Wall clock time and date at job start Tue Mar 31 2020 11:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47388 * 2 1 4 4 N 1.46499 * 109.46804 * 240.00229 * 2 1 3 5 5 C 1.34773 * 120.00047 * 85.00076 * 4 2 1 6 6 O 1.21282 * 120.00026 * 0.02562 * 5 4 2 7 7 C 1.50703 * 120.00235 * 179.97438 * 5 4 2 8 8 H 1.08997 * 109.47321 * 300.00826 * 7 5 4 9 9 C 1.50707 * 109.46698 * 60.00574 * 7 5 4 10 10 H 1.08000 * 119.99982 * 33.93980 * 9 7 5 11 11 C 1.37881 * 119.99731 * 213.94442 * 9 7 5 12 12 N 1.31518 * 120.00109 * 6.38816 * 11 9 7 13 13 Si 1.86805 * 119.99826 * 186.39061 * 11 9 7 14 14 H 1.48496 * 109.46933 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46863 * 119.99861 * 13 11 9 16 16 H 1.48502 * 109.46887 * 239.99958 * 13 11 9 17 17 C 1.50697 * 109.47147 * 180.02562 * 7 5 4 18 18 C 1.38241 * 120.00159 * 293.84654 * 17 7 5 19 19 C 1.38229 * 119.99906 * 179.78809 * 18 17 7 20 20 C 1.38235 * 120.00087 * 0.44511 * 19 18 17 21 21 C 1.38236 * 120.00050 * 359.81652 * 20 19 18 22 22 C 1.38234 * 120.00041 * 359.97128 * 21 20 19 23 23 C 1.52998 * 109.47085 * 120.00643 * 2 1 3 24 24 C 1.53003 * 109.46965 * 299.99673 * 23 2 1 25 25 C 1.52999 * 109.47480 * 180.02562 * 24 23 2 26 26 C 1.53005 * 109.46868 * 59.99565 * 25 24 23 27 27 C 1.52994 * 109.47439 * 300.00311 * 26 25 24 28 28 C 1.53002 * 109.47085 * 179.97438 * 23 2 1 29 29 H 1.09001 * 109.46851 * 59.99490 * 1 2 3 30 30 H 1.08996 * 109.47388 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47198 * 299.99826 * 1 2 3 32 32 H 0.97005 * 120.00308 * 265.00017 * 4 2 1 33 33 H 0.96998 * 119.99460 * 180.02562 * 12 11 9 34 34 H 1.08007 * 119.99581 * 0.02562 * 18 17 7 35 35 H 1.07998 * 120.00173 * 180.27845 * 19 18 17 36 36 H 1.07997 * 119.99868 * 179.82916 * 20 19 18 37 37 H 1.08001 * 120.00074 * 180.02562 * 21 20 19 38 38 H 1.07998 * 120.00363 * 180.02562 * 22 21 20 39 39 H 1.08996 * 109.47532 * 59.99446 * 23 2 1 40 40 H 1.09000 * 109.47367 * 60.00293 * 24 23 2 41 41 H 1.09005 * 109.47373 * 300.00322 * 24 23 2 42 42 H 1.08989 * 109.47723 * 179.97438 * 25 24 23 43 43 H 1.09005 * 109.46974 * 300.00436 * 25 24 23 44 44 H 1.09005 * 109.46612 * 60.00649 * 26 25 24 45 45 H 1.08995 * 109.46844 * 179.97438 * 26 25 24 46 46 H 1.09000 * 109.47381 * 179.97438 * 27 26 25 47 47 H 1.08996 * 109.47442 * 300.00034 * 27 26 25 48 48 H 1.08996 * 109.47237 * 59.99891 * 28 23 2 49 49 H 1.09003 * 109.46673 * 299.99543 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8590 1.1587 -2.4114 7 6 2.6498 -0.7284 -3.5875 8 1 3.6490 -1.1204 -3.3980 9 6 1.7202 -1.8652 -3.9264 10 1 0.6609 -1.7711 -3.7379 11 6 2.2221 -3.0254 -4.4770 12 7 3.5219 -3.1907 -4.5904 13 14 1.0559 -4.3624 -5.0617 14 1 -0.3462 -3.9351 -4.8236 15 1 1.2621 -4.5990 -6.5132 16 1 1.3248 -5.6161 -4.3126 17 6 2.7009 0.2401 -4.7409 18 6 1.5306 0.7719 -5.2494 19 6 1.5779 1.6637 -6.3045 20 6 2.7948 2.0166 -6.8572 21 6 3.9647 1.4807 -6.3523 22 6 3.9178 0.5923 -5.2943 23 6 2.0400 -0.7214 1.2491 24 6 1.5300 -0.0002 2.4985 25 6 2.0405 -0.7211 3.7477 26 6 3.5705 -0.7207 3.7473 27 6 4.0805 -1.4419 2.4981 28 6 3.5700 -0.7219 1.2488 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.2490 -1.6318 -1.1527 33 1 3.8749 -4.0068 -4.9781 34 1 0.5796 0.4935 -4.8198 35 1 0.6639 2.0826 -6.6989 36 1 2.8314 2.7112 -7.6834 37 1 4.9155 1.7568 -6.7838 38 1 4.8318 0.1739 -4.8995 39 1 1.6766 -1.7490 1.2491 40 1 0.4400 -0.0002 2.4985 41 1 1.8934 1.0275 2.4986 42 1 1.6776 -0.2071 4.6377 43 1 1.6775 -1.7489 3.7478 44 1 3.9335 0.3072 3.7472 45 1 3.9342 -1.2339 4.6375 46 1 5.1705 -1.4412 2.4976 47 1 3.7175 -2.4696 2.4982 48 1 3.9337 0.3055 1.2487 49 1 3.9329 -1.2360 0.3588 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001584409684.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:31 Heat of formation + Delta-G solvation = -54.141324 kcal Electronic energy + Delta-G solvation = -26998.603523 eV Core-core repulsion = 23502.480632 eV Total energy + Delta-G solvation = -3496.122891 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -39.58188 -38.59688 -37.52255 -34.73853 -33.61761 -31.39495 -31.00281 -30.57229 -29.92398 -28.61656 -27.18374 -24.16021 -23.39152 -22.40032 -21.59145 -21.14603 -20.08731 -19.88608 -19.04477 -16.77736 -16.25298 -15.89447 -15.49882 -15.18341 -14.49999 -14.34760 -14.19359 -14.04756 -13.96225 -13.57538 -13.41995 -12.99865 -12.84549 -12.53040 -12.40979 -12.37013 -12.11122 -11.89305 -11.61659 -11.49676 -11.32504 -11.26822 -11.08141 -11.07537 -10.98032 -10.76119 -10.38428 -10.33990 -10.26219 -10.06534 -9.95120 -9.92434 -9.41819 -8.75820 -8.52557 -8.22904 -7.93382 -7.59422 -6.27211 -4.31546 2.38780 2.41950 3.18741 3.28255 3.31644 3.79090 4.08390 4.29995 4.63220 4.75008 4.78103 4.86134 5.10506 5.12797 5.26410 5.32657 5.47784 5.51163 5.53507 5.60790 5.72924 5.73174 5.76838 5.81407 5.84947 5.90853 5.97164 6.04904 6.10044 6.14773 6.17915 6.20224 6.25830 6.26910 6.37888 6.45965 6.50489 6.56850 6.61805 6.66454 6.89388 6.99522 7.20389 7.36166 7.38136 7.46723 7.64366 7.78054 7.97608 8.09731 8.48639 8.73359 9.30997 9.36752 10.81533 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012017 B = 0.004198 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.413116 B = 6668.805927 C = 7732.046268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.079 0.921 4 N -0.723 5.723 5 C 0.529 3.471 6 O -0.570 6.570 7 C 0.047 3.953 8 H 0.091 0.909 9 C -0.511 4.511 10 H 0.062 0.938 11 C 0.075 3.925 12 N -0.880 5.880 13 Si 0.895 3.105 14 H -0.271 1.271 15 H -0.281 1.281 16 H -0.282 1.282 17 C -0.010 4.010 18 C -0.084 4.084 19 C -0.135 4.135 20 C -0.149 4.149 21 C -0.132 4.132 22 C -0.121 4.121 23 C -0.092 4.092 24 C -0.113 4.113 25 C -0.118 4.118 26 C -0.119 4.119 27 C -0.119 4.119 28 C -0.115 4.115 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.404 0.596 33 H 0.266 0.734 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.056 0.944 46 H 0.059 0.941 47 H 0.061 0.939 48 H 0.060 0.940 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.509 3.279 11.514 11.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.042 3.958 3 H 0.097 0.903 4 N -0.375 5.375 5 C 0.319 3.681 6 O -0.449 6.449 7 C 0.026 3.974 8 H 0.108 0.892 9 C -0.549 4.549 10 H 0.080 0.920 11 C -0.130 4.130 12 N -0.516 5.516 13 Si 0.722 3.278 14 H -0.195 1.195 15 H -0.207 1.207 16 H -0.208 1.208 17 C -0.011 4.011 18 C -0.102 4.102 19 C -0.153 4.153 20 C -0.167 4.167 21 C -0.150 4.150 22 C -0.139 4.139 23 C -0.111 4.111 24 C -0.151 4.151 25 C -0.155 4.155 26 C -0.157 4.157 27 C -0.156 4.156 28 C -0.152 4.152 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.238 0.762 33 H 0.076 0.924 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.565 3.983 11.410 12.098 hybrid contribution -0.482 -1.315 -0.504 1.489 sum -1.047 2.668 10.906 11.276 Atomic orbital electron populations 1.22217 0.96215 1.01825 1.01788 1.20793 0.93470 0.97177 0.84369 0.90317 1.45975 1.68295 1.14287 1.08933 1.21550 0.75414 0.86326 0.84836 1.90570 1.51861 1.16992 1.85508 1.18144 1.00970 0.92106 0.86162 0.89159 1.20708 0.93429 0.97390 1.43374 0.91982 1.24948 0.95146 0.98123 0.94753 1.69892 1.11212 1.27204 1.43281 0.86476 0.81264 0.81224 0.78792 1.19510 1.20716 1.20837 1.20069 0.91943 0.92545 0.96555 1.20826 0.98410 0.95716 0.95293 1.20957 0.96942 0.99521 0.97873 1.20793 0.93051 1.01965 1.00938 1.20900 0.97301 0.98921 0.97900 1.21002 0.97711 0.97943 0.97237 1.21414 0.95798 0.99996 0.93872 1.21598 1.00480 0.99345 0.93634 1.21522 0.95702 1.00705 0.97609 1.21543 0.95754 1.00664 0.97743 1.21523 1.00069 0.99436 0.94616 1.21560 0.94792 1.00941 0.97920 0.92166 0.92690 0.92400 0.76150 0.92424 0.87137 0.87622 0.87736 0.87581 0.87033 0.90810 0.91553 0.91932 0.92336 0.92081 0.92182 0.92501 0.92222 0.92061 0.92135 0.91181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.13 37.16 0.34 -2.02 16 2 C 0.15 2.25 2.16 -67.93 -0.15 2.10 16 3 H 0.08 1.34 7.58 -51.93 -0.39 0.95 16 4 N -0.72 -13.15 4.28 -53.81 -0.23 -13.38 16 5 C 0.53 11.66 7.01 -10.99 -0.08 11.59 16 6 O -0.57 -13.80 15.08 5.56 0.08 -13.72 16 7 C 0.05 1.12 2.44 -94.07 -0.23 0.89 16 8 H 0.09 2.28 7.00 -51.93 -0.36 1.91 16 9 C -0.51 -12.74 7.46 -34.44 -0.26 -13.00 16 10 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 11 C 0.07 1.89 5.45 -17.82 -0.10 1.80 16 12 N -0.88 -23.11 12.78 55.43 0.71 -22.41 16 13 Si 0.90 20.02 29.54 -169.99 -5.02 15.00 16 14 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 15 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 16 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 17 C -0.01 -0.24 4.30 -104.62 -0.45 -0.69 16 18 C -0.08 -1.91 8.31 -39.58 -0.33 -2.24 16 19 C -0.13 -2.69 10.05 -39.59 -0.40 -3.09 16 20 C -0.15 -2.81 10.05 -39.58 -0.40 -3.21 16 21 C -0.13 -2.58 10.05 -39.58 -0.40 -2.98 16 22 C -0.12 -2.66 9.67 -39.58 -0.38 -3.05 16 23 C -0.09 -1.12 1.82 -90.62 -0.17 -1.28 16 24 C -0.11 -1.17 4.85 -26.73 -0.13 -1.30 16 25 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 26 C -0.12 -1.11 5.92 -26.73 -0.16 -1.27 16 27 C -0.12 -1.24 5.92 -26.76 -0.16 -1.40 16 28 C -0.11 -1.41 5.04 -26.75 -0.13 -1.54 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.70 6.43 -51.93 -0.33 0.37 16 32 H 0.40 7.16 8.27 -40.82 -0.34 6.82 16 33 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 34 H 0.11 2.54 7.89 -52.48 -0.41 2.13 16 35 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 36 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.11 2.37 7.95 -52.49 -0.42 1.96 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.66 6.43 -51.93 -0.33 0.32 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 49 H 0.07 0.96 7.44 -51.93 -0.39 0.58 16 LS Contribution 387.44 15.07 5.84 5.84 Total: -1.00 -27.99 387.44 -10.79 -38.78 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -8.45 Total: 11.81 kcal Atomic # 6 Polarization: -18.20 SS G_CDS: -3.73 Total: -21.93 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.48 Total: -35.78 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: 0.08 Total: -13.72 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -27.99 -10.79 -38.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584409684.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.359 kcal (2) G-P(sol) polarization free energy of solvation -27.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds