Wall clock time and date at job start Tue Mar 31 2020 10:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09002 * 109.33353 * 2 1 4 4 C 1.47088 * 109.33179 * 240.34424 * 2 1 3 5 5 C 1.52573 * 114.33109 * 177.11308 * 4 2 1 6 6 C 1.50884 * 109.35247 * 85.01695 * 5 4 2 7 7 C 1.53946 * 110.09465 * 268.10892 * 6 5 4 8 8 H 1.08997 * 108.94752 * 279.88152 * 7 6 5 9 9 C 1.53008 * 108.94591 * 161.24873 * 7 6 5 10 10 N 1.47609 * 112.14048 * 40.57035 * 7 6 5 11 11 C 1.34773 * 118.64119 * 222.13130 * 10 7 6 12 12 O 1.21285 * 119.99906 * 174.09387 * 11 10 7 13 13 C 1.50702 * 120.00264 * 354.08812 * 11 10 7 14 14 H 1.08994 * 109.47162 * 318.58761 * 13 11 10 15 15 C 1.50706 * 109.46891 * 78.58461 * 13 11 10 16 16 H 1.07996 * 120.00110 * 33.56898 * 15 13 11 17 17 C 1.37877 * 119.99831 * 213.57449 * 15 13 11 18 18 N 1.31514 * 120.00157 * 4.98382 * 17 15 13 19 19 Si 1.86798 * 120.00137 * 184.98068 * 17 15 13 20 20 H 1.48500 * 109.46812 * 59.99911 * 19 17 15 21 21 H 1.48496 * 109.47347 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47138 * 300.00470 * 19 17 15 23 23 C 1.50698 * 109.47295 * 198.58443 * 13 11 10 24 24 C 1.38236 * 119.99581 * 292.53091 * 23 13 11 25 25 C 1.38238 * 119.99523 * 179.76457 * 24 23 13 26 26 C 1.38237 * 120.00275 * 0.48980 * 25 24 23 27 27 C 1.38241 * 119.99823 * 359.79028 * 26 25 24 28 28 C 1.38233 * 119.99692 * 359.95298 * 27 26 25 29 29 C 1.44265 * 122.59765 * 42.07141 * 10 7 6 30 30 H 1.08992 * 109.47586 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47427 * 300.00844 * 1 2 3 32 32 H 1.09002 * 109.47272 * 59.99969 * 1 2 3 33 33 H 1.09002 * 108.51542 * 298.37404 * 4 2 1 34 34 H 1.09001 * 108.51232 * 56.02021 * 4 2 1 35 35 H 1.09002 * 109.49373 * 204.98326 * 5 4 2 36 36 H 1.08993 * 109.48678 * 325.05434 * 5 4 2 37 37 H 1.09006 * 109.36842 * 28.30264 * 6 5 4 38 38 H 1.09003 * 109.36458 * 148.04449 * 6 5 4 39 39 H 1.09000 * 109.46293 * 60.00254 * 9 7 6 40 40 H 1.09003 * 109.46843 * 179.97438 * 9 7 6 41 41 H 1.08996 * 109.47040 * 300.00561 * 9 7 6 42 42 H 0.97001 * 120.00187 * 180.02562 * 18 17 15 43 43 H 1.07993 * 120.00394 * 359.97438 * 24 23 13 44 44 H 1.07998 * 120.00341 * 180.25115 * 25 24 23 45 45 H 1.07993 * 120.00323 * 179.76804 * 26 25 24 46 46 H 1.07992 * 119.99885 * 179.97438 * 27 26 25 47 47 H 1.08001 * 119.99908 * 180.02562 * 28 27 26 48 48 H 1.09008 * 109.18950 * 149.16839 * 29 10 7 49 49 H 1.09001 * 109.54300 * 29.35384 * 29 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8908 1.0285 0.0000 4 6 2.0168 -0.6867 -1.2061 5 6 3.5351 -0.6920 -1.3568 6 6 4.1108 -1.8497 -0.5791 7 6 4.4752 -1.3996 0.8473 8 1 5.4343 -0.8823 0.8209 9 6 4.6041 -2.6352 1.7404 10 7 3.4591 -0.4964 1.4223 11 6 3.8724 0.5827 2.1159 12 8 3.0642 1.3981 2.5071 13 6 5.3386 0.7763 2.4054 14 1 5.7833 -0.1792 2.6833 15 6 6.0269 1.3121 1.1764 16 1 5.5002 1.9792 0.5102 17 6 7.3289 0.9505 0.9026 18 7 7.9377 0.0628 1.6583 19 14 8.2283 1.7213 -0.5418 20 1 8.2965 3.1929 -0.3541 21 1 9.6043 1.1686 -0.6202 22 1 7.4991 1.4160 -1.7990 23 6 5.5018 1.7551 3.5395 24 6 5.1538 3.0813 3.3633 25 6 5.2989 3.9782 4.4052 26 6 5.8015 3.5511 5.6200 27 6 6.1549 2.2260 5.7944 28 6 6.0048 1.3281 4.7542 29 6 2.0425 -0.7230 1.2700 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.6679 -1.7191 -1.1813 34 1 1.5863 -0.1981 -2.0802 35 1 3.7957 -0.7959 -2.4101 36 1 3.9419 0.2430 -0.9718 37 1 3.3750 -2.6523 -0.5280 38 1 5.0072 -2.2127 -1.0818 39 1 5.3856 -3.2864 1.3490 40 1 4.8627 -2.3260 2.7532 41 1 3.6563 -3.1733 1.7551 42 1 8.8538 -0.1913 1.4658 43 1 4.7654 3.4160 2.4128 44 1 5.0233 5.0135 4.2689 45 1 5.9184 4.2525 6.4328 46 1 6.5480 1.8924 6.7433 47 1 6.2806 0.2928 4.8905 48 1 1.5213 -0.3336 2.1446 49 1 1.8518 -1.7924 1.1807 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001538411267.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:29 Heat of formation + Delta-G solvation = -43.148286 kcal Electronic energy + Delta-G solvation = -28450.154305 eV Core-core repulsion = 24954.508108 eV Total energy + Delta-G solvation = -3495.646197 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.51596 -39.83535 -38.44752 -36.23709 -35.23077 -34.05938 -32.83913 -31.54518 -30.85248 -29.45065 -27.23033 -27.13126 -25.39260 -23.76052 -23.21301 -22.62227 -21.63424 -21.10694 -19.33259 -18.53325 -17.98376 -17.50942 -17.03557 -16.48776 -16.02612 -15.73715 -15.65784 -15.41906 -14.92810 -14.87468 -14.71570 -14.23118 -14.07321 -13.98587 -13.73032 -13.43822 -13.36394 -13.27916 -13.15855 -12.87744 -12.81600 -12.73734 -12.62624 -12.29814 -12.14909 -12.04292 -11.91944 -11.69727 -11.59888 -11.41113 -11.26900 -11.24407 -11.07622 -10.65889 -10.26393 -9.56632 -9.35418 -9.24457 -8.19891 -6.27360 0.73584 0.79214 1.39392 1.42344 1.47815 1.98605 2.40992 2.43371 3.08577 3.24342 3.72614 3.88952 3.98909 4.08379 4.18743 4.21374 4.28976 4.30451 4.43062 4.49014 4.55717 4.59887 4.62915 4.73787 4.75498 4.77706 4.86912 4.93633 4.95218 4.97159 5.01623 5.03962 5.11090 5.15459 5.24351 5.30647 5.33108 5.36205 5.41604 5.45808 5.48106 5.57071 5.59751 5.66202 5.77009 5.83045 5.97387 6.11127 6.26149 6.39491 6.67445 6.75133 7.35809 7.59420 8.87268 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.010938 B = 0.006424 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2559.206103 B = 4357.296789 C = 5593.996576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.103 4.103 3 H 0.030 0.970 4 C -0.102 4.102 5 C -0.119 4.119 6 C -0.111 4.111 7 C 0.115 3.885 8 H 0.100 0.900 9 C -0.149 4.149 10 N -0.593 5.593 11 C 0.520 3.480 12 O -0.595 6.595 13 C 0.058 3.942 14 H 0.072 0.928 15 C -0.506 4.506 16 H 0.038 0.962 17 C 0.046 3.954 18 N -0.895 5.895 19 Si 0.937 3.063 20 H -0.283 1.283 21 H -0.277 1.277 22 H -0.266 1.266 23 C -0.049 4.049 24 C -0.104 4.104 25 C -0.139 4.139 26 C -0.141 4.141 27 C -0.129 4.129 28 C -0.142 4.142 29 C 0.123 3.877 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.034 0.966 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.035 0.965 41 H 0.068 0.932 42 H 0.268 0.732 43 H 0.090 0.910 44 H 0.132 0.868 45 H 0.147 0.853 46 H 0.142 0.858 47 H 0.109 0.891 48 H 0.054 0.946 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.680 -5.371 -1.863 9.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.123 4.123 3 H 0.049 0.951 4 C -0.139 4.139 5 C -0.157 4.157 6 C -0.149 4.149 7 C 0.013 3.987 8 H 0.118 0.882 9 C -0.207 4.207 10 N -0.323 5.323 11 C 0.311 3.689 12 O -0.477 6.477 13 C 0.037 3.963 14 H 0.090 0.910 15 C -0.544 4.544 16 H 0.056 0.944 17 C -0.156 4.156 18 N -0.531 5.531 19 Si 0.763 3.237 20 H -0.209 1.209 21 H -0.202 1.202 22 H -0.191 1.191 23 C -0.050 4.050 24 C -0.122 4.122 25 C -0.156 4.156 26 C -0.159 4.159 27 C -0.147 4.147 28 C -0.160 4.160 29 C -0.001 4.001 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.053 0.947 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.108 0.892 44 H 0.150 0.850 45 H 0.165 0.835 46 H 0.159 0.841 47 H 0.127 0.873 48 H 0.072 0.928 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.929 -5.117 -1.660 9.582 hybrid contribution 0.858 0.740 -0.755 1.362 sum -7.070 -4.377 -2.415 8.659 Atomic orbital electron populations 1.21707 0.92926 1.02820 1.01684 1.20699 0.97055 0.98618 0.95908 0.95117 1.20434 0.94837 1.01621 0.97012 1.21054 0.96198 0.98482 0.99926 1.21694 1.01868 0.98112 0.93258 1.21941 0.92577 0.90874 0.93315 0.88169 1.22089 1.02318 0.97300 0.99040 1.47601 1.06435 1.25424 1.52819 1.21541 0.91874 0.79875 0.75649 1.90516 1.57347 1.44231 1.55565 1.18001 0.88381 0.96502 0.93456 0.91031 1.20457 0.97975 1.29198 1.06751 0.94399 1.25352 0.97537 0.94523 0.98216 1.69939 1.13088 1.30670 1.39442 0.85927 0.78284 0.78760 0.80724 1.20925 1.20228 1.19132 1.20301 0.94914 0.95441 0.94342 1.20843 0.99402 0.93751 0.98244 1.21330 1.00863 0.99668 0.93783 1.21270 1.00826 0.96226 0.97587 1.21304 1.00715 0.93793 0.98892 1.21152 1.01587 0.99818 0.93482 1.21416 0.80841 1.00561 0.97248 0.90600 0.93589 0.91888 0.90189 0.92020 0.91077 0.94745 0.89709 0.90657 0.90770 0.94596 0.91296 0.92217 0.89203 0.84962 0.83500 0.84065 0.87308 0.92797 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 9.11 71.98 0.66 -2.42 16 2 C -0.10 -3.05 2.62 -12.00 -0.03 -3.08 16 3 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 4 C -0.10 -2.57 4.37 28.61 0.13 -2.45 16 5 C -0.12 -3.54 5.51 29.76 0.16 -3.38 16 6 C -0.11 -3.14 5.07 30.23 0.15 -2.98 16 7 C 0.12 4.09 2.14 45.10 0.10 4.18 16 8 H 0.10 4.40 4.56 -2.39 -0.01 4.39 16 9 C -0.15 -4.56 9.32 71.98 0.67 -3.89 16 10 N -0.59 -22.87 1.83 -795.16 -1.46 -24.33 16 11 C 0.52 24.62 6.75 87.66 0.59 25.22 16 12 O -0.59 -30.97 14.74 -3.05 -0.04 -31.02 16 13 C 0.06 2.87 1.58 -13.03 -0.02 2.85 16 14 H 0.07 3.73 5.90 -2.39 -0.01 3.71 16 15 C -0.51 -26.40 6.12 25.60 0.16 -26.24 16 16 H 0.04 2.09 7.82 -2.91 -0.02 2.07 16 17 C 0.05 2.37 5.06 84.65 0.43 2.80 16 18 N -0.89 -46.51 12.79 21.45 0.27 -46.23 16 19 Si 0.94 41.46 29.54 68.60 2.03 43.48 16 20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 22 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 23 C -0.05 -2.41 4.49 -19.87 -0.09 -2.50 16 24 C -0.10 -4.96 8.06 22.27 0.18 -4.78 16 25 C -0.14 -5.47 10.05 22.27 0.22 -5.25 16 26 C -0.14 -4.95 10.05 22.27 0.22 -4.72 16 27 C -0.13 -4.78 10.05 22.27 0.22 -4.55 16 28 C -0.14 -6.30 9.67 22.27 0.22 -6.09 16 29 C 0.12 3.96 4.59 87.43 0.40 4.36 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.08 1.64 7.36 -2.39 -0.02 1.62 16 34 H 0.06 1.43 8.11 -2.39 -0.02 1.41 16 35 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.03 1.33 7.48 -2.39 -0.02 1.31 16 37 H 0.08 1.91 7.15 -2.38 -0.02 1.89 16 38 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.03 1.23 7.90 -2.39 -0.02 1.21 16 41 H 0.07 1.73 7.91 -2.39 -0.02 1.71 16 42 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16 43 H 0.09 4.58 7.79 -2.91 -0.02 4.55 16 44 H 0.13 4.39 8.06 -2.91 -0.02 4.36 16 45 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 46 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 47 H 0.11 4.71 7.96 -2.91 -0.02 4.69 16 48 H 0.05 1.93 7.35 -2.38 -0.02 1.92 16 49 H 0.09 2.42 7.85 -2.39 -0.02 2.41 16 Total: -1.00 -62.44 379.42 6.07 -56.37 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: 0.90 Total: 34.65 kcal Atomic # 6 Polarization: -37.29 SS G_CDS: 4.37 Total: -32.93 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: -1.18 Total: -70.56 kcal Atomic # 8 Polarization: -30.97 SS G_CDS: -0.04 Total: -31.02 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Total: -62.44 6.07 -56.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001538411267.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.220 kcal (2) G-P(sol) polarization free energy of solvation -62.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds