Wall clock time and date at job start Tue Mar 31 2020 10:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 108.32901 * 2 1 4 4 C 1.52532 * 108.52396 * 242.35643 * 2 1 3 5 5 C 1.50125 * 105.41391 * 149.35033 * 4 2 1 6 6 C 1.54844 * 110.81559 * 97.68894 * 5 4 2 7 7 C 1.54406 * 110.06518 * 321.07156 * 6 5 4 8 8 H 1.09000 * 108.10548 * 80.54400 * 7 6 5 9 9 C 1.53005 * 107.88810 * 196.93090 * 7 6 5 10 10 N 1.43429 * 116.39309 * 318.65001 * 7 6 5 11 11 C 1.34779 * 120.53912 * 271.73192 * 10 7 6 12 12 O 1.21274 * 120.00007 * 4.89734 * 11 10 7 13 13 C 1.50700 * 119.99756 * 184.89550 * 11 10 7 14 14 H 1.09000 * 109.47363 * 299.99831 * 13 11 10 15 15 C 1.50697 * 109.47088 * 60.00282 * 13 11 10 16 16 H 1.08004 * 120.00134 * 31.66391 * 15 13 11 17 17 C 1.37881 * 120.00188 * 211.65633 * 15 13 11 18 18 N 1.31516 * 119.99717 * 4.93042 * 17 15 13 19 19 Si 1.86800 * 120.00333 * 184.92099 * 17 15 13 20 20 H 1.48497 * 109.46808 * 60.00513 * 19 17 15 21 21 H 1.48499 * 109.47071 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47309 * 300.00606 * 19 17 15 23 23 C 1.50697 * 109.46875 * 179.97438 * 13 11 10 24 24 C 1.38231 * 120.00169 * 112.78204 * 23 13 11 25 25 C 1.38240 * 120.00649 * 179.97438 * 24 23 13 26 26 C 1.38244 * 119.99553 * 0.02562 * 25 24 23 27 27 C 1.38234 * 119.99776 * 359.97253 * 26 25 24 28 28 C 1.38237 * 120.00216 * 0.05608 * 27 26 25 29 29 C 1.46239 * 108.52368 * 117.64129 * 2 1 3 30 30 H 1.08994 * 109.47322 * 302.35878 * 1 2 3 31 31 H 1.08998 * 109.47104 * 62.36482 * 1 2 3 32 32 H 1.09006 * 109.47258 * 182.35829 * 1 2 3 33 33 H 1.08999 * 110.25497 * 268.32444 * 4 2 1 34 34 H 1.09004 * 110.24418 * 30.38210 * 4 2 1 35 35 H 1.09002 * 109.20734 * 218.03131 * 5 4 2 36 36 H 1.08996 * 109.21056 * 337.38760 * 5 4 2 37 37 H 1.09002 * 109.36105 * 81.33686 * 6 5 4 38 38 H 1.08994 * 109.35527 * 201.06588 * 6 5 4 39 39 H 1.08999 * 109.47239 * 169.36140 * 9 7 6 40 40 H 1.08998 * 109.47035 * 289.36923 * 9 7 6 41 41 H 1.09007 * 109.46494 * 49.36696 * 9 7 6 42 42 H 0.97001 * 120.00293 * 179.97438 * 18 17 15 43 43 H 1.08003 * 119.99950 * 0.02562 * 24 23 13 44 44 H 1.07995 * 120.00285 * 180.02562 * 25 24 23 45 45 H 1.07996 * 119.99947 * 179.70321 * 26 25 24 46 46 H 1.07998 * 119.99969 * 179.97438 * 27 26 25 47 47 H 1.08002 * 119.99675 * 179.97438 * 28 27 26 48 48 H 1.09004 * 109.84544 * 60.14194 * 29 2 1 49 49 H 1.08998 * 109.84676 * 299.15724 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8727 1.0347 0.0000 4 6 2.0146 -0.6710 -1.2812 5 6 3.3219 -0.0095 -1.6083 6 6 4.5117 -0.8642 -1.1069 7 6 4.1754 -1.4872 0.2653 8 1 3.5573 -2.3687 0.0947 9 6 5.4859 -1.9501 0.9051 10 7 3.4960 -0.6390 1.2013 11 6 4.1938 0.1532 2.0392 12 8 5.4011 0.2198 1.9462 13 6 3.4736 0.9562 3.0916 14 1 2.7697 1.6360 2.6115 15 6 2.7255 0.0245 4.0099 16 1 3.1151 -0.9622 4.2124 17 6 1.5436 0.4317 4.5916 18 7 1.0190 1.5942 4.2706 19 14 0.6873 -0.6677 5.8356 20 1 1.5911 -0.9072 6.9893 21 1 -0.5551 -0.0060 6.3085 22 1 0.3451 -1.9642 5.1975 23 6 4.4749 1.7506 3.8899 24 6 4.4898 3.1301 3.8032 25 6 5.4080 3.8590 4.5359 26 6 6.3116 3.2081 5.3549 27 6 6.2967 1.8285 5.4417 28 6 5.3789 1.0998 4.7085 29 6 1.9946 -0.6433 1.2284 30 1 -0.3634 0.5500 0.8680 31 1 -0.3633 0.4767 -0.9104 32 1 -0.3634 -1.0268 0.0423 33 1 2.1628 -1.7381 -1.1155 34 1 1.2979 -0.5088 -2.0863 35 1 3.4002 0.1157 -2.6882 36 1 3.3579 0.9695 -1.1304 37 1 4.7147 -1.6580 -1.8259 38 1 5.3941 -0.2321 -1.0077 39 1 5.3067 -2.2197 1.9459 40 1 5.8673 -2.8170 0.3656 41 1 6.2173 -1.1430 0.8596 42 1 0.1874 1.8807 4.6795 43 1 3.7836 3.6387 3.1636 44 1 5.4193 4.9367 4.4684 45 1 7.0321 3.7771 5.9237 46 1 7.0029 1.3200 6.0812 47 1 5.3676 0.0219 4.7760 48 1 1.6281 -1.6690 1.2703 49 1 1.6385 -0.0866 2.0952 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001538411266.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:27 Heat of formation + Delta-G solvation = -16.228431 kcal Electronic energy + Delta-G solvation = -28519.426334 eV Core-core repulsion = 25024.947469 eV Total energy + Delta-G solvation = -3494.478865 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.11015 -38.30854 -37.03912 -34.49060 -33.62937 -32.76566 -31.07779 -29.91956 -29.53429 -27.28336 -25.93287 -25.54013 -23.89495 -22.88176 -21.57946 -21.15152 -20.22359 -19.59941 -17.80519 -16.68387 -16.12461 -15.79083 -15.42761 -14.83478 -14.63885 -14.43290 -14.13689 -13.93630 -13.78485 -13.48687 -13.01814 -12.66386 -12.45829 -12.38646 -12.24098 -12.09873 -11.90881 -11.75506 -11.64498 -11.45463 -11.27904 -11.09334 -11.06813 -10.84707 -10.72264 -10.46842 -10.31977 -10.25357 -10.15556 -10.08987 -9.95379 -9.74648 -9.41231 -8.70917 -8.23010 -7.92335 -7.82467 -7.57421 -6.28948 -4.32113 2.39410 2.42570 3.19500 3.25454 3.28440 3.76279 3.86098 4.27558 4.82141 4.97834 5.07435 5.10023 5.14501 5.38720 5.42170 5.55692 5.68816 5.73382 5.80912 5.87082 5.90201 5.94619 5.95726 5.98781 6.06444 6.13342 6.20974 6.22571 6.28190 6.31180 6.42687 6.50189 6.50805 6.56182 6.58339 6.61819 6.63535 6.77086 6.85492 6.90131 6.95272 7.01079 7.20012 7.38530 7.45793 7.58000 7.62215 7.76891 7.97800 8.08401 8.35437 8.69343 9.29066 9.35935 10.78521 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.010511 B = 0.006669 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.352987 B = 4197.452192 C = 5586.341082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 H 0.070 0.930 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.128 4.128 7 C 0.148 3.852 8 H 0.061 0.939 9 C -0.158 4.158 10 N -0.600 5.600 11 C 0.531 3.469 12 O -0.561 6.561 13 C 0.050 3.950 14 H 0.087 0.913 15 C -0.508 4.508 16 H 0.061 0.939 17 C 0.075 3.925 18 N -0.877 5.877 19 Si 0.892 3.108 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.009 4.009 24 C -0.120 4.120 25 C -0.132 4.132 26 C -0.149 4.149 27 C -0.135 4.135 28 C -0.084 4.084 29 C 0.111 3.889 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.036 0.964 41 H 0.087 0.913 42 H 0.268 0.732 43 H 0.110 0.890 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.105 0.895 47 H 0.110 0.890 48 H 0.056 0.944 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.893 -2.601 -7.639 8.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.130 4.130 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.155 4.155 6 C -0.167 4.167 7 C 0.042 3.958 8 H 0.080 0.920 9 C -0.215 4.215 10 N -0.332 5.332 11 C 0.323 3.677 12 O -0.441 6.441 13 C 0.029 3.971 14 H 0.105 0.895 15 C -0.546 4.546 16 H 0.079 0.921 17 C -0.130 4.130 18 N -0.513 5.513 19 Si 0.719 3.281 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.010 4.010 24 C -0.138 4.138 25 C -0.150 4.150 26 C -0.167 4.167 27 C -0.153 4.153 28 C -0.102 4.102 29 C -0.010 4.010 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.106 0.894 42 H 0.078 0.922 43 H 0.128 0.872 44 H 0.123 0.877 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.129 0.871 48 H 0.075 0.925 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.366 -2.443 -7.631 8.128 hybrid contribution -0.633 -0.563 0.735 1.121 sum 0.733 -3.006 -6.896 7.559 Atomic orbital electron populations 1.21904 0.95298 1.01485 1.01785 1.20533 0.95923 1.00982 0.95513 0.91165 1.21162 0.96645 1.00089 0.97148 1.21527 0.94699 0.99648 0.99579 1.22588 0.98328 0.99420 0.96325 1.20359 0.94171 0.92063 0.89200 0.92041 1.22380 0.98339 1.00857 0.99968 1.47963 1.06879 1.43124 1.35259 1.21477 0.87085 0.78359 0.80798 1.90523 1.15087 1.65901 1.72565 1.18140 0.92557 0.94815 0.91557 0.89482 1.20600 1.05905 0.99917 1.28192 0.92082 1.24912 0.96713 0.95221 0.96123 1.69875 1.19793 1.19692 1.41953 0.86640 0.78873 0.80596 0.82029 1.19956 1.21081 1.19914 1.20057 0.93099 0.92910 0.94945 1.20981 0.98459 0.94181 1.00155 1.20891 0.96993 0.98598 0.98527 1.20786 1.00225 0.94551 1.01157 1.20952 0.99647 0.94105 1.00578 1.20819 0.94401 0.99425 0.95538 1.21477 0.78252 1.01476 0.99805 0.91886 0.93245 0.93105 0.91626 0.92097 0.93202 0.91922 0.91911 0.91810 0.92891 0.94491 0.89403 0.92238 0.87170 0.87657 0.87800 0.87689 0.87142 0.92537 0.84422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.91 37.16 0.33 -1.66 16 2 C -0.11 -1.66 2.21 -94.07 -0.21 -1.87 16 3 H 0.07 1.18 6.93 -51.93 -0.36 0.82 16 4 C -0.11 -1.47 5.19 -28.40 -0.15 -1.62 16 5 C -0.12 -1.60 5.65 -27.19 -0.15 -1.75 16 6 C -0.13 -1.84 5.70 -25.02 -0.14 -1.98 16 7 C 0.15 2.41 2.14 -68.82 -0.15 2.27 16 8 H 0.06 0.93 6.89 -51.93 -0.36 0.57 16 9 C -0.16 -2.71 7.75 37.16 0.29 -2.42 16 10 N -0.60 -11.23 2.50 -168.13 -0.42 -11.65 16 11 C 0.53 11.61 6.40 -10.98 -0.07 11.54 16 12 O -0.56 -13.15 12.26 5.56 0.07 -13.08 16 13 C 0.05 1.16 1.60 -94.08 -0.15 1.01 16 14 H 0.09 2.14 6.75 -51.93 -0.35 1.79 16 15 C -0.51 -12.22 5.50 -34.44 -0.19 -12.41 16 16 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 17 C 0.08 1.82 4.93 -17.82 -0.09 1.73 16 18 N -0.88 -21.96 12.82 55.43 0.71 -21.25 16 19 Si 0.89 19.46 29.54 -169.99 -5.02 14.44 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 23 C -0.01 -0.21 4.28 -104.63 -0.45 -0.66 16 24 C -0.12 -2.61 9.67 -39.58 -0.38 -2.99 16 25 C -0.13 -2.56 10.05 -39.58 -0.40 -2.96 16 26 C -0.15 -2.79 10.05 -39.58 -0.40 -3.19 16 27 C -0.13 -2.67 10.05 -39.58 -0.40 -3.07 16 28 C -0.08 -1.88 8.37 -39.58 -0.33 -2.21 16 29 C 0.11 1.95 4.60 -5.20 -0.02 1.92 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.05 0.59 7.98 -51.93 -0.41 0.18 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.84 6.28 -51.93 -0.33 0.51 16 34 H 0.06 0.70 7.73 -51.93 -0.40 0.30 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.98 6.83 -51.93 -0.35 0.62 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 1.01 7.79 -51.93 -0.40 0.61 16 39 H 0.05 1.00 7.76 -51.93 -0.40 0.60 16 40 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 1.69 5.86 -51.92 -0.30 1.38 16 42 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 43 H 0.11 2.32 7.96 -52.48 -0.42 1.91 16 44 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 45 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 46 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 47 H 0.11 2.51 7.85 -52.49 -0.41 2.10 16 48 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 49 H 0.14 2.84 4.45 -51.93 -0.23 2.61 16 LS Contribution 371.68 15.07 5.60 5.60 Total: -1.00 -26.05 371.68 -10.21 -36.26 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -8.09 Total: 9.99 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -3.06 Total: -20.30 kcal Atomic # 7 Polarization: -33.20 SS G_CDS: 0.29 Total: -32.91 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: 0.07 Total: -13.08 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -26.05 -10.21 -36.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001538411266.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.032 kcal (2) G-P(sol) polarization free energy of solvation -26.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds