Wall clock time and date at job start Tue Mar 31 2020 11:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.47581 * 2 1 4 4 C 1.50701 * 109.47095 * 119.99945 * 2 1 3 5 5 H 1.08008 * 120.00011 * 120.00069 * 4 2 1 6 6 C 1.37877 * 120.00123 * 299.99817 * 4 2 1 7 7 N 1.31510 * 119.99714 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99865 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47053 * 90.00341 * 8 6 4 10 10 H 1.48499 * 109.47039 * 209.99913 * 8 6 4 11 11 H 1.48498 * 109.47234 * 330.00039 * 8 6 4 12 12 N 1.46504 * 109.46933 * 239.99715 * 2 1 3 13 13 C 1.34777 * 119.99745 * 85.00250 * 12 2 1 14 14 O 1.21279 * 120.00052 * 5.19592 * 13 12 2 15 15 C 1.50699 * 119.99500 * 185.19559 * 13 12 2 16 16 C 1.50702 * 115.55309 * 65.70065 * 15 13 12 17 17 C 1.38236 * 119.99741 * 30.08169 * 16 15 13 18 18 C 1.38234 * 119.99381 * 179.97438 * 17 16 15 19 19 C 1.38236 * 120.00301 * 359.97438 * 18 17 16 20 20 C 1.50705 * 119.99755 * 179.97438 * 19 18 17 21 21 C 1.53003 * 109.46938 * 60.00216 * 20 19 18 22 22 C 1.53000 * 109.47429 * 300.00122 * 20 19 18 23 23 C 1.53003 * 109.46917 * 179.97438 * 20 19 18 24 24 C 1.38235 * 119.99890 * 0.27484 * 19 18 17 25 25 C 1.38231 * 120.00146 * 359.51650 * 24 19 18 26 26 C 1.53004 * 117.49333 * 211.36449 * 15 13 12 27 27 C 1.53004 * 117.49768 * 280.02093 * 15 13 12 28 28 H 1.08996 * 109.47071 * 59.99857 * 1 2 3 29 29 H 1.09002 * 109.47097 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46696 * 299.99708 * 1 2 3 31 31 H 0.97000 * 119.99861 * 179.97438 * 7 6 4 32 32 H 0.97003 * 119.99938 * 265.00287 * 12 2 1 33 33 H 1.07992 * 120.00002 * 359.97438 * 17 16 15 34 34 H 1.08004 * 119.99816 * 180.02562 * 18 17 16 35 35 H 1.08996 * 109.47373 * 299.99567 * 21 20 19 36 36 H 1.09006 * 109.46914 * 59.99553 * 21 20 19 37 37 H 1.08998 * 109.47205 * 179.97438 * 21 20 19 38 38 H 1.08998 * 109.46824 * 180.02562 * 22 20 19 39 39 H 1.09002 * 109.46773 * 300.00154 * 22 20 19 40 40 H 1.09004 * 109.46967 * 60.00007 * 22 20 19 41 41 H 1.08996 * 109.47291 * 300.00560 * 23 20 19 42 42 H 1.09002 * 109.46672 * 60.00542 * 23 20 19 43 43 H 1.08999 * 109.47156 * 179.97438 * 23 20 19 44 44 H 1.08003 * 119.99618 * 179.73117 * 24 19 18 45 45 H 1.07997 * 120.00265 * 180.27885 * 25 24 19 46 46 H 1.08999 * 117.49879 * 215.00616 * 26 15 13 47 47 H 1.08996 * 117.50310 * 0.02562 * 26 15 13 48 48 H 1.08994 * 117.50079 * 359.97438 * 27 15 13 49 49 H 1.09006 * 117.49214 * 145.00340 * 27 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9437 0.8302 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6298 -0.5459 4.4124 10 1 1.3432 -0.9492 5.1120 11 1 2.4858 -2.5662 3.7119 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0183 -2.3572 14 8 1.9494 1.1778 -2.3903 15 6 2.5365 -0.7529 -3.6140 16 6 1.5303 -1.7541 -4.1201 17 6 0.1816 -1.5544 -3.8916 18 6 -0.7414 -2.4725 -4.3564 19 6 -0.3159 -3.5900 -5.0500 20 6 -1.3222 -4.5911 -5.5561 21 6 -2.2864 -3.9008 -6.5230 22 6 -2.1080 -5.1658 -4.3758 23 6 -0.5939 -5.7228 -6.2841 24 6 1.0332 -3.7922 -5.2740 25 6 1.9559 -2.8720 -4.8130 26 6 3.3559 0.0130 -4.6547 27 6 4.0183 -1.0791 -3.8112 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 0.7090 1.1614 3.4844 32 1 2.2490 -1.6319 -1.1526 33 1 -0.1508 -0.6812 -3.3501 34 1 -1.7951 -2.3163 -4.1782 35 1 -2.8052 -3.0944 -6.0049 36 1 -1.7265 -3.4914 -7.3639 37 1 -3.0139 -4.6250 -6.8894 38 1 -2.8355 -5.8902 -4.7419 39 1 -1.4210 -5.6575 -3.6870 40 1 -2.6268 -4.3593 -3.8576 41 1 -0.0344 -5.3131 -7.1250 42 1 0.0932 -6.2146 -5.5955 43 1 -1.3217 -6.4472 -6.6498 44 1 1.3659 -4.6675 -5.8122 45 1 3.0095 -3.0277 -4.9919 46 1 3.1671 -0.2072 -5.7054 47 1 3.6135 1.0480 -4.4301 48 1 4.7115 -0.7620 -3.0321 49 1 4.2653 -2.0180 -4.3069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321756791.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:13 Heat of formation + Delta-G solvation = -23.752866 kcal Electronic energy + Delta-G solvation = -26691.452808 eV Core-core repulsion = 23196.647659 eV Total energy + Delta-G solvation = -3494.805149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 2.50 seconds Orbital eigenvalues (eV) -41.57959 -40.36159 -38.29199 -36.81765 -36.23185 -34.31706 -32.05942 -31.02930 -30.58149 -28.20335 -28.08188 -27.39790 -25.89646 -23.90632 -23.71028 -22.74196 -22.11476 -20.83830 -20.02688 -19.03783 -17.97184 -17.22805 -17.15273 -16.34513 -16.22112 -15.86153 -15.65802 -15.34971 -15.10051 -14.84470 -14.59722 -14.46329 -14.33798 -13.99328 -13.77054 -13.73926 -13.17166 -13.09435 -13.00366 -12.92546 -12.82311 -12.71050 -12.51232 -12.45188 -12.31498 -12.27200 -12.16518 -11.88719 -11.73628 -11.50134 -11.41105 -11.30386 -11.15097 -10.72309 -10.59336 -9.83201 -9.77607 -9.31582 -8.20412 -6.38299 0.37360 0.50988 1.42714 1.43529 1.54546 1.66964 2.29947 2.51191 2.62349 3.05266 3.10120 3.48465 3.70643 3.79010 3.85871 3.95202 4.01338 4.11738 4.16571 4.28107 4.40841 4.47987 4.63702 4.67270 4.69726 4.76588 4.80374 4.83735 4.85666 4.93880 4.95110 5.00639 5.03673 5.06779 5.07650 5.14414 5.17977 5.21477 5.28545 5.37996 5.42113 5.46199 5.57105 5.60187 5.63855 5.69584 5.76937 5.85272 6.05072 6.10690 6.68672 6.91232 7.28377 7.48739 8.86222 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013141 B = 0.003633 C = 0.003191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.290497 B = 7705.362811 C = 8771.259388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.271 3.729 3 H -0.002 1.002 4 C -0.547 4.547 5 H 0.072 0.928 6 C 0.015 3.985 7 N -0.918 5.918 8 Si 0.974 3.026 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.260 1.260 12 N -0.695 5.695 13 C 0.539 3.461 14 O -0.601 6.601 15 C -0.140 4.140 16 C -0.047 4.047 17 C -0.127 4.127 18 C -0.117 4.117 19 C -0.074 4.074 20 C -0.029 4.029 21 C -0.138 4.138 22 C -0.140 4.140 23 C -0.141 4.141 24 C -0.115 4.115 25 C -0.110 4.110 26 C -0.134 4.134 27 C -0.133 4.133 28 H 0.007 0.993 29 H 0.038 0.962 30 H 0.068 0.932 31 H 0.266 0.734 32 H 0.402 0.598 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.047 0.953 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.051 0.949 40 H 0.046 0.954 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.155 0.845 45 H 0.153 0.847 46 H 0.127 0.873 47 H 0.086 0.914 48 H 0.096 0.904 49 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.347 -15.933 -19.824 25.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.168 3.832 3 H 0.016 0.984 4 C -0.585 4.585 5 H 0.090 0.910 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.798 3.202 9 H -0.202 1.202 10 H -0.208 1.208 11 H -0.184 1.184 12 N -0.342 5.342 13 C 0.325 3.675 14 O -0.483 6.483 15 C -0.143 4.143 16 C -0.048 4.048 17 C -0.145 4.145 18 C -0.135 4.135 19 C -0.074 4.074 20 C -0.029 4.029 21 C -0.195 4.195 22 C -0.197 4.197 23 C -0.198 4.198 24 C -0.132 4.132 25 C -0.127 4.127 26 C -0.171 4.171 27 C -0.169 4.169 28 H 0.026 0.974 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.236 0.764 33 H 0.102 0.898 34 H 0.138 0.862 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.173 0.827 45 H 0.170 0.830 46 H 0.145 0.855 47 H 0.105 0.895 48 H 0.114 0.886 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.605 -14.981 -19.673 24.735 hybrid contribution -0.124 0.382 1.488 1.541 sum -0.729 -14.598 -18.185 23.331 Atomic orbital electron populations 1.21865 0.98336 0.99230 0.99342 1.18354 0.90997 0.91899 0.81966 0.98443 1.21512 1.32698 1.13552 0.90774 0.91026 1.25819 0.94782 0.95575 1.02349 1.70052 1.36925 1.23944 1.24678 0.85320 0.77857 0.79165 0.77861 1.20198 1.20774 1.18379 1.46202 1.64508 1.13982 1.09497 1.20033 0.76127 0.86511 0.84802 1.90615 1.53794 1.17155 1.86760 1.20123 0.95362 1.02756 0.96027 1.18709 0.91672 0.94915 0.99475 1.20888 0.93783 0.99177 1.00644 1.20967 0.99186 0.94545 0.98782 1.20073 0.95040 0.94997 0.97305 1.19548 0.93803 0.93785 0.95725 1.21886 0.98655 1.00422 0.98522 1.21908 0.99859 1.00810 0.97157 1.21952 1.00638 0.97051 1.00200 1.21437 0.91897 0.99850 1.00024 1.21232 1.01310 0.92557 0.97627 1.23111 0.99724 0.97419 0.96838 1.23343 0.89603 1.01632 1.02340 0.97405 0.94332 0.91288 0.92476 0.76394 0.89829 0.86181 0.93386 0.92540 0.90932 0.90851 0.92971 0.93490 0.91584 0.91934 0.91278 0.82702 0.82996 0.85478 0.89523 0.88572 0.83908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.86 9.26 71.98 0.67 -6.20 16 2 C 0.27 14.75 2.60 44.25 0.12 14.87 16 3 H 0.00 -0.15 7.51 -2.39 -0.02 -0.17 16 4 C -0.55 -29.95 8.73 25.60 0.22 -29.72 16 5 H 0.07 3.68 7.74 -2.91 -0.02 3.65 16 6 C 0.01 0.81 5.30 84.66 0.45 1.26 16 7 N -0.92 -53.75 11.32 21.45 0.24 -53.51 16 8 Si 0.97 42.71 29.54 68.60 2.03 44.74 16 9 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 12 N -0.69 -31.20 5.07 -446.10 -2.26 -33.46 16 13 C 0.54 23.42 5.88 87.66 0.52 23.93 16 14 O -0.60 -31.82 16.33 -3.03 -0.05 -31.87 16 15 C -0.14 -4.37 2.36 -53.67 -0.13 -4.49 16 16 C -0.05 -1.34 5.48 -19.86 -0.11 -1.45 16 17 C -0.13 -4.07 9.32 22.27 0.21 -3.86 16 18 C -0.12 -3.11 8.71 22.27 0.19 -2.91 16 19 C -0.07 -1.56 4.76 -19.86 -0.09 -1.65 16 20 C -0.03 -0.45 0.85 -52.92 -0.05 -0.50 16 21 C -0.14 -2.04 8.29 71.98 0.60 -1.45 16 22 C -0.14 -2.31 8.29 71.98 0.60 -1.71 16 23 C -0.14 -1.63 7.13 71.98 0.51 -1.11 16 24 C -0.11 -2.14 8.98 22.27 0.20 -1.94 16 25 C -0.11 -2.28 9.36 22.27 0.21 -2.07 16 26 C -0.13 -3.48 9.73 30.62 0.30 -3.18 16 27 C -0.13 -3.03 9.57 30.62 0.29 -2.74 16 28 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.07 3.97 6.07 -2.39 -0.01 3.96 16 31 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 32 H 0.40 15.96 8.54 -92.71 -0.79 15.17 16 33 H 0.08 3.26 7.34 -2.91 -0.02 3.24 16 34 H 0.12 3.03 7.10 -2.91 -0.02 3.01 16 35 H 0.05 0.80 7.39 -2.39 -0.02 0.78 16 36 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 37 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.05 0.87 7.39 -2.38 -0.02 0.86 16 41 H 0.07 0.68 7.53 -2.39 -0.02 0.66 16 42 H 0.06 0.70 7.50 -2.39 -0.02 0.68 16 43 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.16 1.96 5.90 -2.91 -0.02 1.94 16 45 H 0.15 2.21 5.95 -2.91 -0.02 2.19 16 46 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 47 H 0.09 2.60 8.00 -2.39 -0.02 2.58 16 48 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 49 H 0.14 2.14 6.10 -2.38 -0.01 2.13 16 Total: -1.00 -70.73 389.84 4.81 -65.92 By element: Atomic # 1 Polarization: 32.95 SS G_CDS: 0.15 Total: 33.10 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 4.70 Total: -24.93 kcal Atomic # 7 Polarization: -84.95 SS G_CDS: -2.02 Total: -86.97 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -0.05 Total: -31.87 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -70.73 4.81 -65.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321756791.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.165 kcal (2) G-P(sol) polarization free energy of solvation -70.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.50 seconds