C 0.168 3.832
3 H 0.016 0.984
4 C -0.585 4.585
5 H 0.090 0.910
6 C -0.185 4.185
7 N -0.556 5.556
8 Si 0.798 3.202
9 H -0.202 1.202
10 H -0.208 1.208
11 H -0.184 1.184
12 N -0.342 5.342
13 C 0.325 3.675
14 O -0.483 6.483
15 C -0.143 4.143
16 C -0.048 4.048
17 C -0.145 4.145
18 C -0.135 4.135
19 C -0.074 4.074
20 C -0.029 4.029
21 C -0.195 4.195
22 C -0.197 4.197
23 C -0.198 4.198
24 C -0.132 4.132
25 C -0.127 4.127
26 C -0.171 4.171
27 C -0.169 4.169
28 H 0.026 0.974
29 H 0.057 0.943
30 H 0.087 0.913
31 H 0.075 0.925
32 H 0.236 0.764
33 H 0.102 0.898
34 H 0.138 0.862
35 H 0.066 0.934
36 H 0.075 0.925
37 H 0.091 0.909
38 H 0.091 0.909
39 H 0.070 0.930
40 H 0.065 0.935
41 H 0.084 0.916
42 H 0.081 0.919
43 H 0.087 0.913
44 H 0.173 0.827
45 H 0.170 0.830
46 H 0.145 0.855
47 H 0.105 0.895
48 H 0.114 0.886
49 H 0.161 0.839
Dipole moment (debyes) X Y Z Total
from point charges -0.605 -14.981 -19.673 24.735
hybrid contribution -0.124 0.382 1.488 1.541
sum -0.729 -14.598 -18.185 23.331
Atomic orbital electron populations
1.21865 0.98336 0.99230 0.99342 1.18354 0.90997 0.91899 0.81966
0.98443 1.21512 1.32698 1.13552 0.90774 0.91026 1.25819 0.94782
0.95575 1.02349 1.70052 1.36925 1.23944 1.24678 0.85320 0.77857
0.79165 0.77861 1.20198 1.20774 1.18379 1.46202 1.64508 1.13982
1.09497 1.20033 0.76127 0.86511 0.84802 1.90615 1.53794 1.17155
1.86760 1.20123 0.95362 1.02756 0.96027 1.18709 0.91672 0.94915
0.99475 1.20888 0.93783 0.99177 1.00644 1.20967 0.99186 0.94545
0.98782 1.20073 0.95040 0.94997 0.97305 1.19548 0.93803 0.93785
0.95725 1.21886 0.98655 1.00422 0.98522 1.21908 0.99859 1.00810
0.97157 1.21952 1.00638 0.97051 1.00200 1.21437 0.91897 0.99850
1.00024 1.21232 1.01310 0.92557 0.97627 1.23111 0.99724 0.97419
0.96838 1.23343 0.89603 1.01632 1.02340 0.97405 0.94332 0.91288
0.92476 0.76394 0.89829 0.86181 0.93386 0.92540 0.90932 0.90851
0.92971 0.93490 0.91584 0.91934 0.91278 0.82702 0.82996 0.85478
0.89523 0.88572 0.83908
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -6.86 9.26 71.98 0.67 -6.20 16
2 C 0.27 14.75 2.60 44.25 0.12 14.87 16
3 H 0.00 -0.15 7.51 -2.39 -0.02 -0.17 16
4 C -0.55 -29.95 8.73 25.60 0.22 -29.72 16
5 H 0.07 3.68 7.74 -2.91 -0.02 3.65 16
6 C 0.01 0.81 5.30 84.66 0.45 1.26 16
7 N -0.92 -53.75 11.32 21.45 0.24 -53.51 16
8 Si 0.97 42.71 29.54 68.60 2.03 44.74 16
9 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16
10 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16
11 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16
12 N -0.69 -31.20 5.07 -446.10 -2.26 -33.46 16
13 C 0.54 23.42 5.88 87.66 0.52 23.93 16
14 O -0.60 -31.82 16.33 -3.03 -0.05 -31.87 16
15 C -0.14 -4.37 2.36 -53.67 -0.13 -4.49 16
16 C -0.05 -1.34 5.48 -19.86 -0.11 -1.45 16
17 C -0.13 -4.07 9.32 22.27 0.21 -3.86 16
18 C -0.12 -3.11 8.71 22.27 0.19 -2.91 16
19 C -0.07 -1.56 4.76 -19.86 -0.09 -1.65 16
20 C -0.03 -0.45 0.85 -52.92 -0.05 -0.50 16
21 C -0.14 -2.04 8.29 71.98 0.60 -1.45 16
22 C -0.14 -2.31 8.29 71.98 0.60 -1.71 16
23 C -0.14 -1.63 7.13 71.98 0.51 -1.11 16
24 C -0.11 -2.14 8.98 22.27 0.20 -1.94 16
25 C -0.11 -2.28 9.36 22.27 0.21 -2.07 16
26 C -0.13 -3.48 9.73 30.62 0.30 -3.18 16
27 C -0.13 -3.03 9.57 30.62 0.29 -2.74 16
28 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16
29 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16
30 H 0.07 3.97 6.07 -2.39 -0.01 3.96 16
31 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16
32 H 0.40 15.96 8.54 -92.71 -0.79 15.17 16
33 H 0.08 3.26 7.34 -2.91 -0.02 3.24 16
34 H 0.12 3.03 7.10 -2.91 -0.02 3.01 16
35 H 0.05 0.80 7.39 -2.39 -0.02 0.78 16
36 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16
37 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16
38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16
39 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16
40 H 0.05 0.87 7.39 -2.38 -0.02 0.86 16
41 H 0.07 0.68 7.53 -2.39 -0.02 0.66 16
42 H 0.06 0.70 7.50 -2.39 -0.02 0.68 16
43 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16
44 H 0.16 1.96 5.90 -2.91 -0.02 1.94 16
45 H 0.15 2.21 5.95 -2.91 -0.02 2.19 16
46 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16
47 H 0.09 2.60 8.00 -2.39 -0.02 2.58 16
48 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16
49 H 0.14 2.14 6.10 -2.38 -0.01 2.13 16
Total: -1.00 -70.73 389.84 4.81 -65.92
By element:
Atomic # 1 Polarization: 32.95 SS G_CDS: 0.15 Total: 33.10 kcal
Atomic # 6 Polarization: -29.63 SS G_CDS: 4.70 Total: -24.93 kcal
Atomic # 7 Polarization: -84.95 SS G_CDS: -2.02 Total: -86.97 kcal
Atomic # 8 Polarization: -31.82 SS G_CDS: -0.05 Total: -31.87 kcal
Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal
Total: -70.73 4.81 -65.92 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001321756791.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.165 kcal
(2) G-P(sol) polarization free energy of solvation -70.725 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.561 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.808 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.918 kcal
(6) G-S(sol) free energy of system = (1) + (5) -23.753 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 2.50 seconds