Wall clock time and date at job start Tue Mar 31 2020 11:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46885 * 2 1 4 4 N 1.46498 * 109.47114 * 120.00093 * 2 1 3 5 5 C 1.34778 * 120.00033 * 274.99826 * 4 2 1 6 6 O 1.21283 * 119.99381 * 0.02562 * 5 4 2 7 7 C 1.50695 * 120.00010 * 179.72421 * 5 4 2 8 8 H 1.09003 * 109.47392 * 324.63790 * 7 5 4 9 9 C 1.50696 * 109.47017 * 84.63461 * 7 5 4 10 10 H 1.08009 * 120.00110 * 54.19848 * 9 7 5 11 11 C 1.37880 * 120.00014 * 234.19642 * 9 7 5 12 12 N 1.31519 * 119.99631 * 172.56364 * 11 9 7 13 13 Si 1.86792 * 120.00080 * 352.56250 * 11 9 7 14 14 H 1.48500 * 109.47228 * 84.89196 * 13 11 9 15 15 H 1.48501 * 109.47428 * 204.89133 * 13 11 9 16 16 H 1.48502 * 109.47324 * 324.89517 * 13 11 9 17 17 C 1.50703 * 109.47206 * 204.63312 * 7 5 4 18 18 C 1.38238 * 119.99965 * 291.79300 * 17 7 5 19 19 C 1.38232 * 119.99702 * 179.78713 * 18 17 7 20 20 C 1.38234 * 120.00203 * 0.43602 * 19 18 17 21 21 C 1.38232 * 119.99939 * 359.81656 * 20 19 18 22 22 C 1.38237 * 119.99776 * 112.05988 * 17 7 5 23 23 C 1.53004 * 109.46698 * 239.99692 * 2 1 3 24 24 C 1.53002 * 109.46700 * 179.97438 * 23 2 1 25 25 C 1.52998 * 109.47165 * 180.02562 * 24 23 2 26 26 C 1.52999 * 109.47250 * 60.00260 * 25 24 23 27 27 C 1.53005 * 109.46950 * 300.00481 * 26 25 24 28 28 C 1.52998 * 109.47537 * 59.99695 * 27 26 25 29 29 H 1.08997 * 109.46793 * 60.00496 * 1 2 3 30 30 H 1.09002 * 109.47302 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47167 * 300.00104 * 1 2 3 32 32 H 0.96999 * 120.00266 * 94.99712 * 4 2 1 33 33 H 0.96999 * 119.99646 * 180.02562 * 12 11 9 34 34 H 1.07995 * 119.99746 * 359.97438 * 18 17 7 35 35 H 1.08005 * 119.99949 * 180.27306 * 19 18 17 36 36 H 1.08003 * 120.00148 * 179.83237 * 20 19 18 37 37 H 1.08004 * 120.00215 * 179.97438 * 21 20 19 38 38 H 1.07995 * 120.00208 * 359.97438 * 22 17 7 39 39 H 1.08996 * 109.47704 * 299.99807 * 23 2 1 40 40 H 1.09002 * 109.47605 * 300.00376 * 24 23 2 41 41 H 1.09001 * 109.47101 * 60.00671 * 24 23 2 42 42 H 1.09002 * 109.47047 * 300.00572 * 25 24 23 43 43 H 1.08999 * 109.47112 * 180.02562 * 25 24 23 44 44 H 1.08994 * 109.47809 * 179.97438 * 26 25 24 45 45 H 1.09002 * 109.46840 * 60.00185 * 26 25 24 46 46 H 1.08996 * 109.46691 * 299.99422 * 27 26 25 47 47 H 1.09006 * 109.46641 * 179.97438 * 27 26 25 48 48 H 1.08996 * 109.47115 * 180.02562 * 28 27 26 49 49 H 1.09002 * 109.47047 * 59.99809 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.8583 1.1584 2.4116 7 6 2.6435 -0.7302 3.5891 8 1 2.2707 -1.7544 3.5919 9 6 4.1504 -0.7443 3.5881 10 1 4.6991 0.1809 3.4908 11 6 4.8288 -1.9384 3.7115 12 7 6.1353 -1.9706 3.5645 13 14 3.8921 -3.5101 4.0873 14 1 3.3776 -4.0942 2.8227 15 1 4.8003 -4.4818 4.7478 16 1 2.7535 -3.2041 4.9903 17 6 2.1487 -0.0119 4.8180 18 6 2.6285 1.2483 5.1223 19 6 2.1713 1.9089 6.2471 20 6 1.2411 1.3056 7.0727 21 6 0.7652 0.0433 6.7714 22 6 1.2192 -0.6157 5.6441 23 6 2.0400 -0.7214 -1.2493 24 6 3.5700 -0.7208 -1.2496 25 6 4.0800 -1.4415 -2.4991 26 6 3.5695 -0.7202 -3.7481 27 6 2.0395 -0.7206 -3.7477 28 6 1.5295 0.0002 -2.4982 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 2.2490 -1.6318 1.1526 33 1 6.6125 -2.8107 3.6509 34 1 3.3582 1.7179 4.4794 35 1 2.5428 2.8954 6.4825 36 1 0.8859 1.8207 7.9531 37 1 0.0387 -0.4283 7.4166 38 1 0.8472 -1.6018 5.4086 39 1 1.6767 -1.7490 -1.2493 40 1 3.9330 0.3070 -1.2498 41 1 3.9337 -1.2344 -0.3596 42 1 3.7169 -2.4693 -2.4993 43 1 5.1700 -1.4415 -2.4991 44 1 3.9332 -1.2333 -4.6383 45 1 3.9326 0.3076 -3.7478 46 1 1.6765 -1.7483 -3.7479 47 1 1.6759 -0.2062 -4.6373 48 1 0.4395 -0.0006 -2.4978 49 1 1.8925 1.0279 -2.4980 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584409681.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:14 Heat of formation + Delta-G solvation = -65.904194 kcal Electronic energy + Delta-G solvation = -27149.514514 eV Core-core repulsion = 23652.881547 eV Total energy + Delta-G solvation = -3496.632967 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.17490 -40.01903 -39.08005 -36.13619 -35.49034 -33.44919 -32.56622 -31.63203 -31.55860 -29.85462 -29.21153 -25.80301 -24.58610 -23.37039 -23.30940 -22.63851 -21.44642 -21.15688 -20.45521 -19.10525 -17.97651 -17.69199 -17.00611 -16.50325 -16.19861 -15.88911 -15.47607 -15.38269 -15.05548 -14.94890 -14.83027 -14.57317 -14.36706 -14.16563 -14.13276 -13.75193 -13.64964 -13.35707 -13.14095 -12.91779 -12.88258 -12.76047 -12.44559 -12.33278 -12.07377 -11.98952 -11.91797 -11.78068 -11.70102 -11.41803 -11.32105 -11.01485 -10.90834 -10.87783 -10.49610 -9.88850 -9.64435 -9.37078 -8.36604 -6.44082 0.63128 0.70201 1.30501 1.38107 1.46866 1.93530 2.28811 2.46628 2.99659 3.15404 3.59959 3.81799 3.86315 4.06547 4.18124 4.21324 4.24456 4.30190 4.36499 4.40212 4.41654 4.46362 4.49692 4.52558 4.63023 4.65461 4.69431 4.75527 4.82930 4.86982 4.88874 4.97369 5.09515 5.16566 5.20588 5.26259 5.27081 5.30373 5.31124 5.32743 5.39167 5.44406 5.50257 5.60250 5.69227 5.73509 5.77189 5.94984 6.19493 6.30862 6.57820 6.74250 7.19182 7.51036 8.78958 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013232 B = 0.004500 C = 0.003750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.651919 B = 6221.186204 C = 7464.286509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.143 3.857 3 H 0.052 0.948 4 N -0.719 5.719 5 C 0.530 3.470 6 O -0.589 6.589 7 C 0.035 3.965 8 H 0.071 0.929 9 C -0.503 4.503 10 H 0.027 0.973 11 C 0.030 3.970 12 N -0.931 5.931 13 Si 0.928 3.072 14 H -0.243 1.243 15 H -0.286 1.286 16 H -0.244 1.244 17 C -0.063 4.063 18 C -0.101 4.101 19 C -0.137 4.137 20 C -0.134 4.134 21 C -0.124 4.124 22 C -0.146 4.146 23 C -0.081 4.081 24 C -0.116 4.116 25 C -0.116 4.116 26 C -0.118 4.118 27 C -0.113 4.113 28 C -0.110 4.110 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.033 0.967 32 H 0.402 0.598 33 H 0.271 0.729 34 H 0.084 0.916 35 H 0.132 0.868 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.126 0.874 39 H 0.087 0.913 40 H 0.041 0.959 41 H 0.042 0.958 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.073 0.927 45 H 0.053 0.947 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.083 0.917 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.626 -1.953 -9.182 15.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.039 3.961 3 H 0.071 0.929 4 N -0.369 5.369 5 C 0.319 3.681 6 O -0.469 6.469 7 C 0.014 3.986 8 H 0.089 0.911 9 C -0.540 4.540 10 H 0.045 0.955 11 C -0.170 4.170 12 N -0.569 5.569 13 Si 0.750 3.250 14 H -0.166 1.166 15 H -0.212 1.212 16 H -0.168 1.168 17 C -0.064 4.064 18 C -0.119 4.119 19 C -0.155 4.155 20 C -0.152 4.152 21 C -0.142 4.142 22 C -0.164 4.164 23 C -0.100 4.100 24 C -0.154 4.154 25 C -0.153 4.153 26 C -0.156 4.156 27 C -0.150 4.150 28 C -0.147 4.147 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.237 0.763 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.150 0.850 36 H 0.169 0.831 37 H 0.169 0.831 38 H 0.143 0.857 39 H 0.106 0.894 40 H 0.060 0.940 41 H 0.061 0.939 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.091 0.909 45 H 0.072 0.928 46 H 0.089 0.911 47 H 0.095 0.905 48 H 0.102 0.898 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.658 -1.224 -9.175 15.681 hybrid contribution 1.030 -0.704 0.339 1.292 sum -11.628 -1.928 -8.836 14.731 Atomic orbital electron populations 1.22150 0.94122 1.02785 1.02087 1.21033 0.94739 0.96144 0.84165 0.92940 1.45998 1.67423 1.14121 1.09369 1.21246 0.74008 0.87015 0.85856 1.90533 1.52374 1.17765 1.86266 1.18266 0.95982 0.95879 0.88506 0.91106 1.20439 0.87979 0.93856 1.51760 0.95496 1.25889 0.95583 1.02208 0.93282 1.70028 1.09267 1.28444 1.49154 0.86008 0.79601 0.78531 0.80907 1.16640 1.21232 1.16757 1.20063 0.94793 0.94629 0.96884 1.20841 0.98923 0.95208 0.96931 1.21353 0.98702 1.00505 0.94906 1.21361 0.97690 0.95850 1.00251 1.21375 1.00537 0.95430 0.96850 1.21276 0.98060 1.00565 0.96537 1.21373 0.94769 1.00443 0.93389 1.21537 0.95754 0.99949 0.98148 1.21506 0.99907 0.99650 0.94269 1.21546 0.96482 1.00294 0.97238 1.21508 0.94871 1.01227 0.97392 1.21605 1.01310 0.98853 0.92972 0.89373 0.91055 0.94776 0.76292 0.91984 0.89770 0.85036 0.83124 0.83120 0.85653 0.89431 0.94028 0.93940 0.91246 0.92890 0.90856 0.92793 0.91120 0.90533 0.89840 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.93 9.13 71.98 0.66 -3.27 16 2 C 0.14 4.41 2.16 44.99 0.10 4.50 16 3 H 0.05 1.94 7.58 -2.39 -0.02 1.92 16 4 N -0.72 -26.54 4.38 -442.53 -1.94 -28.48 16 5 C 0.53 24.21 6.88 87.66 0.60 24.81 16 6 O -0.59 -29.99 14.92 -3.04 -0.05 -30.04 16 7 C 0.04 1.67 2.20 -13.03 -0.03 1.64 16 8 H 0.07 3.06 4.70 -2.39 -0.01 3.05 16 9 C -0.50 -28.12 8.22 25.60 0.21 -27.91 16 10 H 0.03 1.75 7.69 -2.91 -0.02 1.73 16 11 C 0.03 1.67 5.47 84.65 0.46 2.13 16 12 N -0.93 -55.49 13.96 21.45 0.30 -55.19 16 13 Si 0.93 39.94 26.87 68.60 1.84 41.79 16 14 H -0.24 -9.28 7.11 99.48 0.71 -8.57 16 15 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 16 H -0.24 -9.83 6.92 99.48 0.69 -9.14 16 17 C -0.06 -2.87 4.54 -19.86 -0.09 -2.96 16 18 C -0.10 -4.66 8.06 22.27 0.18 -4.48 16 19 C -0.14 -5.12 10.05 22.27 0.22 -4.89 16 20 C -0.13 -4.20 10.05 22.27 0.22 -3.98 16 21 C -0.12 -3.95 10.05 22.27 0.22 -3.73 16 22 C -0.15 -5.60 9.67 22.27 0.22 -5.39 16 23 C -0.08 -1.96 1.83 -10.79 -0.02 -1.98 16 24 C -0.12 -3.36 5.05 30.59 0.15 -3.21 16 25 C -0.12 -2.69 5.92 30.59 0.18 -2.51 16 26 C -0.12 -2.20 5.92 30.60 0.18 -2.02 16 27 C -0.11 -1.80 5.92 30.60 0.18 -1.62 16 28 C -0.11 -2.09 4.85 30.59 0.15 -1.94 16 29 H 0.09 1.78 6.43 -2.39 -0.02 1.77 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.40 13.68 8.39 -92.71 -0.78 12.91 16 33 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 34 H 0.08 4.38 7.42 -2.91 -0.02 4.36 16 35 H 0.13 4.20 8.06 -2.91 -0.02 4.18 16 36 H 0.15 3.48 8.06 -2.91 -0.02 3.45 16 37 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 38 H 0.13 4.28 7.96 -2.91 -0.02 4.25 16 39 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.04 1.48 7.45 -2.39 -0.02 1.46 16 42 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 43 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.05 1.07 8.14 -2.39 -0.02 1.06 16 46 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 48 H 0.08 1.32 6.43 -2.39 -0.02 1.30 16 49 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -70.29 383.30 4.09 -66.20 By element: Atomic # 1 Polarization: 42.40 SS G_CDS: 0.12 Total: 42.52 kcal Atomic # 6 Polarization: -40.60 SS G_CDS: 3.80 Total: -36.79 kcal Atomic # 7 Polarization: -82.04 SS G_CDS: -1.64 Total: -83.68 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -0.05 Total: -30.04 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 1.84 Total: 41.79 kcal Total: -70.29 4.09 -66.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584409681.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.300 kcal (2) G-P(sol) polarization free energy of solvation -70.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds