Wall clock time and date at job start Tue Mar 31 2020 10:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47441 * 2 1 4 4 C 1.52997 * 109.47307 * 239.99723 * 2 1 3 5 5 C 1.53006 * 109.47248 * 300.00372 * 4 2 1 6 6 C 1.52998 * 109.47113 * 299.99851 * 5 4 2 7 7 H 1.09000 * 109.46935 * 300.00130 * 6 5 4 8 8 N 1.46500 * 109.46934 * 180.02562 * 6 5 4 9 9 C 1.34770 * 120.00215 * 85.00345 * 8 6 5 10 10 O 1.21283 * 120.00045 * 359.97438 * 9 8 6 11 11 C 1.50702 * 120.00234 * 180.02562 * 9 8 6 12 12 H 1.09000 * 109.47020 * 59.99035 * 11 9 8 13 13 C 1.50706 * 109.46464 * 299.99606 * 11 9 8 14 14 H 1.07992 * 120.00138 * 335.01939 * 13 11 9 15 15 C 1.37875 * 119.99700 * 155.02315 * 13 11 9 16 16 N 1.31523 * 120.00102 * 355.28730 * 15 13 11 17 17 Si 1.86797 * 120.00046 * 175.28355 * 15 13 11 18 18 H 1.48502 * 109.47030 * 90.00185 * 17 15 13 19 19 H 1.48504 * 109.47053 * 330.00213 * 17 15 13 20 20 H 1.48504 * 109.47355 * 210.00214 * 17 15 13 21 21 C 1.50697 * 109.47332 * 179.97438 * 11 9 8 22 22 C 1.38232 * 120.00211 * 66.35079 * 21 11 9 23 23 C 1.38228 * 120.00040 * 179.79081 * 22 21 11 24 24 C 1.38240 * 119.99941 * 0.46074 * 23 22 21 25 25 C 1.38229 * 119.99734 * 359.76943 * 24 23 22 26 26 C 1.38230 * 119.99735 * 246.62618 * 21 11 9 27 27 C 1.52997 * 109.46942 * 59.99961 * 6 5 4 28 28 H 1.09003 * 109.47446 * 59.99857 * 27 6 5 29 29 C 1.52998 * 109.46942 * 179.97438 * 27 6 5 30 30 C 1.52998 * 109.47129 * 299.99776 * 27 6 5 31 31 H 1.09002 * 109.47284 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47353 * 300.00347 * 1 2 3 33 33 H 1.09008 * 109.46475 * 59.99972 * 1 2 3 34 34 H 1.09003 * 109.47446 * 180.02562 * 4 2 1 35 35 H 1.09003 * 109.47519 * 60.00488 * 4 2 1 36 36 H 1.09002 * 109.46856 * 179.97438 * 5 4 2 37 37 H 1.09005 * 109.46826 * 60.00249 * 5 4 2 38 38 H 0.97005 * 119.99560 * 264.99819 * 8 6 5 39 39 H 0.96996 * 119.99521 * 5.54736 * 16 15 13 40 40 H 1.08001 * 119.99539 * 359.97438 * 22 21 11 41 41 H 1.07999 * 120.00117 * 180.24933 * 23 22 21 42 42 H 1.07995 * 119.99744 * 179.79317 * 24 23 22 43 43 H 1.08001 * 119.99914 * 180.02562 * 25 24 23 44 44 H 1.08005 * 120.00447 * 359.97438 * 26 21 11 45 45 H 1.09005 * 109.47600 * 59.99963 * 29 27 6 46 46 H 1.09008 * 109.47214 * 179.97438 * 29 27 6 47 47 H 1.09006 * 109.47129 * 299.99662 * 29 27 6 48 48 H 1.09003 * 109.47542 * 299.99776 * 30 27 6 49 49 H 1.09008 * 109.47093 * 180.02562 * 30 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5300 -2.1638 -1.2492 6 6 2.0399 -2.8851 0.0001 7 1 3.1299 -2.8851 0.0001 8 7 1.5520 -4.2665 -0.0003 9 6 2.2293 -5.2202 -0.6697 10 8 3.2424 -4.9348 -1.2722 11 6 1.7271 -6.6411 -0.6705 12 1 0.7281 -6.6730 -1.1053 13 6 1.6757 -7.1564 0.7447 14 1 2.3177 -6.7268 1.4995 15 6 0.8091 -8.1763 1.0759 16 7 -0.0377 -8.6365 0.1809 17 14 0.8376 -8.9047 2.7958 18 1 -0.1046 -8.1562 3.6660 19 1 2.2108 -8.8057 3.3526 20 1 0.4294 -10.3313 2.7361 21 6 2.6571 -7.5021 -1.4857 22 6 3.9511 -7.7239 -1.0529 23 6 4.8028 -8.5173 -1.7985 24 6 4.3636 -9.0811 -2.9818 25 6 3.0712 -8.8554 -3.4169 26 6 2.2181 -8.0655 -2.6692 27 6 1.5299 -2.1638 1.2492 28 1 0.4398 -2.1637 1.2492 29 6 2.0393 -2.8854 2.4985 30 6 2.0399 -0.7213 1.2492 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3632 0.5139 -0.8901 34 1 3.1301 -0.7217 -1.2490 35 1 1.6768 -0.2075 -2.1393 36 1 1.8930 -2.6775 -2.1394 37 1 0.4399 -2.1637 -1.2493 38 1 0.7415 -4.4946 0.4813 39 1 0.0013 -8.3154 -0.7336 40 1 4.2956 -7.2797 -0.1307 41 1 5.8125 -8.6938 -1.4583 42 1 5.0301 -9.6982 -3.5659 43 1 2.7279 -9.2962 -4.3412 44 1 1.2084 -7.8889 -3.0094 45 1 3.1293 -2.8859 2.4988 46 1 1.6763 -2.3713 3.3885 47 1 1.6755 -3.9130 2.4983 48 1 3.1300 -0.7213 1.2494 49 1 1.6769 -0.2076 2.1395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353600793.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:36 Heat of formation + Delta-G solvation = -51.993336 kcal Electronic energy + Delta-G solvation = -27391.711499 eV Core-core repulsion = 23895.681751 eV Total energy + Delta-G solvation = -3496.029747 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.97922 -38.78579 -37.52677 -34.18350 -33.95075 -32.36426 -30.90556 -30.22779 -30.02291 -27.35263 -26.64980 -25.81568 -23.72991 -22.34719 -21.63702 -21.17806 -20.58651 -19.52887 -18.66090 -17.22932 -16.32437 -15.73935 -15.68698 -15.08441 -14.81819 -14.52375 -14.14289 -13.93220 -13.85097 -13.68673 -13.27932 -13.06079 -12.77207 -12.63542 -12.49657 -12.19528 -12.16801 -12.05261 -11.86307 -11.76872 -11.55185 -11.24977 -11.02894 -10.95102 -10.82824 -10.80118 -10.33469 -10.28416 -10.22106 -10.21290 -10.09907 -9.97029 -9.01620 -8.76866 -8.52686 -8.31752 -8.02464 -7.65977 -6.55465 -4.31725 2.28465 2.33343 3.32538 3.38883 3.53574 3.65939 3.96068 4.39265 4.67436 4.69757 4.74737 4.85186 5.04806 5.18462 5.20361 5.30942 5.42581 5.50928 5.58783 5.60304 5.65816 5.67419 5.71019 5.78867 5.82850 5.83572 5.91871 5.99069 6.06303 6.08551 6.09944 6.17962 6.18488 6.27002 6.32524 6.40107 6.44539 6.47127 6.50509 6.61658 6.64702 6.88254 6.98103 7.23718 7.29025 7.36033 7.59861 7.83520 7.96048 8.20287 8.35785 8.62045 9.20119 9.40511 10.82474 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012254 B = 0.004629 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.426571 B = 6047.828537 C = 7463.342175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 H 0.066 0.934 4 C -0.110 4.110 5 C -0.131 4.131 6 C 0.154 3.846 7 H 0.079 0.921 8 N -0.724 5.724 9 C 0.535 3.465 10 O -0.565 6.565 11 C 0.042 3.958 12 H 0.063 0.937 13 C -0.590 4.590 14 H 0.057 0.943 15 C 0.032 3.968 16 N -0.896 5.896 17 Si 1.069 2.931 18 H -0.286 1.286 19 H -0.286 1.286 20 H -0.283 1.283 21 C -0.018 4.018 22 C -0.078 4.078 23 C -0.133 4.133 24 C -0.146 4.146 25 C -0.129 4.129 26 C -0.128 4.128 27 C -0.098 4.098 28 H 0.076 0.924 29 C -0.149 4.149 30 C -0.105 4.105 31 H 0.063 0.937 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.403 0.597 39 H 0.272 0.728 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.108 0.892 45 H 0.052 0.948 46 H 0.051 0.949 47 H 0.067 0.933 48 H 0.062 0.938 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.462 12.515 0.190 12.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.111 4.111 3 H 0.085 0.915 4 C -0.148 4.148 5 C -0.170 4.170 6 C 0.048 3.952 7 H 0.098 0.902 8 N -0.375 5.375 9 C 0.324 3.676 10 O -0.444 6.444 11 C 0.021 3.979 12 H 0.081 0.919 13 C -0.628 4.628 14 H 0.076 0.924 15 C -0.175 4.175 16 N -0.530 5.530 17 Si 0.897 3.103 18 H -0.212 1.212 19 H -0.212 1.212 20 H -0.209 1.209 21 C -0.019 4.019 22 C -0.096 4.096 23 C -0.151 4.151 24 C -0.165 4.165 25 C -0.147 4.147 26 C -0.146 4.146 27 C -0.117 4.117 28 H 0.094 0.906 29 C -0.206 4.206 30 C -0.143 4.143 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.238 0.762 39 H 0.084 0.916 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.086 0.914 48 H 0.081 0.919 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.421 11.608 0.745 11.719 hybrid contribution 0.398 0.859 -0.797 1.238 sum 1.820 12.468 -0.052 12.600 Atomic orbital electron populations 1.21947 0.95405 1.02335 1.01134 1.21118 0.95939 0.98845 0.95188 0.91520 1.21517 1.00667 0.95443 0.97218 1.21972 1.00896 0.95102 0.98993 1.20809 0.99497 0.81518 0.93357 0.90249 1.45965 1.29905 1.07190 1.54422 1.21207 0.82749 0.87725 0.75915 1.90581 1.25751 1.83431 1.44635 1.18163 0.94962 0.87006 0.97818 0.91904 1.21573 1.27032 1.22389 0.91775 0.92433 1.25826 0.91917 0.94044 1.05680 1.70773 1.33769 1.43767 1.04706 0.83528 0.76004 0.76839 0.73937 1.21247 1.21242 1.20877 1.20108 0.94203 0.95615 0.92017 1.20790 0.93393 0.96681 0.98715 1.20987 0.99118 0.99208 0.95807 1.20819 0.96131 1.02091 0.97410 1.20879 0.94306 0.99953 0.99576 1.20969 0.99095 0.99360 0.95172 1.21405 1.00842 0.94640 0.94803 0.90612 1.21836 1.01199 1.01260 0.96310 1.21581 1.00673 0.94654 0.97384 0.91799 0.93007 0.93053 0.91966 0.92148 0.91617 0.91770 0.76248 0.91581 0.87006 0.87430 0.87538 0.87437 0.87381 0.92920 0.93038 0.91385 0.91887 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.50 37.16 0.32 -1.11 16 2 C -0.09 -0.91 3.20 -90.62 -0.29 -1.20 16 3 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.11 -1.25 5.45 -26.73 -0.15 -1.40 16 5 C -0.13 -1.82 5.22 -26.73 -0.14 -1.96 16 6 C 0.15 2.33 1.90 -67.93 -0.13 2.20 16 7 H 0.08 1.39 7.58 -51.93 -0.39 1.00 16 8 N -0.72 -13.04 4.28 -53.81 -0.23 -13.27 16 9 C 0.53 11.74 7.00 -10.99 -0.08 11.66 16 10 O -0.57 -13.66 15.09 5.56 0.08 -13.58 16 11 C 0.04 0.99 2.01 -94.07 -0.19 0.80 16 12 H 0.06 1.54 6.42 -51.93 -0.33 1.21 16 13 C -0.59 -14.76 7.46 -34.44 -0.26 -15.02 16 14 H 0.06 1.46 7.81 -52.49 -0.41 1.06 16 15 C 0.03 0.83 5.45 -17.82 -0.10 0.74 16 16 N -0.90 -24.69 13.62 55.43 0.76 -23.94 16 17 Si 1.07 23.56 29.91 -169.99 -5.08 18.47 16 18 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 C -0.02 -0.43 4.30 -104.63 -0.45 -0.88 16 22 C -0.08 -1.78 8.32 -39.59 -0.33 -2.11 16 23 C -0.13 -2.67 10.05 -39.58 -0.40 -3.07 16 24 C -0.15 -2.76 10.05 -39.58 -0.40 -3.15 16 25 C -0.13 -2.52 10.05 -39.59 -0.40 -2.91 16 26 C -0.13 -2.80 9.67 -39.59 -0.38 -3.18 16 27 C -0.10 -1.21 2.02 -90.62 -0.18 -1.39 16 28 H 0.08 0.90 6.43 -51.93 -0.33 0.57 16 29 C -0.15 -1.93 9.04 37.16 0.34 -1.59 16 30 C -0.10 -1.09 4.73 -26.73 -0.13 -1.22 16 31 H 0.06 0.66 4.81 -51.93 -0.25 0.41 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.06 0.85 6.43 -51.93 -0.33 0.52 16 38 H 0.40 7.02 8.27 -40.82 -0.34 6.68 16 39 H 0.27 7.46 6.66 -40.82 -0.27 7.19 16 40 H 0.11 2.62 7.88 -52.49 -0.41 2.21 16 41 H 0.11 1.85 8.06 -52.49 -0.42 1.42 16 42 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 43 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 44 H 0.11 2.24 7.96 -52.48 -0.42 1.82 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 47 H 0.07 1.01 7.45 -51.93 -0.39 0.62 16 48 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 LS Contribution 381.93 15.07 5.76 5.76 Total: -1.00 -28.90 381.93 -10.23 -39.13 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -8.17 Total: 12.24 kcal Atomic # 6 Polarization: -21.47 SS G_CDS: -3.34 Total: -24.81 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.52 Total: -37.21 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.08 Total: -13.58 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -5.08 Total: 18.47 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.90 -10.23 -39.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353600793.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.865 kcal (2) G-P(sol) polarization free energy of solvation -28.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds