Wall clock time and date at job start Tue Mar 31 2020 10:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 108.32901 * 2 1 4 4 C 1.52532 * 108.52396 * 242.35643 * 2 1 3 5 5 C 1.50125 * 105.41391 * 149.35033 * 4 2 1 6 6 C 1.54844 * 110.81559 * 97.68894 * 5 4 2 7 7 C 1.54406 * 110.06518 * 321.07156 * 6 5 4 8 8 H 1.09000 * 108.10548 * 80.54400 * 7 6 5 9 9 C 1.53005 * 107.88810 * 196.93090 * 7 6 5 10 10 N 1.43429 * 116.39309 * 318.65001 * 7 6 5 11 11 C 1.34779 * 120.53912 * 271.73192 * 10 7 6 12 12 O 1.21274 * 120.00007 * 4.89734 * 11 10 7 13 13 C 1.50700 * 119.99756 * 184.89550 * 11 10 7 14 14 H 1.09000 * 109.47363 * 299.99831 * 13 11 10 15 15 C 1.50697 * 109.47088 * 60.00282 * 13 11 10 16 16 H 1.08004 * 120.00134 * 31.66391 * 15 13 11 17 17 C 1.37881 * 120.00188 * 211.65633 * 15 13 11 18 18 N 1.31516 * 119.99717 * 4.93042 * 17 15 13 19 19 Si 1.86800 * 120.00333 * 184.92099 * 17 15 13 20 20 H 1.48497 * 109.46808 * 60.00513 * 19 17 15 21 21 H 1.48499 * 109.47071 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47309 * 300.00606 * 19 17 15 23 23 C 1.50697 * 109.46875 * 179.97438 * 13 11 10 24 24 C 1.38231 * 120.00169 * 112.78204 * 23 13 11 25 25 C 1.38240 * 120.00649 * 179.97438 * 24 23 13 26 26 C 1.38244 * 119.99553 * 0.02562 * 25 24 23 27 27 C 1.38234 * 119.99776 * 359.97253 * 26 25 24 28 28 C 1.38237 * 120.00216 * 0.05608 * 27 26 25 29 29 C 1.46239 * 108.52368 * 117.64129 * 2 1 3 30 30 H 1.08994 * 109.47322 * 302.35878 * 1 2 3 31 31 H 1.08998 * 109.47104 * 62.36482 * 1 2 3 32 32 H 1.09006 * 109.47258 * 182.35829 * 1 2 3 33 33 H 1.08999 * 110.25497 * 268.32444 * 4 2 1 34 34 H 1.09004 * 110.24418 * 30.38210 * 4 2 1 35 35 H 1.09002 * 109.20734 * 218.03131 * 5 4 2 36 36 H 1.08996 * 109.21056 * 337.38760 * 5 4 2 37 37 H 1.09002 * 109.36105 * 81.33686 * 6 5 4 38 38 H 1.08994 * 109.35527 * 201.06588 * 6 5 4 39 39 H 1.08999 * 109.47239 * 169.36140 * 9 7 6 40 40 H 1.08998 * 109.47035 * 289.36923 * 9 7 6 41 41 H 1.09007 * 109.46494 * 49.36696 * 9 7 6 42 42 H 0.97001 * 120.00293 * 179.97438 * 18 17 15 43 43 H 1.08003 * 119.99950 * 0.02562 * 24 23 13 44 44 H 1.07995 * 120.00285 * 180.02562 * 25 24 23 45 45 H 1.07996 * 119.99947 * 179.70321 * 26 25 24 46 46 H 1.07998 * 119.99969 * 179.97438 * 27 26 25 47 47 H 1.08002 * 119.99675 * 179.97438 * 28 27 26 48 48 H 1.09004 * 109.84544 * 60.14194 * 29 2 1 49 49 H 1.08998 * 109.84676 * 299.15724 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8727 1.0347 0.0000 4 6 2.0146 -0.6710 -1.2812 5 6 3.3219 -0.0095 -1.6083 6 6 4.5117 -0.8642 -1.1069 7 6 4.1754 -1.4872 0.2653 8 1 3.5573 -2.3687 0.0947 9 6 5.4859 -1.9501 0.9051 10 7 3.4960 -0.6390 1.2013 11 6 4.1938 0.1532 2.0392 12 8 5.4011 0.2198 1.9462 13 6 3.4736 0.9562 3.0916 14 1 2.7697 1.6360 2.6115 15 6 2.7255 0.0245 4.0099 16 1 3.1151 -0.9622 4.2124 17 6 1.5436 0.4317 4.5916 18 7 1.0190 1.5942 4.2706 19 14 0.6873 -0.6677 5.8356 20 1 1.5911 -0.9072 6.9893 21 1 -0.5551 -0.0060 6.3085 22 1 0.3451 -1.9642 5.1975 23 6 4.4749 1.7506 3.8899 24 6 4.4898 3.1301 3.8032 25 6 5.4080 3.8590 4.5359 26 6 6.3116 3.2081 5.3549 27 6 6.2967 1.8285 5.4417 28 6 5.3789 1.0998 4.7085 29 6 1.9946 -0.6433 1.2284 30 1 -0.3634 0.5500 0.8680 31 1 -0.3633 0.4767 -0.9104 32 1 -0.3634 -1.0268 0.0423 33 1 2.1628 -1.7381 -1.1155 34 1 1.2979 -0.5088 -2.0863 35 1 3.4002 0.1157 -2.6882 36 1 3.3579 0.9695 -1.1304 37 1 4.7147 -1.6580 -1.8259 38 1 5.3941 -0.2321 -1.0077 39 1 5.3067 -2.2197 1.9459 40 1 5.8673 -2.8170 0.3656 41 1 6.2173 -1.1430 0.8596 42 1 0.1874 1.8807 4.6795 43 1 3.7836 3.6387 3.1636 44 1 5.4193 4.9367 4.4684 45 1 7.0321 3.7771 5.9237 46 1 7.0029 1.3200 6.0812 47 1 5.3676 0.0219 4.7760 48 1 1.6281 -1.6690 1.2703 49 1 1.6385 -0.0866 2.0952 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001538411266.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:26 Heat of formation + Delta-G solvation = -26.532404 kcal Electronic energy + Delta-G solvation = -28519.873147 eV Core-core repulsion = 25024.947469 eV Total energy + Delta-G solvation = -3494.925678 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.62263 -39.86465 -38.54756 -36.01837 -35.21871 -34.19767 -32.81564 -31.54308 -30.87483 -28.99030 -27.16026 -26.91814 -25.67051 -24.27200 -23.21167 -22.57164 -21.65229 -20.90058 -19.42358 -18.51989 -17.65522 -17.44832 -16.90085 -16.33564 -16.14553 -15.74506 -15.69729 -15.56105 -15.13428 -14.92304 -14.66524 -14.15259 -14.04078 -13.92358 -13.60414 -13.41837 -13.31714 -13.14873 -13.05944 -13.05471 -12.85322 -12.75497 -12.63290 -12.25290 -12.18104 -11.99505 -11.92690 -11.64464 -11.61959 -11.33207 -11.24687 -11.22766 -11.06100 -10.58346 -9.92706 -9.56182 -9.33335 -9.23792 -8.17572 -6.24935 0.74751 0.80597 1.41866 1.45277 1.50389 2.03916 2.37157 2.45245 3.09997 3.25284 3.79332 3.81218 4.00907 4.14143 4.20411 4.21983 4.28984 4.33251 4.38253 4.44079 4.53511 4.56583 4.62367 4.73279 4.79951 4.86196 4.87464 4.90015 4.94420 4.97361 5.02895 5.09659 5.13780 5.23092 5.25770 5.30597 5.33784 5.43165 5.45080 5.46228 5.48832 5.55766 5.60251 5.66801 5.77545 5.82895 5.97252 6.13069 6.25880 6.40610 6.71743 6.76645 7.37654 7.67556 8.89505 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.010511 B = 0.006669 C = 0.005011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.352987 B = 4197.452192 C = 5586.341082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.106 4.106 3 H 0.044 0.956 4 C -0.103 4.103 5 C -0.115 4.115 6 C -0.121 4.121 7 C 0.138 3.862 8 H 0.085 0.915 9 C -0.149 4.149 10 N -0.596 5.596 11 C 0.526 3.474 12 O -0.584 6.584 13 C 0.057 3.943 14 H 0.061 0.939 15 C -0.505 4.505 16 H 0.046 0.954 17 C 0.043 3.957 18 N -0.899 5.899 19 Si 0.939 3.061 20 H -0.282 1.282 21 H -0.282 1.282 22 H -0.263 1.263 23 C -0.037 4.037 24 C -0.144 4.144 25 C -0.129 4.129 26 C -0.144 4.144 27 C -0.135 4.135 28 C -0.109 4.109 29 C 0.112 3.888 30 H 0.038 0.962 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.033 0.967 37 H 0.096 0.904 38 H 0.042 0.958 39 H 0.025 0.975 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.267 0.733 43 H 0.103 0.897 44 H 0.139 0.861 45 H 0.146 0.854 46 H 0.134 0.866 47 H 0.093 0.907 48 H 0.071 0.929 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.011 -3.391 -8.641 9.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.126 4.126 3 H 0.062 0.938 4 C -0.140 4.140 5 C -0.152 4.152 6 C -0.160 4.160 7 C 0.033 3.967 8 H 0.103 0.897 9 C -0.207 4.207 10 N -0.327 5.327 11 C 0.317 3.683 12 O -0.466 6.466 13 C 0.036 3.964 14 H 0.079 0.921 15 C -0.542 4.542 16 H 0.064 0.936 17 C -0.159 4.159 18 N -0.536 5.536 19 Si 0.765 3.235 20 H -0.208 1.208 21 H -0.208 1.208 22 H -0.188 1.188 23 C -0.038 4.038 24 C -0.162 4.162 25 C -0.147 4.147 26 C -0.161 4.161 27 C -0.153 4.153 28 C -0.127 4.127 29 C -0.009 4.009 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.052 0.948 37 H 0.114 0.886 38 H 0.061 0.939 39 H 0.044 0.956 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.122 0.878 44 H 0.156 0.844 45 H 0.164 0.836 46 H 0.152 0.848 47 H 0.111 0.889 48 H 0.089 0.911 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.464 -3.252 -8.656 9.362 hybrid contribution -0.601 -0.293 1.050 1.245 sum 0.863 -3.545 -7.606 8.436 Atomic orbital electron populations 1.21845 0.93887 1.02336 1.01729 1.20441 0.97038 0.99443 0.95652 0.93786 1.21131 0.96530 1.00174 0.96192 1.21499 0.94838 0.98072 1.00815 1.22550 0.97766 1.00077 0.95584 1.20664 0.93869 0.92513 0.89606 0.89681 1.22243 0.98337 1.01191 0.98889 1.47994 1.07457 1.42316 1.34931 1.21291 0.86848 0.78919 0.81253 1.90504 1.15789 1.66925 1.73353 1.17964 0.92252 0.94404 0.91749 0.92066 1.20533 1.06057 0.99349 1.28307 0.93550 1.25397 0.97126 0.96136 0.97268 1.69970 1.20015 1.20831 1.42749 0.85892 0.77834 0.79784 0.79975 1.20834 1.20768 1.18784 1.20196 0.93991 0.93800 0.95836 1.21121 0.99727 0.93982 1.01418 1.21287 0.95808 1.00273 0.97307 1.21252 1.00205 0.94245 1.00442 1.21318 0.99052 0.94998 0.99941 1.20825 0.95923 0.98887 0.97085 1.21443 0.77495 1.01944 1.00018 0.94285 0.91198 0.91507 0.90526 0.89631 0.90670 0.94818 0.88587 0.93945 0.95622 0.91213 0.91941 0.92386 0.87837 0.84356 0.83598 0.84806 0.88853 0.91077 0.87775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 8.91 71.98 0.64 -3.02 16 2 C -0.11 -3.18 2.21 -13.03 -0.03 -3.21 16 3 H 0.04 1.54 6.93 -2.39 -0.02 1.53 16 4 C -0.10 -2.40 5.19 29.51 0.15 -2.25 16 5 C -0.11 -2.94 5.65 30.30 0.17 -2.77 16 6 C -0.12 -3.28 5.70 31.70 0.18 -3.10 16 7 C 0.14 4.40 2.14 46.04 0.10 4.50 16 8 H 0.09 2.34 6.89 -2.39 -0.02 2.32 16 9 C -0.15 -5.12 7.75 71.98 0.56 -4.56 16 10 N -0.60 -22.97 2.50 -804.25 -2.01 -24.98 16 11 C 0.53 24.34 6.40 87.66 0.56 24.90 16 12 O -0.58 -28.95 12.26 -3.01 -0.04 -28.99 16 13 C 0.06 2.83 1.60 -13.03 -0.02 2.81 16 14 H 0.06 3.28 6.75 -2.39 -0.02 3.26 16 15 C -0.50 -25.53 5.50 25.60 0.14 -25.38 16 16 H 0.05 2.43 7.82 -2.91 -0.02 2.40 16 17 C 0.04 2.16 4.93 84.66 0.42 2.58 16 18 N -0.90 -46.91 12.82 21.45 0.27 -46.64 16 19 Si 0.94 40.66 29.54 68.60 2.03 42.69 16 20 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 21 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 22 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 23 C -0.04 -1.82 4.28 -19.87 -0.09 -1.90 16 24 C -0.14 -6.51 9.67 22.27 0.22 -6.30 16 25 C -0.13 -4.86 10.05 22.27 0.22 -4.64 16 26 C -0.14 -5.05 10.05 22.27 0.22 -4.83 16 27 C -0.14 -5.25 10.05 22.27 0.22 -5.03 16 28 C -0.11 -5.07 8.37 22.27 0.19 -4.88 16 29 C 0.11 4.00 4.60 83.58 0.38 4.39 16 30 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.53 7.98 -2.39 -0.02 1.51 16 32 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.08 1.66 6.28 -2.39 -0.02 1.65 16 34 H 0.09 1.63 7.73 -2.38 -0.02 1.61 16 35 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.03 1.06 6.83 -2.39 -0.02 1.04 16 37 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.04 1.33 7.79 -2.39 -0.02 1.31 16 39 H 0.02 0.98 7.76 -2.39 -0.02 0.96 16 40 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.06 2.47 5.86 -2.38 -0.01 2.46 16 42 H 0.27 13.40 8.31 -92.71 -0.77 12.63 16 43 H 0.10 4.65 7.96 -2.91 -0.02 4.62 16 44 H 0.14 4.22 8.06 -2.91 -0.02 4.19 16 45 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 46 H 0.13 4.32 8.06 -2.91 -0.02 4.29 16 47 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 48 H 0.07 2.31 8.13 -2.39 -0.02 2.29 16 49 H 0.10 4.53 4.45 -2.39 -0.01 4.52 16 Total: -1.00 -60.23 371.68 5.42 -54.81 By element: Atomic # 1 Polarization: 34.87 SS G_CDS: 0.91 Total: 35.78 kcal Atomic # 6 Polarization: -36.93 SS G_CDS: 4.25 Total: -32.68 kcal Atomic # 7 Polarization: -69.88 SS G_CDS: -1.73 Total: -71.61 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.04 Total: -28.99 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -60.23 5.42 -54.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001538411266.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.280 kcal (2) G-P(sol) polarization free energy of solvation -60.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds