Wall clock time and date at job start Tue Mar 31 2020 11:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46885 * 2 1 4 4 N 1.46498 * 109.47114 * 120.00093 * 2 1 3 5 5 C 1.34778 * 120.00033 * 274.99826 * 4 2 1 6 6 O 1.21283 * 119.99381 * 0.02562 * 5 4 2 7 7 C 1.50695 * 120.00010 * 179.72421 * 5 4 2 8 8 H 1.09003 * 109.47392 * 324.63790 * 7 5 4 9 9 C 1.50696 * 109.47017 * 84.63461 * 7 5 4 10 10 H 1.08009 * 120.00110 * 54.19848 * 9 7 5 11 11 C 1.37880 * 120.00014 * 234.19642 * 9 7 5 12 12 N 1.31519 * 119.99631 * 172.56364 * 11 9 7 13 13 Si 1.86792 * 120.00080 * 352.56250 * 11 9 7 14 14 H 1.48500 * 109.47228 * 84.89196 * 13 11 9 15 15 H 1.48501 * 109.47428 * 204.89133 * 13 11 9 16 16 H 1.48502 * 109.47324 * 324.89517 * 13 11 9 17 17 C 1.50703 * 109.47206 * 204.63312 * 7 5 4 18 18 C 1.38238 * 119.99965 * 291.79300 * 17 7 5 19 19 C 1.38232 * 119.99702 * 179.78713 * 18 17 7 20 20 C 1.38234 * 120.00203 * 0.43602 * 19 18 17 21 21 C 1.38232 * 119.99939 * 359.81656 * 20 19 18 22 22 C 1.38237 * 119.99776 * 112.05988 * 17 7 5 23 23 C 1.53004 * 109.46698 * 239.99692 * 2 1 3 24 24 C 1.53002 * 109.46700 * 179.97438 * 23 2 1 25 25 C 1.52998 * 109.47165 * 180.02562 * 24 23 2 26 26 C 1.52999 * 109.47250 * 60.00260 * 25 24 23 27 27 C 1.53005 * 109.46950 * 300.00481 * 26 25 24 28 28 C 1.52998 * 109.47537 * 59.99695 * 27 26 25 29 29 H 1.08997 * 109.46793 * 60.00496 * 1 2 3 30 30 H 1.09002 * 109.47302 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47167 * 300.00104 * 1 2 3 32 32 H 0.96999 * 120.00266 * 94.99712 * 4 2 1 33 33 H 0.96999 * 119.99646 * 180.02562 * 12 11 9 34 34 H 1.07995 * 119.99746 * 359.97438 * 18 17 7 35 35 H 1.08005 * 119.99949 * 180.27306 * 19 18 17 36 36 H 1.08003 * 120.00148 * 179.83237 * 20 19 18 37 37 H 1.08004 * 120.00215 * 179.97438 * 21 20 19 38 38 H 1.07995 * 120.00208 * 359.97438 * 22 17 7 39 39 H 1.08996 * 109.47704 * 299.99807 * 23 2 1 40 40 H 1.09002 * 109.47605 * 300.00376 * 24 23 2 41 41 H 1.09001 * 109.47101 * 60.00671 * 24 23 2 42 42 H 1.09002 * 109.47047 * 300.00572 * 25 24 23 43 43 H 1.08999 * 109.47112 * 180.02562 * 25 24 23 44 44 H 1.08994 * 109.47809 * 179.97438 * 26 25 24 45 45 H 1.09002 * 109.46840 * 60.00185 * 26 25 24 46 46 H 1.08996 * 109.46691 * 299.99422 * 27 26 25 47 47 H 1.09006 * 109.46641 * 179.97438 * 27 26 25 48 48 H 1.08996 * 109.47115 * 180.02562 * 28 27 26 49 49 H 1.09002 * 109.47047 * 59.99809 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8583 1.1584 2.4116 7 6 2.6435 -0.7302 3.5891 8 1 2.2707 -1.7544 3.5919 9 6 4.1504 -0.7443 3.5881 10 1 4.6991 0.1809 3.4908 11 6 4.8288 -1.9384 3.7115 12 7 6.1353 -1.9706 3.5645 13 14 3.8921 -3.5101 4.0873 14 1 3.3776 -4.0942 2.8227 15 1 4.8003 -4.4818 4.7478 16 1 2.7535 -3.2041 4.9903 17 6 2.1487 -0.0119 4.8180 18 6 2.6285 1.2483 5.1223 19 6 2.1713 1.9089 6.2471 20 6 1.2411 1.3056 7.0727 21 6 0.7652 0.0433 6.7714 22 6 1.2192 -0.6157 5.6441 23 6 2.0400 -0.7214 -1.2493 24 6 3.5700 -0.7208 -1.2496 25 6 4.0800 -1.4415 -2.4991 26 6 3.5695 -0.7202 -3.7481 27 6 2.0395 -0.7206 -3.7477 28 6 1.5295 0.0002 -2.4982 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.2490 -1.6318 1.1526 33 1 6.6125 -2.8107 3.6509 34 1 3.3582 1.7179 4.4794 35 1 2.5428 2.8954 6.4825 36 1 0.8859 1.8207 7.9531 37 1 0.0387 -0.4283 7.4166 38 1 0.8472 -1.6018 5.4086 39 1 1.6767 -1.7490 -1.2493 40 1 3.9330 0.3070 -1.2498 41 1 3.9337 -1.2344 -0.3596 42 1 3.7169 -2.4693 -2.4993 43 1 5.1700 -1.4415 -2.4991 44 1 3.9332 -1.2333 -4.6383 45 1 3.9326 0.3076 -3.7478 46 1 1.6765 -1.7483 -3.7479 47 1 1.6759 -0.2062 -4.6373 48 1 0.4395 -0.0006 -2.4978 49 1 1.8925 1.0279 -2.4980 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584409681.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:16 Heat of formation + Delta-G solvation = -50.621592 kcal Electronic energy + Delta-G solvation = -27148.851811 eV Core-core repulsion = 23652.881547 eV Total energy + Delta-G solvation = -3495.970264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -39.67126 -38.71975 -37.64904 -34.81737 -33.58388 -31.63426 -31.26935 -30.55051 -30.11876 -28.68541 -27.59771 -24.13787 -23.21445 -22.34963 -21.83360 -21.26026 -20.15374 -19.89049 -19.10113 -17.10922 -16.44400 -16.10312 -15.62125 -15.17521 -14.64390 -14.46429 -14.17954 -14.06718 -13.87204 -13.61147 -13.41223 -13.04620 -12.96005 -12.79311 -12.61811 -12.45866 -12.18503 -12.01158 -11.94451 -11.67116 -11.39004 -11.30185 -11.12184 -11.06683 -11.04331 -10.76531 -10.47672 -10.32755 -10.14640 -10.02174 -9.95479 -9.91799 -9.50229 -8.99980 -8.64890 -8.36823 -8.12343 -7.80062 -6.30820 -4.32135 2.15130 2.22397 3.08871 3.22464 3.23953 3.68914 3.93784 4.19780 4.63940 4.64980 4.78657 4.83085 5.04964 5.14299 5.29486 5.32784 5.49227 5.53273 5.55312 5.58049 5.59822 5.61422 5.70255 5.71754 5.76295 5.83506 5.95235 5.99769 6.05471 6.06154 6.13637 6.19868 6.20485 6.21429 6.28636 6.32529 6.41010 6.42374 6.49804 6.56941 6.63814 6.75236 6.87563 7.17638 7.20586 7.27175 7.31324 7.61375 7.80749 8.19017 8.37229 8.74057 9.19362 9.27210 10.80600 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013232 B = 0.004500 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.651919 B = 6221.186204 C = 7464.286509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.083 0.917 4 N -0.729 5.729 5 C 0.534 3.466 6 O -0.559 6.559 7 C 0.032 3.968 8 H 0.057 0.943 9 C -0.503 4.503 10 H 0.083 0.917 11 C 0.082 3.918 12 N -0.880 5.880 13 Si 0.865 3.135 14 H -0.272 1.272 15 H -0.284 1.284 16 H -0.260 1.260 17 C -0.031 4.031 18 C -0.068 4.068 19 C -0.132 4.132 20 C -0.142 4.142 21 C -0.132 4.132 22 C -0.134 4.134 23 C -0.092 4.092 24 C -0.116 4.116 25 C -0.119 4.119 26 C -0.120 4.120 27 C -0.117 4.117 28 C -0.112 4.112 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.396 0.604 33 H 0.269 0.731 34 H 0.121 0.879 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.071 0.929 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.059 0.941 47 H 0.058 0.942 48 H 0.065 0.935 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.095 -0.021 -9.020 12.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.042 3.958 3 H 0.101 0.899 4 N -0.380 5.380 5 C 0.324 3.676 6 O -0.438 6.438 7 C 0.011 3.989 8 H 0.075 0.925 9 C -0.540 4.540 10 H 0.101 0.899 11 C -0.122 4.122 12 N -0.516 5.516 13 Si 0.691 3.309 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.185 1.185 17 C -0.032 4.032 18 C -0.086 4.086 19 C -0.150 4.150 20 C -0.160 4.160 21 C -0.150 4.150 22 C -0.152 4.152 23 C -0.111 4.111 24 C -0.154 4.154 25 C -0.156 4.156 26 C -0.157 4.157 27 C -0.155 4.155 28 C -0.150 4.150 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.230 0.770 33 H 0.079 0.921 34 H 0.139 0.861 35 H 0.129 0.871 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.076 0.924 48 H 0.083 0.917 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.107 0.710 -8.976 12.807 hybrid contribution -0.122 -1.463 0.252 1.490 sum -9.229 -0.753 -8.725 12.723 Atomic orbital electron populations 1.22231 0.96230 1.01593 1.02037 1.20828 0.93170 0.97596 0.84198 0.89914 1.46037 1.68602 1.13895 1.09505 1.21389 0.73903 0.87371 0.84985 1.90561 1.50855 1.16646 1.85690 1.18347 0.98528 0.94849 0.87219 0.92476 1.20528 0.85928 0.95831 1.51753 0.89864 1.25036 0.94845 0.98504 0.93828 1.69872 1.07162 1.27295 1.47258 0.87019 0.80692 0.83528 0.79629 1.19735 1.20958 1.18459 1.20015 0.92753 0.94053 0.96421 1.20935 0.98049 0.94249 0.95413 1.21062 0.98480 0.99628 0.95837 1.20875 0.99414 0.95913 0.99841 1.20879 1.00883 0.95565 0.97660 1.21007 0.98465 0.99681 0.96080 1.21422 0.96227 0.99649 0.93764 1.21580 0.94268 1.01342 0.98178 1.21527 1.00334 0.99196 0.94559 1.21548 0.95601 1.00778 0.97795 1.21516 0.95837 1.00564 0.97544 1.21600 1.00274 0.99487 0.93673 0.92056 0.92925 0.92192 0.77030 0.92127 0.86085 0.87116 0.87364 0.87303 0.87308 0.91086 0.91934 0.90683 0.92276 0.92038 0.92531 0.92109 0.92191 0.92351 0.91679 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.19 9.13 37.16 0.34 -1.86 16 2 C 0.15 2.23 2.16 -67.93 -0.15 2.08 16 3 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 4 N -0.73 -13.06 4.38 -53.80 -0.24 -13.29 16 5 C 0.53 11.58 6.88 -10.99 -0.08 11.51 16 6 O -0.56 -13.33 14.92 5.55 0.08 -13.25 16 7 C 0.03 0.74 2.20 -94.08 -0.21 0.53 16 8 H 0.06 1.24 4.70 -51.93 -0.24 1.00 16 9 C -0.50 -13.13 8.22 -34.44 -0.28 -13.41 16 10 H 0.08 2.44 7.69 -52.48 -0.40 2.03 16 11 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 12 N -0.88 -24.87 13.96 55.43 0.77 -24.09 16 13 Si 0.86 19.46 26.87 -169.99 -4.57 14.89 16 14 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 15 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 16 H -0.26 -5.69 6.92 56.52 0.39 -5.30 16 17 C -0.03 -0.70 4.54 -104.62 -0.48 -1.18 16 18 C -0.07 -1.50 8.06 -39.58 -0.32 -1.82 16 19 C -0.13 -2.49 10.05 -39.58 -0.40 -2.89 16 20 C -0.14 -2.46 10.05 -39.58 -0.40 -2.86 16 21 C -0.13 -2.34 10.05 -39.58 -0.40 -2.73 16 22 C -0.13 -2.69 9.67 -39.58 -0.38 -3.07 16 23 C -0.09 -1.15 1.83 -90.61 -0.17 -1.31 16 24 C -0.12 -1.61 5.05 -26.73 -0.13 -1.75 16 25 C -0.12 -1.40 5.92 -26.73 -0.16 -1.56 16 26 C -0.12 -1.22 5.92 -26.73 -0.16 -1.37 16 27 C -0.12 -1.12 5.92 -26.73 -0.16 -1.27 16 28 C -0.11 -1.19 4.85 -26.73 -0.13 -1.32 16 29 H 0.06 0.70 6.43 -51.93 -0.33 0.36 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.40 6.69 8.39 -40.82 -0.34 6.35 16 33 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.12 2.81 7.42 -52.49 -0.39 2.42 16 35 H 0.11 1.79 8.06 -52.48 -0.42 1.37 16 36 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 37 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 38 H 0.11 2.01 7.96 -52.49 -0.42 1.60 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 1.22 7.45 -51.93 -0.39 0.84 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.06 0.63 6.43 -51.93 -0.33 0.30 16 49 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 383.30 15.07 5.78 5.78 Total: -1.00 -29.27 383.30 -10.23 -39.50 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -8.31 Total: 12.68 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -3.74 Total: -22.20 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.54 Total: -37.39 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.08 Total: -13.25 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.57 Total: 14.89 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.27 -10.23 -39.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584409681.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.126 kcal (2) G-P(sol) polarization free energy of solvation -29.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds