Wall clock time and date at job start Tue Mar 31 2020 10:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08992 * 109.47441 * 2 1 4 4 C 1.52997 * 109.47307 * 239.99723 * 2 1 3 5 5 C 1.53006 * 109.47248 * 300.00372 * 4 2 1 6 6 C 1.52998 * 109.47113 * 299.99851 * 5 4 2 7 7 H 1.09000 * 109.46935 * 300.00130 * 6 5 4 8 8 N 1.46500 * 109.46934 * 180.02562 * 6 5 4 9 9 C 1.34770 * 120.00215 * 85.00345 * 8 6 5 10 10 O 1.21283 * 120.00045 * 359.97438 * 9 8 6 11 11 C 1.50702 * 120.00234 * 180.02562 * 9 8 6 12 12 H 1.09000 * 109.47020 * 59.99035 * 11 9 8 13 13 C 1.50706 * 109.46464 * 299.99606 * 11 9 8 14 14 H 1.07992 * 120.00138 * 335.01939 * 13 11 9 15 15 C 1.37875 * 119.99700 * 155.02315 * 13 11 9 16 16 N 1.31523 * 120.00102 * 355.28730 * 15 13 11 17 17 Si 1.86797 * 120.00046 * 175.28355 * 15 13 11 18 18 H 1.48502 * 109.47030 * 90.00185 * 17 15 13 19 19 H 1.48504 * 109.47053 * 330.00213 * 17 15 13 20 20 H 1.48504 * 109.47355 * 210.00214 * 17 15 13 21 21 C 1.50697 * 109.47332 * 179.97438 * 11 9 8 22 22 C 1.38232 * 120.00211 * 66.35079 * 21 11 9 23 23 C 1.38228 * 120.00040 * 179.79081 * 22 21 11 24 24 C 1.38240 * 119.99941 * 0.46074 * 23 22 21 25 25 C 1.38229 * 119.99734 * 359.76943 * 24 23 22 26 26 C 1.38230 * 119.99735 * 246.62618 * 21 11 9 27 27 C 1.52997 * 109.46942 * 59.99961 * 6 5 4 28 28 H 1.09003 * 109.47446 * 59.99857 * 27 6 5 29 29 C 1.52998 * 109.46942 * 179.97438 * 27 6 5 30 30 C 1.52998 * 109.47129 * 299.99776 * 27 6 5 31 31 H 1.09002 * 109.47284 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47353 * 300.00347 * 1 2 3 33 33 H 1.09008 * 109.46475 * 59.99972 * 1 2 3 34 34 H 1.09003 * 109.47446 * 180.02562 * 4 2 1 35 35 H 1.09003 * 109.47519 * 60.00488 * 4 2 1 36 36 H 1.09002 * 109.46856 * 179.97438 * 5 4 2 37 37 H 1.09005 * 109.46826 * 60.00249 * 5 4 2 38 38 H 0.97005 * 119.99560 * 264.99819 * 8 6 5 39 39 H 0.96996 * 119.99521 * 5.54736 * 16 15 13 40 40 H 1.08001 * 119.99539 * 359.97438 * 22 21 11 41 41 H 1.07999 * 120.00117 * 180.24933 * 23 22 21 42 42 H 1.07995 * 119.99744 * 179.79317 * 24 23 22 43 43 H 1.08001 * 119.99914 * 180.02562 * 25 24 23 44 44 H 1.08005 * 120.00447 * 359.97438 * 26 21 11 45 45 H 1.09005 * 109.47600 * 59.99963 * 29 27 6 46 46 H 1.09008 * 109.47214 * 179.97438 * 29 27 6 47 47 H 1.09006 * 109.47129 * 299.99662 * 29 27 6 48 48 H 1.09003 * 109.47542 * 299.99776 * 30 27 6 49 49 H 1.09008 * 109.47093 * 180.02562 * 30 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5300 -2.1638 -1.2492 6 6 2.0399 -2.8851 0.0001 7 1 3.1299 -2.8851 0.0001 8 7 1.5520 -4.2665 -0.0003 9 6 2.2293 -5.2202 -0.6697 10 8 3.2424 -4.9348 -1.2722 11 6 1.7271 -6.6411 -0.6705 12 1 0.7281 -6.6730 -1.1053 13 6 1.6757 -7.1564 0.7447 14 1 2.3177 -6.7268 1.4995 15 6 0.8091 -8.1763 1.0759 16 7 -0.0377 -8.6365 0.1809 17 14 0.8376 -8.9047 2.7958 18 1 -0.1046 -8.1562 3.6660 19 1 2.2108 -8.8057 3.3526 20 1 0.4294 -10.3313 2.7361 21 6 2.6571 -7.5021 -1.4857 22 6 3.9511 -7.7239 -1.0529 23 6 4.8028 -8.5173 -1.7985 24 6 4.3636 -9.0811 -2.9818 25 6 3.0712 -8.8554 -3.4169 26 6 2.2181 -8.0655 -2.6692 27 6 1.5299 -2.1638 1.2492 28 1 0.4398 -2.1637 1.2492 29 6 2.0393 -2.8854 2.4985 30 6 2.0399 -0.7213 1.2492 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3632 0.5139 -0.8901 34 1 3.1301 -0.7217 -1.2490 35 1 1.6768 -0.2075 -2.1393 36 1 1.8930 -2.6775 -2.1394 37 1 0.4399 -2.1637 -1.2493 38 1 0.7415 -4.4946 0.4813 39 1 0.0013 -8.3154 -0.7336 40 1 4.2956 -7.2797 -0.1307 41 1 5.8125 -8.6938 -1.4583 42 1 5.0301 -9.6982 -3.5659 43 1 2.7279 -9.2962 -4.3412 44 1 1.2084 -7.8889 -3.0094 45 1 3.1293 -2.8859 2.4988 46 1 1.6763 -2.3713 3.3885 47 1 1.6755 -3.9130 2.4983 48 1 3.1300 -0.7213 1.2494 49 1 1.6769 -0.2076 2.1395 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353600793.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:35 Heat of formation + Delta-G solvation = -65.636485 kcal Electronic energy + Delta-G solvation = -27392.303110 eV Core-core repulsion = 23895.681751 eV Total energy + Delta-G solvation = -3496.621359 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.38030 -40.24078 -39.08520 -35.86365 -35.50077 -33.50538 -32.70683 -31.65761 -31.44389 -28.96738 -27.54486 -27.01618 -25.62881 -23.61252 -23.27575 -22.45866 -21.93461 -21.17654 -19.79165 -19.01345 -17.83370 -17.44487 -17.15022 -16.28443 -16.14172 -15.79481 -15.69374 -15.62031 -15.35219 -14.84328 -14.73033 -14.46946 -14.15138 -14.02687 -14.00191 -13.74035 -13.61657 -13.25669 -13.11412 -12.88753 -12.84051 -12.69709 -12.59157 -12.25153 -12.00760 -11.98380 -11.95239 -11.81004 -11.76686 -11.30499 -11.17448 -11.02612 -10.91244 -10.60345 -10.43869 -9.85694 -9.67274 -9.35373 -8.62541 -6.38252 0.63443 0.69463 1.53457 1.61902 1.78647 1.87873 2.45955 2.55307 3.08473 3.21375 3.61842 3.73276 3.88801 4.08709 4.10495 4.17625 4.19813 4.27115 4.32127 4.36415 4.37779 4.47558 4.48582 4.53756 4.65948 4.69397 4.76404 4.82180 4.83396 4.89712 4.94750 4.99978 5.07203 5.08792 5.14084 5.23137 5.23441 5.26799 5.30674 5.39484 5.41040 5.45305 5.61118 5.66549 5.69352 5.72174 5.77941 6.04682 6.14408 6.29429 6.53751 6.72688 7.39523 7.48231 8.75595 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012254 B = 0.004629 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.426571 B = 6047.828537 C = 7463.342175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.087 4.087 3 H 0.087 0.913 4 C -0.107 4.107 5 C -0.125 4.125 6 C 0.152 3.848 7 H 0.053 0.947 8 N -0.712 5.712 9 C 0.533 3.467 10 O -0.592 6.592 11 C 0.042 3.958 12 H 0.045 0.955 13 C -0.583 4.583 14 H 0.047 0.953 15 C -0.008 4.008 16 N -0.921 5.921 17 Si 1.108 2.892 18 H -0.266 1.266 19 H -0.278 1.278 20 H -0.288 1.288 21 C -0.046 4.046 22 C -0.106 4.106 23 C -0.134 4.134 24 C -0.140 4.140 25 C -0.127 4.127 26 C -0.151 4.151 27 C -0.090 4.090 28 H 0.086 0.914 29 C -0.147 4.147 30 C -0.101 4.101 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.033 0.967 37 H 0.072 0.928 38 H 0.406 0.594 39 H 0.263 0.737 40 H 0.092 0.908 41 H 0.138 0.862 42 H 0.150 0.850 43 H 0.143 0.857 44 H 0.107 0.893 45 H 0.043 0.957 46 H 0.076 0.924 47 H 0.042 0.958 48 H 0.059 0.941 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.753 13.493 0.545 13.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.106 4.106 3 H 0.106 0.894 4 C -0.145 4.145 5 C -0.164 4.164 6 C 0.048 3.952 7 H 0.071 0.929 8 N -0.361 5.361 9 C 0.321 3.679 10 O -0.474 6.474 11 C 0.021 3.979 12 H 0.063 0.937 13 C -0.621 4.621 14 H 0.065 0.935 15 C -0.209 4.209 16 N -0.557 5.557 17 Si 0.931 3.069 18 H -0.191 1.191 19 H -0.204 1.204 20 H -0.214 1.214 21 C -0.047 4.047 22 C -0.124 4.124 23 C -0.152 4.152 24 C -0.158 4.158 25 C -0.144 4.144 26 C -0.169 4.169 27 C -0.109 4.109 28 H 0.104 0.896 29 C -0.204 4.204 30 C -0.139 4.139 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.241 0.759 39 H 0.073 0.927 40 H 0.110 0.890 41 H 0.155 0.845 42 H 0.168 0.832 43 H 0.160 0.840 44 H 0.125 0.875 45 H 0.062 0.938 46 H 0.095 0.905 47 H 0.061 0.939 48 H 0.078 0.922 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.697 12.631 1.111 12.793 hybrid contribution 0.367 0.566 -0.986 1.195 sum 2.065 13.197 0.126 13.358 Atomic orbital electron populations 1.21938 0.94772 1.01819 1.02219 1.21112 0.96375 0.99451 0.93619 0.89445 1.21512 1.00288 0.93636 0.99040 1.21898 1.01269 0.96542 0.96657 1.21009 0.98058 0.80188 0.95962 0.92853 1.45927 1.29275 1.08029 1.52898 1.21002 0.82671 0.87911 0.76286 1.90546 1.26939 1.83781 1.46086 1.18095 0.94345 0.88297 0.97202 0.93693 1.21624 1.26183 1.21987 0.92297 0.93503 1.26964 0.91526 0.94294 1.08162 1.70863 1.35226 1.44978 1.04642 0.83019 0.76802 0.76045 0.71013 1.19113 1.20385 1.21395 1.20170 0.94734 0.96568 0.93227 1.20804 0.93990 0.98587 0.99053 1.21363 0.99995 0.97937 0.95877 1.21315 0.96341 1.01297 0.96858 1.21315 0.94301 0.98590 1.00243 1.21160 0.99816 1.00519 0.95435 1.21383 1.01308 0.95610 0.92573 0.89616 1.21818 1.00622 1.00220 0.97767 1.21585 1.00528 0.93044 0.98763 0.93065 0.91608 0.92383 0.92616 0.90835 0.94859 0.90933 0.75917 0.92651 0.88958 0.84465 0.83188 0.83966 0.87506 0.93811 0.90531 0.93859 0.92236 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.42 8.50 71.98 0.61 -1.81 16 2 C -0.09 -1.50 3.20 -10.79 -0.03 -1.54 16 3 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 4 C -0.11 -2.32 5.45 30.60 0.17 -2.15 16 5 C -0.13 -3.56 5.22 30.60 0.16 -3.40 16 6 C 0.15 4.77 1.90 44.99 0.09 4.86 16 7 H 0.05 1.97 7.58 -2.39 -0.02 1.95 16 8 N -0.71 -27.03 4.28 -442.54 -1.90 -28.92 16 9 C 0.53 24.82 7.00 87.66 0.61 25.44 16 10 O -0.59 -30.32 15.09 -3.04 -0.05 -30.37 16 11 C 0.04 2.10 2.01 -13.03 -0.03 2.07 16 12 H 0.05 2.37 6.42 -2.39 -0.02 2.35 16 13 C -0.58 -30.41 7.46 25.60 0.19 -30.22 16 14 H 0.05 2.49 7.81 -2.91 -0.02 2.47 16 15 C -0.01 -0.43 5.45 84.65 0.46 0.03 16 16 N -0.92 -52.27 13.62 21.45 0.29 -51.98 16 17 Si 1.11 47.86 29.91 68.60 2.05 49.91 16 18 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 19 H -0.28 -11.53 7.11 99.48 0.71 -10.83 16 20 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 21 C -0.05 -2.26 4.30 -19.87 -0.09 -2.34 16 22 C -0.11 -5.00 8.32 22.27 0.19 -4.82 16 23 C -0.13 -5.23 10.05 22.27 0.22 -5.01 16 24 C -0.14 -4.92 10.05 22.27 0.22 -4.70 16 25 C -0.13 -4.75 10.05 22.27 0.22 -4.52 16 26 C -0.15 -6.77 9.67 22.27 0.22 -6.55 16 27 C -0.09 -2.14 2.02 -10.80 -0.02 -2.16 16 28 H 0.09 1.92 6.43 -2.39 -0.02 1.90 16 29 C -0.15 -3.74 9.04 71.98 0.65 -3.09 16 30 C -0.10 -1.89 4.73 30.59 0.14 -1.74 16 31 H 0.05 0.95 4.81 -2.39 -0.01 0.94 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.03 1.14 8.14 -2.39 -0.02 1.13 16 37 H 0.07 1.92 6.43 -2.38 -0.02 1.91 16 38 H 0.41 14.84 8.27 -92.70 -0.77 14.08 16 39 H 0.26 15.04 6.66 -92.71 -0.62 14.42 16 40 H 0.09 4.57 7.88 -2.91 -0.02 4.55 16 41 H 0.14 4.42 8.06 -2.91 -0.02 4.40 16 42 H 0.15 3.96 8.06 -2.91 -0.02 3.93 16 43 H 0.14 4.26 8.06 -2.91 -0.02 4.24 16 44 H 0.11 4.64 7.96 -2.91 -0.02 4.62 16 45 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 46 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 47 H 0.04 1.30 7.45 -2.38 -0.02 1.28 16 48 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 49 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 Total: -1.00 -65.45 381.93 4.70 -60.75 By element: Atomic # 1 Polarization: 41.96 SS G_CDS: 0.31 Total: 42.27 kcal Atomic # 6 Polarization: -45.65 SS G_CDS: 3.99 Total: -41.66 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -1.60 Total: -80.90 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.05 Total: -30.37 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.05 Total: 49.91 kcal Total: -65.45 4.70 -60.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353600793.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.886 kcal (2) G-P(sol) polarization free energy of solvation -65.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds