Wall clock time and date at job start Tue Mar 31 2020 10:40:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52991 * 1
3 3 H 1.09002 * 109.33353 * 2 1
4 4 C 1.47088 * 109.33179 * 240.34424 * 2 1 3
5 5 C 1.52573 * 114.33109 * 177.11308 * 4 2 1
6 6 C 1.50884 * 109.35247 * 85.01695 * 5 4 2
7 7 C 1.53946 * 110.09465 * 268.10892 * 6 5 4
8 8 H 1.08997 * 108.94752 * 279.88152 * 7 6 5
9 9 C 1.53008 * 108.94591 * 161.24873 * 7 6 5
10 10 N 1.47609 * 112.14048 * 40.57035 * 7 6 5
11 11 C 1.34773 * 118.64119 * 222.13130 * 10 7 6
12 12 O 1.21285 * 119.99906 * 174.09387 * 11 10 7
13 13 C 1.50702 * 120.00264 * 354.08812 * 11 10 7
14 14 H 1.08994 * 109.47162 * 318.58761 * 13 11 10
15 15 C 1.50706 * 109.46891 * 78.58461 * 13 11 10
16 16 H 1.07996 * 120.00110 * 33.56898 * 15 13 11
17 17 C 1.37877 * 119.99831 * 213.57449 * 15 13 11
18 18 N 1.31514 * 120.00157 * 4.98382 * 17 15 13
19 19 Si 1.86798 * 120.00137 * 184.98068 * 17 15 13
20 20 H 1.48500 * 109.46812 * 59.99911 * 19 17 15
21 21 H 1.48496 * 109.47347 * 179.97438 * 19 17 15
22 22 H 1.48504 * 109.47138 * 300.00470 * 19 17 15
23 23 C 1.50698 * 109.47295 * 198.58443 * 13 11 10
24 24 C 1.38236 * 119.99581 * 292.53091 * 23 13 11
25 25 C 1.38238 * 119.99523 * 179.76457 * 24 23 13
26 26 C 1.38237 * 120.00275 * 0.48980 * 25 24 23
27 27 C 1.38241 * 119.99823 * 359.79028 * 26 25 24
28 28 C 1.38233 * 119.99692 * 359.95298 * 27 26 25
29 29 C 1.44265 * 122.59765 * 42.07141 * 10 7 6
30 30 H 1.08992 * 109.47586 * 180.02562 * 1 2 3
31 31 H 1.09005 * 109.47427 * 300.00844 * 1 2 3
32 32 H 1.09002 * 109.47272 * 59.99969 * 1 2 3
33 33 H 1.09002 * 108.51542 * 298.37404 * 4 2 1
34 34 H 1.09001 * 108.51232 * 56.02021 * 4 2 1
35 35 H 1.09002 * 109.49373 * 204.98326 * 5 4 2
36 36 H 1.08993 * 109.48678 * 325.05434 * 5 4 2
37 37 H 1.09006 * 109.36842 * 28.30264 * 6 5 4
38 38 H 1.09003 * 109.36458 * 148.04449 * 6 5 4
39 39 H 1.09000 * 109.46293 * 60.00254 * 9 7 6
40 40 H 1.09003 * 109.46843 * 179.97438 * 9 7 6
41 41 H 1.08996 * 109.47040 * 300.00561 * 9 7 6
42 42 H 0.97001 * 120.00187 * 180.02562 * 18 17 15
43 43 H 1.07993 * 120.00394 * 359.97438 * 24 23 13
44 44 H 1.07998 * 120.00341 * 180.25115 * 25 24 23
45 45 H 1.07993 * 120.00323 * 179.76804 * 26 25 24
46 46 H 1.07992 * 119.99885 * 179.97438 * 27 26 25
47 47 H 1.08001 * 119.99908 * 180.02562 * 28 27 26
48 48 H 1.09008 * 109.18950 * 149.16839 * 29 10 7
49 49 H 1.09001 * 109.54300 * 29.35384 * 29 10 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8908 1.0285 0.0000
4 6 2.0168 -0.6867 -1.2061
5 6 3.5351 -0.6920 -1.3568
6 6 4.1108 -1.8497 -0.5791
7 6 4.4752 -1.3996 0.8473
8 1 5.4343 -0.8823 0.8209
9 6 4.6041 -2.6352 1.7404
10 7 3.4591 -0.4964 1.4223
11 6 3.8724 0.5827 2.1159
12 8 3.0642 1.3981 2.5071
13 6 5.3386 0.7763 2.4054
14 1 5.7833 -0.1792 2.6833
15 6 6.0269 1.3121 1.1764
16 1 5.5002 1.9792 0.5102
17 6 7.3289 0.9505 0.9026
18 7 7.9377 0.0628 1.6583
19 14 8.2283 1.7213 -0.5418
20 1 8.2965 3.1929 -0.3541
21 1 9.6043 1.1686 -0.6202
22 1 7.4991 1.4160 -1.7990
23 6 5.5018 1.7551 3.5395
24 6 5.1538 3.0813 3.3633
25 6 5.2989 3.9782 4.4052
26 6 5.8015 3.5511 5.6200
27 6 6.1549 2.2260 5.7944
28 6 6.0048 1.3281 4.7542
29 6 2.0425 -0.7230 1.2700
30 1 -0.3634 -1.0276 0.0005
31 1 -0.3634 0.5140 0.8899
32 1 -0.3634 0.5138 -0.8900
33 1 1.6679 -1.7191 -1.1813
34 1 1.5863 -0.1981 -2.0802
35 1 3.7957 -0.7959 -2.4101
36 1 3.9419 0.2430 -0.9718
37 1 3.3750 -2.6523 -0.5280
38 1 5.0072 -2.2127 -1.0818
39 1 5.3856 -3.2864 1.3490
40 1 4.8627 -2.3260 2.7532
41 1 3.6563 -3.1733 1.7551
42 1 8.8538 -0.1913 1.4658
43 1 4.7654 3.4160 2.4128
44 1 5.0233 5.0135 4.2689
45 1 5.9184 4.2525 6.4328
46 1 6.5480 1.8924 6.7433
47 1 6.2806 0.2928 4.8905
48 1 1.5213 -0.3336 2.1446
49 1 1.8518 -1.7924 1.1807
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001538411267.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:40:29
Heat of formation + Delta-G solvation = -43.148286 kcal
Electronic energy + Delta-G solvation = -28450.154305 eV
Core-core repulsion = 24954.508108 eV
Total energy + Delta-G solvation = -3495.646197 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-41.51596 -39.83535 -38.44752 -36.23709 -35.23077 -34.05938 -32.83913 -31.54518
-30.85248 -29.45065 -27.23033 -27.13126 -25.39260 -23.76052 -23.21301 -22.62227
-21.63424 -21.10694 -19.33259 -18.53325 -17.98376 -17.50942 -17.03557 -16.48776
-16.02612 -15.73715 -15.65784 -15.41906 -14.92810 -14.87468 -14.71570 -14.23118
-14.07321 -13.98587 -13.73032 -13.43822 -13.36394 -13.27916 -13.15855 -12.87744
-12.81600 -12.73734 -12.62624 -12.29814 -12.14909 -12.04292 -11.91944 -11.69727
-11.59888 -11.41113 -11.26900 -11.24407 -11.07622 -10.65889 -10.26393 -9.56632
-9.35418 -9.24457 -8.19891 -6.27360 0.73584 0.79214 1.39392 1.42344
1.47815 1.98605 2.40992 2.43371 3.08577 3.24342 3.72614 3.88952
3.98909 4.08379 4.18743 4.21374 4.28976 4.30451 4.43062 4.49014
4.55717 4.59887 4.62915 4.73787 4.75498 4.77706 4.86912 4.93633
4.95218 4.97159 5.01623 5.03962 5.11090 5.15459 5.24351 5.30647
5.33108 5.36205 5.41604 5.45808 5.48106 5.57071 5.59751 5.66202
5.77009 5.83045 5.97387 6.11127 6.26149 6.39491 6.67445 6.75133
7.35809 7.59420 8.87268
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.010938 B = 0.006424 C = 0.005004
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2559.206103 B = 4357.296789 C = 5593.996576
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.103 4.103
3 H 0.030 0.970
4 C -0.102 4.102
5 C -0.119 4.119
6 C -0.111 4.111
7 C 0.115 3.885
8 H 0.100 0.900
9 C -0.149 4.149
10 N -0.593 5.593
11 C 0.520 3.480
12 O -0.595 6.595
13 C 0.058 3.942
14 H 0.072 0.928
15 C -0.506 4.506
16 H 0.038 0.962
17 C 0.046 3.954
18 N -0.895 5.895
19 Si 0.937 3.063
20 H -0.283 1.283
21 H -0.277 1.277
22 H -0.266 1.266
23 C -0.049 4.049
24 C -0.104 4.104
25 C -0.139 4.139
26 C -0.141 4.141
27 C -0.129 4.129
28 C -0.142 4.142
29 C 0.123 3.877
30 H 0.075 0.925
31 H 0.045 0.955
32 H 0.062 0.938
33 H 0.080 0.920
34 H 0.061 0.939
35 H 0.071 0.929
36 H 0.034 0.966
37 H 0.084 0.916
38 H 0.075 0.925
39 H 0.073 0.927
40 H 0.035 0.965
41 H 0.068 0.932
42 H 0.268 0.732
43 H 0.090 0.910
44 H 0.132 0.868
45 H 0.147 0.853
46 H 0.142 0.858
47 H 0.109 0.891
48 H 0.054 0.946
49 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.680 -5.371 -1.863 9.555
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.123 4.123
3 H 0.049 0.951
4 C -0.139 4.139
5 C -0.157 4.157
6 C -0.149 4.149
7 C 0.013 3.987
8 H 0.118 0.882
9 C -0.207 4.207
10 N -0.323 5.323
11 C 0.311 3.689
12 O -0.477 6.477
13 C 0.037 3.963
14 H 0.090 0.910
15 C -0.544 4.544
16 H 0.056 0.944
17 C -0.156 4.156
18 N -0.531 5.531
19 Si 0.763 3.237
20 H -0.209 1.209
21 H -0.202 1.202
22 H -0.191 1.191
23 C -0.050 4.050
24 C -0.122 4.122
25 C -0.156 4.156
26 C -0.159 4.159
27 C -0.147 4.147
28 C -0.160 4.160
29 C -0.001 4.001
30 H 0.094 0.906
31 H 0.064 0.936
32 H 0.081 0.919
33 H 0.098 0.902
34 H 0.080 0.920
35 H 0.089 0.911
36 H 0.053 0.947
37 H 0.103 0.897
38 H 0.093 0.907
39 H 0.092 0.908
40 H 0.054 0.946
41 H 0.087 0.913
42 H 0.078 0.922
43 H 0.108 0.892
44 H 0.150 0.850
45 H 0.165 0.835
46 H 0.159 0.841
47 H 0.127 0.873
48 H 0.072 0.928
49 H 0.112 0.888
Dipole moment (debyes) X Y Z Total
from point charges -7.929 -5.117 -1.660 9.582
hybrid contribution 0.858 0.740 -0.755 1.362
sum -7.070 -4.377 -2.415 8.659
Atomic orbital electron populations
1.21707 0.92926 1.02820 1.01684 1.20699 0.97055 0.98618 0.95908
0.95117 1.20434 0.94837 1.01621 0.97012 1.21054 0.96198 0.98482
0.99926 1.21694 1.01868 0.98112 0.93258 1.21941 0.92577 0.90874
0.93315 0.88169 1.22089 1.02318 0.97300 0.99040 1.47601 1.06435
1.25424 1.52819 1.21541 0.91874 0.79875 0.75649 1.90516 1.57347
1.44231 1.55565 1.18001 0.88381 0.96502 0.93456 0.91031 1.20457
0.97975 1.29198 1.06751 0.94399 1.25352 0.97537 0.94523 0.98216
1.69939 1.13088 1.30670 1.39442 0.85927 0.78284 0.78760 0.80724
1.20925 1.20228 1.19132 1.20301 0.94914 0.95441 0.94342 1.20843
0.99402 0.93751 0.98244 1.21330 1.00863 0.99668 0.93783 1.21270
1.00826 0.96226 0.97587 1.21304 1.00715 0.93793 0.98892 1.21152
1.01587 0.99818 0.93482 1.21416 0.80841 1.00561 0.97248 0.90600
0.93589 0.91888 0.90189 0.92020 0.91077 0.94745 0.89709 0.90657
0.90770 0.94596 0.91296 0.92217 0.89203 0.84962 0.83500 0.84065
0.87308 0.92797 0.88785
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.07 9.11 71.98 0.66 -2.42 16
2 C -0.10 -3.05 2.62 -12.00 -0.03 -3.08 16
3 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16
4 C -0.10 -2.57 4.37 28.61 0.13 -2.45 16
5 C -0.12 -3.54 5.51 29.76 0.16 -3.38 16
6 C -0.11 -3.14 5.07 30.23 0.15 -2.98 16
7 C 0.12 4.09 2.14 45.10 0.10 4.18 16
8 H 0.10 4.40 4.56 -2.39 -0.01 4.39 16
9 C -0.15 -4.56 9.32 71.98 0.67 -3.89 16
10 N -0.59 -22.87 1.83 -795.16 -1.46 -24.33 16
11 C 0.52 24.62 6.75 87.66 0.59 25.22 16
12 O -0.59 -30.97 14.74 -3.05 -0.04 -31.02 16
13 C 0.06 2.87 1.58 -13.03 -0.02 2.85 16
14 H 0.07 3.73 5.90 -2.39 -0.01 3.71 16
15 C -0.51 -26.40 6.12 25.60 0.16 -26.24 16
16 H 0.04 2.09 7.82 -2.91 -0.02 2.07 16
17 C 0.05 2.37 5.06 84.65 0.43 2.80 16
18 N -0.89 -46.51 12.79 21.45 0.27 -46.23 16
19 Si 0.94 41.46 29.54 68.60 2.03 43.48 16
20 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16
21 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16
22 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16
23 C -0.05 -2.41 4.49 -19.87 -0.09 -2.50 16
24 C -0.10 -4.96 8.06 22.27 0.18 -4.78 16
25 C -0.14 -5.47 10.05 22.27 0.22 -5.25 16
26 C -0.14 -4.95 10.05 22.27 0.22 -4.72 16
27 C -0.13 -4.78 10.05 22.27 0.22 -4.55 16
28 C -0.14 -6.30 9.67 22.27 0.22 -6.09 16
29 C 0.12 3.96 4.59 87.43 0.40 4.36 16
30 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16
31 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16
32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16
33 H 0.08 1.64 7.36 -2.39 -0.02 1.62 16
34 H 0.06 1.43 8.11 -2.39 -0.02 1.41 16
35 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16
36 H 0.03 1.33 7.48 -2.39 -0.02 1.31 16
37 H 0.08 1.91 7.15 -2.38 -0.02 1.89 16
38 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16
39 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16
40 H 0.03 1.23 7.90 -2.39 -0.02 1.21 16
41 H 0.07 1.73 7.91 -2.39 -0.02 1.71 16
42 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16
43 H 0.09 4.58 7.79 -2.91 -0.02 4.55 16
44 H 0.13 4.39 8.06 -2.91 -0.02 4.36 16
45 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16
46 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16
47 H 0.11 4.71 7.96 -2.91 -0.02 4.69 16
48 H 0.05 1.93 7.35 -2.38 -0.02 1.92 16
49 H 0.09 2.42 7.85 -2.39 -0.02 2.41 16
Total: -1.00 -62.44 379.42 6.07 -56.37
By element:
Atomic # 1 Polarization: 33.75 SS G_CDS: 0.90 Total: 34.65 kcal
Atomic # 6 Polarization: -37.29 SS G_CDS: 4.37 Total: -32.93 kcal
Atomic # 7 Polarization: -69.38 SS G_CDS: -1.18 Total: -70.56 kcal
Atomic # 8 Polarization: -30.97 SS G_CDS: -0.04 Total: -31.02 kcal
Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal
Total: -62.44 6.07 -56.37 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001538411267.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.220 kcal
(2) G-P(sol) polarization free energy of solvation -62.440 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.220 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.071 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.368 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.148 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds