Wall clock time and date at job start Tue Mar 31 2020 10:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.33353 * 2 1 4 4 C 1.47088 * 109.33179 * 240.34424 * 2 1 3 5 5 C 1.52573 * 114.33109 * 177.11308 * 4 2 1 6 6 C 1.50884 * 109.35247 * 85.01695 * 5 4 2 7 7 C 1.53946 * 110.09465 * 268.10892 * 6 5 4 8 8 H 1.08997 * 108.94752 * 279.88152 * 7 6 5 9 9 C 1.53008 * 108.94591 * 161.24873 * 7 6 5 10 10 N 1.47609 * 112.14048 * 40.57035 * 7 6 5 11 11 C 1.34773 * 118.64119 * 222.13130 * 10 7 6 12 12 O 1.21285 * 119.99906 * 174.09387 * 11 10 7 13 13 C 1.50702 * 120.00264 * 354.08812 * 11 10 7 14 14 H 1.08994 * 109.47162 * 318.58761 * 13 11 10 15 15 C 1.50706 * 109.46891 * 78.58461 * 13 11 10 16 16 H 1.07996 * 120.00110 * 33.56898 * 15 13 11 17 17 C 1.37877 * 119.99831 * 213.57449 * 15 13 11 18 18 N 1.31514 * 120.00157 * 4.98382 * 17 15 13 19 19 Si 1.86798 * 120.00137 * 184.98068 * 17 15 13 20 20 H 1.48500 * 109.46812 * 59.99911 * 19 17 15 21 21 H 1.48496 * 109.47347 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47138 * 300.00470 * 19 17 15 23 23 C 1.50698 * 109.47295 * 198.58443 * 13 11 10 24 24 C 1.38236 * 119.99581 * 292.53091 * 23 13 11 25 25 C 1.38238 * 119.99523 * 179.76457 * 24 23 13 26 26 C 1.38237 * 120.00275 * 0.48980 * 25 24 23 27 27 C 1.38241 * 119.99823 * 359.79028 * 26 25 24 28 28 C 1.38233 * 119.99692 * 359.95298 * 27 26 25 29 29 C 1.44265 * 122.59765 * 42.07141 * 10 7 6 30 30 H 1.08992 * 109.47586 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47427 * 300.00844 * 1 2 3 32 32 H 1.09002 * 109.47272 * 59.99969 * 1 2 3 33 33 H 1.09002 * 108.51542 * 298.37404 * 4 2 1 34 34 H 1.09001 * 108.51232 * 56.02021 * 4 2 1 35 35 H 1.09002 * 109.49373 * 204.98326 * 5 4 2 36 36 H 1.08993 * 109.48678 * 325.05434 * 5 4 2 37 37 H 1.09006 * 109.36842 * 28.30264 * 6 5 4 38 38 H 1.09003 * 109.36458 * 148.04449 * 6 5 4 39 39 H 1.09000 * 109.46293 * 60.00254 * 9 7 6 40 40 H 1.09003 * 109.46843 * 179.97438 * 9 7 6 41 41 H 1.08996 * 109.47040 * 300.00561 * 9 7 6 42 42 H 0.97001 * 120.00187 * 180.02562 * 18 17 15 43 43 H 1.07993 * 120.00394 * 359.97438 * 24 23 13 44 44 H 1.07998 * 120.00341 * 180.25115 * 25 24 23 45 45 H 1.07993 * 120.00323 * 179.76804 * 26 25 24 46 46 H 1.07992 * 119.99885 * 179.97438 * 27 26 25 47 47 H 1.08001 * 119.99908 * 180.02562 * 28 27 26 48 48 H 1.09008 * 109.18950 * 149.16839 * 29 10 7 49 49 H 1.09001 * 109.54300 * 29.35384 * 29 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8908 1.0285 0.0000 4 6 2.0168 -0.6867 -1.2061 5 6 3.5351 -0.6920 -1.3568 6 6 4.1108 -1.8497 -0.5791 7 6 4.4752 -1.3996 0.8473 8 1 5.4343 -0.8823 0.8209 9 6 4.6041 -2.6352 1.7404 10 7 3.4591 -0.4964 1.4223 11 6 3.8724 0.5827 2.1159 12 8 3.0642 1.3981 2.5071 13 6 5.3386 0.7763 2.4054 14 1 5.7833 -0.1792 2.6833 15 6 6.0269 1.3121 1.1764 16 1 5.5002 1.9792 0.5102 17 6 7.3289 0.9505 0.9026 18 7 7.9377 0.0628 1.6583 19 14 8.2283 1.7213 -0.5418 20 1 8.2965 3.1929 -0.3541 21 1 9.6043 1.1686 -0.6202 22 1 7.4991 1.4160 -1.7990 23 6 5.5018 1.7551 3.5395 24 6 5.1538 3.0813 3.3633 25 6 5.2989 3.9782 4.4052 26 6 5.8015 3.5511 5.6200 27 6 6.1549 2.2260 5.7944 28 6 6.0048 1.3281 4.7542 29 6 2.0425 -0.7230 1.2700 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.6679 -1.7191 -1.1813 34 1 1.5863 -0.1981 -2.0802 35 1 3.7957 -0.7959 -2.4101 36 1 3.9419 0.2430 -0.9718 37 1 3.3750 -2.6523 -0.5280 38 1 5.0072 -2.2127 -1.0818 39 1 5.3856 -3.2864 1.3490 40 1 4.8627 -2.3260 2.7532 41 1 3.6563 -3.1733 1.7551 42 1 8.8538 -0.1913 1.4658 43 1 4.7654 3.4160 2.4128 44 1 5.0233 5.0135 4.2689 45 1 5.9184 4.2525 6.4328 46 1 6.5480 1.8924 6.7433 47 1 6.2806 0.2928 4.8905 48 1 1.5213 -0.3336 2.1446 49 1 1.8518 -1.7924 1.1807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001538411267.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:30 Heat of formation + Delta-G solvation = -32.698684 kcal Electronic energy + Delta-G solvation = -28449.701176 eV Core-core repulsion = 24954.508108 eV Total energy + Delta-G solvation = -3495.193068 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.97081 -38.28073 -36.89245 -34.79281 -33.50333 -32.67991 -31.06578 -29.91949 -29.56542 -27.78506 -26.06200 -25.61484 -23.64180 -22.46430 -21.57537 -21.09094 -20.14845 -19.84047 -17.77026 -16.70026 -16.30930 -15.98802 -15.53362 -14.87909 -14.46138 -14.21640 -14.14654 -13.98855 -13.50799 -13.31746 -13.16605 -12.90140 -12.61147 -12.46215 -12.24173 -12.17512 -11.88157 -11.72230 -11.63136 -11.59132 -11.38116 -11.06302 -11.00545 -10.91959 -10.66485 -10.45443 -10.34238 -10.28776 -10.20600 -10.12034 -9.89692 -9.73183 -9.43372 -8.75803 -8.48017 -7.92581 -7.83219 -7.58688 -6.28762 -4.32326 2.37868 2.41956 3.20509 3.25945 3.28920 3.72820 3.92112 4.28461 4.81966 4.95296 5.06890 5.08825 5.23779 5.34321 5.40415 5.64048 5.72725 5.72955 5.79119 5.81613 5.86152 5.88452 5.93976 5.97778 6.07412 6.13207 6.14995 6.23041 6.24787 6.26512 6.34270 6.42197 6.46285 6.51746 6.58415 6.62425 6.65556 6.73087 6.82691 6.88007 6.95133 6.99689 7.19595 7.38230 7.46643 7.57801 7.63172 7.77884 7.98216 8.07019 8.32172 8.70795 9.27708 9.32342 10.78937 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.010938 B = 0.006424 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.206103 B = 4357.296789 C = 5593.996576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.108 4.108 3 H 0.074 0.926 4 C -0.105 4.105 5 C -0.119 4.119 6 C -0.118 4.118 7 C 0.121 3.879 8 H 0.139 0.861 9 C -0.157 4.157 10 N -0.601 5.601 11 C 0.526 3.474 12 O -0.564 6.564 13 C 0.050 3.950 14 H 0.089 0.911 15 C -0.507 4.507 16 H 0.061 0.939 17 C 0.076 3.924 18 N -0.878 5.878 19 Si 0.892 3.108 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.273 1.273 23 C -0.019 4.019 24 C -0.077 4.077 25 C -0.137 4.137 26 C -0.148 4.148 27 C -0.134 4.134 28 C -0.121 4.121 29 C 0.127 3.873 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.043 0.957 42 H 0.268 0.732 43 H 0.114 0.886 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.106 0.894 47 H 0.111 0.889 48 H 0.071 0.929 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.939 -4.238 -1.791 8.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 H 0.093 0.907 4 C -0.143 4.143 5 C -0.156 4.156 6 C -0.156 4.156 7 C 0.019 3.981 8 H 0.156 0.844 9 C -0.215 4.215 10 N -0.333 5.333 11 C 0.317 3.683 12 O -0.443 6.443 13 C 0.028 3.972 14 H 0.107 0.893 15 C -0.544 4.544 16 H 0.079 0.921 17 C -0.128 4.128 18 N -0.513 5.513 19 Si 0.719 3.281 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.020 4.020 24 C -0.095 4.095 25 C -0.155 4.155 26 C -0.166 4.166 27 C -0.152 4.152 28 C -0.140 4.140 29 C 0.003 3.997 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.132 0.868 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.124 0.876 47 H 0.129 0.871 48 H 0.090 0.910 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.183 -3.951 -1.565 8.346 hybrid contribution 0.645 0.350 -0.832 1.109 sum -6.539 -3.601 -2.397 7.840 Atomic orbital electron populations 1.21761 0.95405 1.01151 1.01526 1.20766 0.95040 1.01177 0.95831 0.90730 1.20476 0.96200 1.00135 0.97485 1.21060 0.94922 1.00466 0.99164 1.21708 1.00710 0.97661 0.95551 1.21914 0.94398 0.90866 0.90961 0.84392 1.22170 1.00566 0.98011 1.00802 1.47604 1.04953 1.26535 1.54212 1.21646 0.92393 0.79099 0.75115 1.90558 1.56941 1.42878 1.53885 1.18180 0.87862 0.97381 0.93731 0.89343 1.20561 0.97699 1.29697 1.06489 0.92124 1.24906 0.97237 0.94207 0.96492 1.69869 1.13020 1.29973 1.38468 0.86630 0.78847 0.80136 0.82483 1.19927 1.21048 1.19859 1.20151 0.93382 0.95052 0.93390 1.20879 0.97554 0.93087 0.97952 1.20987 1.01667 0.98835 0.94025 1.20802 1.02819 0.95749 0.97228 1.20885 1.02091 0.93862 0.98383 1.20999 1.00779 0.99113 0.93061 1.21197 0.82718 0.98646 0.97166 0.93127 0.92622 0.93057 0.92957 0.93253 0.92703 0.90348 0.92686 0.91322 0.92071 0.92382 0.93821 0.92232 0.86805 0.87634 0.87775 0.87626 0.87117 0.91021 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.11 37.15 0.34 -1.40 16 2 C -0.11 -1.63 2.62 -92.48 -0.24 -1.87 16 3 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 4 C -0.11 -1.44 4.37 -29.79 -0.13 -1.57 16 5 C -0.12 -1.81 5.51 -28.01 -0.15 -1.97 16 6 C -0.12 -1.76 5.07 -27.30 -0.14 -1.90 16 7 C 0.12 2.13 2.14 -66.83 -0.14 1.98 16 8 H 0.14 2.89 4.56 -51.93 -0.24 2.66 16 9 C -0.16 -2.46 9.32 37.16 0.35 -2.11 16 10 N -0.60 -11.22 1.83 -165.26 -0.30 -11.52 16 11 C 0.53 11.69 6.75 -10.99 -0.07 11.61 16 12 O -0.56 -13.71 14.74 5.55 0.08 -13.63 16 13 C 0.05 1.15 1.58 -94.07 -0.15 1.01 16 14 H 0.09 2.15 5.90 -51.93 -0.31 1.84 16 15 C -0.51 -12.41 6.12 -34.44 -0.21 -12.62 16 16 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 17 C 0.08 1.87 5.06 -17.82 -0.09 1.78 16 18 N -0.88 -22.06 12.79 55.43 0.71 -21.36 16 19 Si 0.89 19.69 29.54 -169.99 -5.02 14.67 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 C -0.02 -0.44 4.49 -104.63 -0.47 -0.91 16 24 C -0.08 -1.74 8.06 -39.58 -0.32 -2.06 16 25 C -0.14 -2.74 10.05 -39.58 -0.40 -3.13 16 26 C -0.15 -2.76 10.05 -39.58 -0.40 -3.16 16 27 C -0.13 -2.58 10.05 -39.58 -0.40 -2.98 16 28 C -0.12 -2.63 9.67 -39.58 -0.38 -3.01 16 29 C 0.13 2.07 4.59 -4.25 -0.02 2.05 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.65 7.36 -51.93 -0.38 0.27 16 34 H 0.05 0.63 8.11 -51.93 -0.42 0.21 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.45 7.48 -51.93 -0.39 1.06 16 37 H 0.05 0.73 7.15 -51.93 -0.37 0.36 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.98 7.90 -51.93 -0.41 0.57 16 41 H 0.04 0.60 7.91 -51.93 -0.41 0.19 16 42 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 43 H 0.11 2.67 7.79 -52.49 -0.41 2.26 16 44 H 0.11 1.82 8.06 -52.49 -0.42 1.40 16 45 H 0.10 1.62 8.06 -52.49 -0.42 1.19 16 46 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 47 H 0.11 2.30 7.96 -52.49 -0.42 1.88 16 48 H 0.07 1.26 7.35 -51.92 -0.38 0.88 16 49 H 0.06 0.89 7.85 -51.93 -0.41 0.48 16 LS Contribution 379.42 15.07 5.72 5.72 Total: -1.00 -26.68 379.42 -10.16 -36.84 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -8.32 Total: 9.54 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: -3.03 Total: -20.26 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.41 Total: -32.88 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.08 Total: -13.63 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -26.68 -10.16 -36.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001538411267.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.143 kcal (2) G-P(sol) polarization free energy of solvation -26.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds