Wall clock time and date at job start Tue Mar 31 2020 11:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47388 * 2 1 4 4 N 1.46499 * 109.46804 * 240.00229 * 2 1 3 5 5 C 1.34773 * 120.00047 * 85.00076 * 4 2 1 6 6 O 1.21282 * 120.00026 * 0.02562 * 5 4 2 7 7 C 1.50703 * 120.00235 * 179.97438 * 5 4 2 8 8 H 1.08997 * 109.47321 * 300.00826 * 7 5 4 9 9 C 1.50707 * 109.46698 * 60.00574 * 7 5 4 10 10 H 1.08000 * 119.99982 * 33.93980 * 9 7 5 11 11 C 1.37881 * 119.99731 * 213.94442 * 9 7 5 12 12 N 1.31518 * 120.00109 * 6.38816 * 11 9 7 13 13 Si 1.86805 * 119.99826 * 186.39061 * 11 9 7 14 14 H 1.48496 * 109.46933 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.46863 * 119.99861 * 13 11 9 16 16 H 1.48502 * 109.46887 * 239.99958 * 13 11 9 17 17 C 1.50697 * 109.47147 * 180.02562 * 7 5 4 18 18 C 1.38241 * 120.00159 * 293.84654 * 17 7 5 19 19 C 1.38229 * 119.99906 * 179.78809 * 18 17 7 20 20 C 1.38235 * 120.00087 * 0.44511 * 19 18 17 21 21 C 1.38236 * 120.00050 * 359.81652 * 20 19 18 22 22 C 1.38234 * 120.00041 * 359.97128 * 21 20 19 23 23 C 1.52998 * 109.47085 * 120.00643 * 2 1 3 24 24 C 1.53003 * 109.46965 * 299.99673 * 23 2 1 25 25 C 1.52999 * 109.47480 * 180.02562 * 24 23 2 26 26 C 1.53005 * 109.46868 * 59.99565 * 25 24 23 27 27 C 1.52994 * 109.47439 * 300.00311 * 26 25 24 28 28 C 1.53002 * 109.47085 * 179.97438 * 23 2 1 29 29 H 1.09001 * 109.46851 * 59.99490 * 1 2 3 30 30 H 1.08996 * 109.47388 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47198 * 299.99826 * 1 2 3 32 32 H 0.97005 * 120.00308 * 265.00017 * 4 2 1 33 33 H 0.96998 * 119.99460 * 180.02562 * 12 11 9 34 34 H 1.08007 * 119.99581 * 0.02562 * 18 17 7 35 35 H 1.07998 * 120.00173 * 180.27845 * 19 18 17 36 36 H 1.07997 * 119.99868 * 179.82916 * 20 19 18 37 37 H 1.08001 * 120.00074 * 180.02562 * 21 20 19 38 38 H 1.07998 * 120.00363 * 180.02562 * 22 21 20 39 39 H 1.08996 * 109.47532 * 59.99446 * 23 2 1 40 40 H 1.09000 * 109.47367 * 60.00293 * 24 23 2 41 41 H 1.09005 * 109.47373 * 300.00322 * 24 23 2 42 42 H 1.08989 * 109.47723 * 179.97438 * 25 24 23 43 43 H 1.09005 * 109.46974 * 300.00436 * 25 24 23 44 44 H 1.09005 * 109.46612 * 60.00649 * 26 25 24 45 45 H 1.08995 * 109.46844 * 179.97438 * 26 25 24 46 46 H 1.09000 * 109.47381 * 179.97438 * 27 26 25 47 47 H 1.08996 * 109.47442 * 300.00034 * 27 26 25 48 48 H 1.08996 * 109.47237 * 59.99891 * 28 23 2 49 49 H 1.09003 * 109.46673 * 299.99543 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0182 -2.3571 6 8 1.8590 1.1587 -2.4114 7 6 2.6498 -0.7284 -3.5875 8 1 3.6490 -1.1204 -3.3980 9 6 1.7202 -1.8652 -3.9264 10 1 0.6609 -1.7711 -3.7379 11 6 2.2221 -3.0254 -4.4770 12 7 3.5219 -3.1907 -4.5904 13 14 1.0559 -4.3624 -5.0617 14 1 -0.3462 -3.9351 -4.8236 15 1 1.2621 -4.5990 -6.5132 16 1 1.3248 -5.6161 -4.3126 17 6 2.7009 0.2401 -4.7409 18 6 1.5306 0.7719 -5.2494 19 6 1.5779 1.6637 -6.3045 20 6 2.7948 2.0166 -6.8572 21 6 3.9647 1.4807 -6.3523 22 6 3.9178 0.5923 -5.2943 23 6 2.0400 -0.7214 1.2491 24 6 1.5300 -0.0002 2.4985 25 6 2.0405 -0.7211 3.7477 26 6 3.5705 -0.7207 3.7473 27 6 4.0805 -1.4419 2.4981 28 6 3.5700 -0.7219 1.2488 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 2.2490 -1.6318 -1.1527 33 1 3.8749 -4.0068 -4.9781 34 1 0.5796 0.4935 -4.8198 35 1 0.6639 2.0826 -6.6989 36 1 2.8314 2.7112 -7.6834 37 1 4.9155 1.7568 -6.7838 38 1 4.8318 0.1739 -4.8995 39 1 1.6766 -1.7490 1.2491 40 1 0.4400 -0.0002 2.4985 41 1 1.8934 1.0275 2.4986 42 1 1.6776 -0.2071 4.6377 43 1 1.6775 -1.7489 3.7478 44 1 3.9335 0.3072 3.7472 45 1 3.9342 -1.2339 4.6375 46 1 5.1705 -1.4412 2.4976 47 1 3.7175 -2.4696 2.4982 48 1 3.9337 0.3055 1.2487 49 1 3.9329 -1.2360 0.3588 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001584409684.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:28 Heat of formation + Delta-G solvation = -66.530813 kcal Electronic energy + Delta-G solvation = -26999.140772 eV Core-core repulsion = 23502.480632 eV Total energy + Delta-G solvation = -3496.660140 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 3.26 seconds Orbital eigenvalues (eV) -41.07076 -39.93846 -39.01173 -36.05958 -35.50793 -33.00205 -32.44737 -31.55096 -31.54045 -29.76700 -28.89128 -25.92202 -24.65404 -23.29961 -23.21989 -22.56910 -21.37952 -21.11660 -20.42508 -18.66486 -17.79722 -17.59362 -16.93008 -16.45047 -16.12128 -15.78535 -15.68497 -15.32395 -14.99328 -14.93569 -14.72041 -14.38884 -14.17194 -14.06957 -14.00461 -13.63129 -13.36860 -13.31080 -13.09350 -12.90499 -12.86658 -12.75569 -12.42825 -12.32602 -12.17550 -11.96632 -11.96226 -11.74688 -11.66155 -11.29833 -11.27421 -10.97999 -10.87869 -10.70024 -10.33684 -9.79212 -9.57482 -9.27107 -8.22411 -6.32002 0.73843 0.79204 1.39305 1.43551 1.53131 2.00767 2.42442 2.58723 3.07471 3.26392 3.62723 3.84681 3.89147 4.19760 4.20687 4.28887 4.29453 4.36694 4.40556 4.44349 4.50550 4.53918 4.58562 4.65550 4.67992 4.72709 4.76703 4.86375 4.88879 4.95979 4.98346 5.11608 5.13040 5.18032 5.26813 5.29034 5.32753 5.32903 5.36915 5.44126 5.45508 5.52038 5.62482 5.64268 5.76869 5.79379 5.85756 5.95981 6.23339 6.39559 6.73020 6.85318 7.34524 7.61929 8.86296 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012017 B = 0.004198 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2329.413116 B = 6668.805927 C = 7732.046268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.145 3.855 3 H 0.060 0.940 4 N -0.712 5.712 5 C 0.528 3.472 6 O -0.596 6.596 7 C 0.050 3.950 8 H 0.067 0.933 9 C -0.512 4.512 10 H 0.051 0.949 11 C 0.036 3.964 12 N -0.906 5.906 13 Si 0.951 3.049 14 H -0.270 1.270 15 H -0.285 1.285 16 H -0.273 1.273 17 C -0.039 4.039 18 C -0.110 4.110 19 C -0.135 4.135 20 C -0.143 4.143 21 C -0.129 4.129 22 C -0.145 4.145 23 C -0.082 4.082 24 C -0.110 4.110 25 C -0.114 4.114 26 C -0.118 4.118 27 C -0.116 4.116 28 C -0.114 4.114 29 H 0.028 0.972 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.405 0.595 33 H 0.267 0.733 34 H 0.094 0.906 35 H 0.136 0.864 36 H 0.148 0.852 37 H 0.140 0.860 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.071 0.929 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.051 0.949 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.126 3.534 12.040 12.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.041 3.959 3 H 0.078 0.922 4 N -0.362 5.362 5 C 0.317 3.683 6 O -0.478 6.478 7 C 0.028 3.972 8 H 0.084 0.916 9 C -0.550 4.550 10 H 0.069 0.931 11 C -0.166 4.166 12 N -0.544 5.544 13 Si 0.777 3.223 14 H -0.194 1.194 15 H -0.211 1.211 16 H -0.198 1.198 17 C -0.040 4.040 18 C -0.128 4.128 19 C -0.153 4.153 20 C -0.161 4.161 21 C -0.147 4.147 22 C -0.164 4.164 23 C -0.101 4.101 24 C -0.148 4.148 25 C -0.152 4.152 26 C -0.155 4.155 27 C -0.153 4.153 28 C -0.152 4.152 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.241 0.759 33 H 0.076 0.924 34 H 0.112 0.888 35 H 0.154 0.846 36 H 0.166 0.834 37 H 0.158 0.842 38 H 0.124 0.876 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.078 0.922 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.090 0.910 46 H 0.080 0.920 47 H 0.082 0.918 48 H 0.069 0.931 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.187 4.222 11.971 12.749 hybrid contribution -0.256 -1.314 -0.686 1.504 sum -1.443 2.909 11.285 11.743 Atomic orbital electron populations 1.22160 0.95255 1.02208 1.01741 1.21001 0.94170 0.96324 0.84409 0.92222 1.45934 1.67082 1.14238 1.08949 1.21318 0.75482 0.85995 0.85527 1.90534 1.53294 1.17900 1.86037 1.18028 0.99390 0.92279 0.87459 0.91551 1.20733 0.92918 0.98019 1.43305 0.93099 1.25555 0.96314 0.99851 0.94857 1.69988 1.12457 1.27787 1.44129 0.85607 0.79478 0.79230 0.78000 1.19446 1.21062 1.19798 1.20160 0.93103 0.93688 0.97028 1.20841 0.97378 0.97574 0.97018 1.21335 0.99037 0.98271 0.96655 1.21278 0.91961 1.01584 1.01273 1.21308 0.99407 0.97403 0.96570 1.21152 0.97012 0.99448 0.98748 1.21351 0.95544 1.00034 0.93142 1.21595 1.01046 0.99071 0.93058 1.21514 0.95403 1.00952 0.97324 1.21543 0.95991 1.00563 0.97442 1.21501 1.00249 0.99428 0.94156 1.21533 0.95025 1.00397 0.98251 0.95229 0.92026 0.89381 0.75933 0.92360 0.88799 0.84627 0.83446 0.84192 0.87595 0.90297 0.90568 0.92195 0.90697 0.91640 0.92320 0.90990 0.92010 0.91765 0.93063 0.93400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.51 9.13 71.98 0.66 -3.86 16 2 C 0.15 4.53 2.16 44.99 0.10 4.63 16 3 H 0.06 2.11 7.58 -2.39 -0.02 2.09 16 4 N -0.71 -27.17 4.28 -442.54 -1.90 -29.06 16 5 C 0.53 24.58 7.01 87.66 0.61 25.20 16 6 O -0.60 -30.33 15.08 -3.04 -0.05 -30.38 16 7 C 0.05 2.49 2.44 -13.03 -0.03 2.45 16 8 H 0.07 3.58 7.00 -2.39 -0.02 3.56 16 9 C -0.51 -26.51 7.46 25.60 0.19 -26.32 16 10 H 0.05 2.69 7.82 -2.91 -0.02 2.67 16 11 C 0.04 1.86 5.45 84.66 0.46 2.32 16 12 N -0.91 -48.93 12.78 21.45 0.27 -48.65 16 13 Si 0.95 41.54 29.54 68.60 2.03 43.57 16 14 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 15 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 16 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 17 C -0.04 -1.90 4.30 -19.86 -0.09 -1.99 16 18 C -0.11 -5.11 8.31 22.27 0.19 -4.92 16 19 C -0.14 -5.22 10.05 22.27 0.22 -5.00 16 20 C -0.14 -5.00 10.05 22.27 0.22 -4.77 16 21 C -0.13 -4.84 10.05 22.27 0.22 -4.61 16 22 C -0.15 -6.55 9.67 22.27 0.22 -6.34 16 23 C -0.08 -1.95 1.82 -10.79 -0.02 -1.97 16 24 C -0.11 -2.07 4.85 30.60 0.15 -1.92 16 25 C -0.11 -1.79 5.92 30.60 0.18 -1.61 16 26 C -0.12 -1.94 5.92 30.59 0.18 -1.76 16 27 C -0.12 -2.30 5.92 30.58 0.18 -2.12 16 28 C -0.11 -2.85 5.04 30.58 0.15 -2.70 16 29 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.09 2.00 6.43 -2.39 -0.02 1.99 16 32 H 0.41 15.11 8.27 -92.70 -0.77 14.34 16 33 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 34 H 0.09 4.54 7.89 -2.91 -0.02 4.52 16 35 H 0.14 4.32 8.06 -2.91 -0.02 4.29 16 36 H 0.15 3.89 8.06 -2.91 -0.02 3.87 16 37 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 38 H 0.11 4.73 7.95 -2.91 -0.02 4.70 16 39 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.08 1.30 6.43 -2.39 -0.02 1.29 16 41 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 42 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 43 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 44 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 45 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 47 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.05 1.38 7.44 -2.39 -0.02 1.37 16 Total: -1.00 -62.51 387.44 4.31 -58.20 By element: Atomic # 1 Polarization: 41.46 SS G_CDS: 0.15 Total: 41.60 kcal Atomic # 6 Polarization: -39.08 SS G_CDS: 3.80 Total: -35.28 kcal Atomic # 7 Polarization: -76.09 SS G_CDS: -1.62 Total: -77.71 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: -0.05 Total: -30.38 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -62.51 4.31 -58.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001584409684.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.329 kcal (2) G-P(sol) polarization free energy of solvation -62.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.26 seconds