Wall clock time and date at job start Tue Mar 31 2020 10:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.49823 * 2 1 4 4 C 1.53187 * 109.52307 * 239.91880 * 2 1 3 5 5 N 1.46929 * 108.77553 * 185.39977 * 4 2 1 6 6 C 1.34775 * 120.62946 * 233.63064 * 5 4 2 7 7 O 1.21283 * 119.99868 * 179.97438 * 6 5 4 8 8 C 1.50699 * 120.00252 * 359.97438 * 6 5 4 9 9 H 1.08997 * 109.47288 * 300.00120 * 8 6 5 10 10 C 1.50705 * 109.47026 * 60.00343 * 8 6 5 11 11 H 1.07998 * 120.00037 * 235.45005 * 10 8 6 12 12 C 1.37877 * 120.00187 * 55.44074 * 10 8 6 13 13 N 1.31520 * 119.99819 * 2.11633 * 12 10 8 14 14 Si 1.86795 * 120.00154 * 182.11366 * 12 10 8 15 15 H 1.48502 * 109.47082 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47080 * 120.00151 * 14 12 10 17 17 H 1.48497 * 109.47331 * 240.00345 * 14 12 10 18 18 C 1.50699 * 109.47320 * 180.02562 * 8 6 5 19 19 C 1.38240 * 120.00186 * 226.81051 * 18 8 6 20 20 C 1.38231 * 120.00085 * 179.81196 * 19 18 8 21 21 C 1.38237 * 119.99856 * 0.39123 * 20 19 18 22 22 C 1.38232 * 120.00198 * 359.85861 * 21 20 19 23 23 C 1.38234 * 120.00017 * 47.08032 * 18 8 6 24 24 C 1.46923 * 118.73968 * 53.60500 * 5 4 2 25 25 C 1.53193 * 108.77639 * 306.39655 * 24 5 4 26 26 C 1.53006 * 109.49652 * 294.68179 * 25 24 5 27 27 C 1.52998 * 109.49853 * 174.58491 * 25 24 5 28 28 C 1.53034 * 109.49688 * 120.06295 * 2 1 3 29 29 H 1.08999 * 109.47122 * 299.93771 * 1 2 3 30 30 H 1.09004 * 109.46657 * 59.93270 * 1 2 3 31 31 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.58926 * 305.18655 * 4 2 1 33 33 H 1.08996 * 109.59417 * 65.47051 * 4 2 1 34 34 H 0.96994 * 119.99878 * 179.97438 * 13 12 10 35 35 H 1.08001 * 119.99340 * 359.97438 * 19 18 8 36 36 H 1.07999 * 120.00083 * 180.23142 * 20 19 18 37 37 H 1.08005 * 119.99945 * 179.83549 * 21 20 19 38 38 H 1.08000 * 119.99999 * 179.97438 * 22 21 20 39 39 H 1.08000 * 119.99730 * 359.97438 * 23 18 8 40 40 H 1.08998 * 109.58540 * 66.17856 * 24 5 4 41 41 H 1.09002 * 109.59030 * 186.46352 * 24 5 4 42 42 H 1.08994 * 109.47125 * 179.83811 * 26 25 24 43 43 H 1.09001 * 109.46954 * 299.83899 * 26 25 24 44 44 H 1.08997 * 109.46923 * 59.83697 * 26 25 24 45 45 H 1.08994 * 109.47424 * 300.15983 * 27 25 24 46 46 H 1.09001 * 109.47161 * 60.16116 * 27 25 24 47 47 H 1.09000 * 109.47289 * 180.15601 * 27 25 24 48 48 H 1.09004 * 109.45930 * 301.36950 * 28 2 1 49 49 H 1.09005 * 109.46105 * 61.32631 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0420 -0.7237 -1.2493 5 7 3.5053 -0.8284 -1.1689 6 6 4.2819 -0.3846 -2.1771 7 8 5.4887 -0.4763 -2.0985 8 6 3.6508 0.2255 -3.4020 9 1 2.9964 -0.5059 -3.8762 10 6 2.8461 1.4355 -3.0028 11 1 1.8014 1.5010 -3.2686 12 6 3.4434 2.4589 -2.2979 13 7 4.7253 2.3983 -2.0101 14 14 2.4321 3.9314 -1.7517 15 1 1.0259 3.7586 -2.1966 16 1 2.4729 4.0381 -0.2711 17 1 2.9935 5.1678 -2.3528 18 6 4.7293 0.6364 -4.3711 19 6 4.6886 1.8856 -4.9617 20 6 5.6800 2.2639 -5.8476 21 6 6.7078 1.3901 -6.1491 22 6 6.7458 0.1390 -5.5624 23 6 5.7564 -0.2380 -4.6736 24 6 4.1059 -1.4255 0.0316 25 6 3.5708 -0.6940 1.2666 26 6 4.0545 0.7575 1.2499 27 6 4.0797 -1.3880 2.5317 28 6 2.0408 -0.7227 1.2485 29 1 -0.3633 0.5129 0.8905 30 1 -0.3633 0.5149 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6064 -1.7217 -1.2978 33 1 1.7623 -0.1594 -2.1390 34 1 5.1457 3.1184 -1.5146 35 1 3.8835 2.5668 -4.7290 36 1 5.6501 3.2413 -6.3062 37 1 7.4809 1.6847 -6.8433 38 1 7.5486 -0.5439 -5.7983 39 1 5.7861 -1.2154 -4.2152 40 1 3.8386 -2.4807 0.0877 41 1 5.1904 -1.3252 -0.0138 42 1 3.6712 1.2784 2.1273 43 1 5.1443 0.7775 1.2628 44 1 3.6927 1.2506 0.3477 45 1 3.7358 -2.4222 2.5421 46 1 5.1694 -1.3672 2.5441 47 1 3.6964 -0.8688 3.4101 48 1 1.6577 -0.2241 2.1389 49 1 1.6971 -1.7570 1.2355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597492804.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:24 Heat of formation + Delta-G solvation = -22.920414 kcal Electronic energy + Delta-G solvation = -28922.221244 eV Core-core repulsion = 25427.452193 eV Total energy + Delta-G solvation = -3494.769051 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.77136 -38.28381 -36.77155 -34.15371 -33.36229 -32.63490 -30.79958 -29.64495 -27.71288 -26.86794 -26.29829 -25.93488 -24.88784 -23.44046 -21.24947 -20.46213 -20.23554 -18.66817 -17.75703 -16.95266 -15.68275 -15.41194 -14.95596 -14.87989 -14.62110 -14.21824 -13.93861 -13.71476 -13.59263 -13.29858 -12.91917 -12.56722 -12.39647 -12.20387 -12.15692 -12.04895 -11.85288 -11.68483 -11.48366 -11.34595 -11.17194 -11.16326 -10.97948 -10.74953 -10.74528 -10.38890 -10.37189 -10.15185 -10.02884 -9.85240 -9.66012 -9.63224 -9.34249 -8.68176 -8.22860 -7.65741 -7.50033 -7.35923 -6.12506 -4.25631 2.57849 2.64430 3.16391 3.27998 3.28781 4.04624 4.22593 4.38503 4.99741 5.05031 5.11692 5.19156 5.23539 5.40713 5.63811 5.75818 5.83427 5.87465 5.88262 5.95038 5.99504 6.06109 6.07221 6.08833 6.13274 6.14880 6.22324 6.27421 6.39502 6.43100 6.46933 6.49755 6.57829 6.64020 6.70778 6.73091 6.81396 6.84692 6.89351 6.92867 7.15557 7.16710 7.24038 7.57405 7.64163 7.66493 7.71774 7.80703 8.19084 8.28973 8.59592 8.79480 9.36680 9.73308 10.87266 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014322 B = 0.006223 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.550144 B = 4498.559123 C = 5372.775222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 H 0.083 0.917 4 C 0.116 3.884 5 N -0.611 5.611 6 C 0.555 3.445 7 O -0.548 6.548 8 C 0.057 3.943 9 H 0.054 0.946 10 C -0.535 4.535 11 H 0.068 0.932 12 C 0.081 3.919 13 N -0.834 5.834 14 Si 0.872 3.128 15 H -0.269 1.269 16 H -0.282 1.282 17 H -0.283 1.283 18 C -0.013 4.013 19 C -0.064 4.064 20 C -0.148 4.148 21 C -0.145 4.145 22 C -0.144 4.144 23 C -0.100 4.100 24 C 0.128 3.872 25 C -0.078 4.078 26 C -0.138 4.138 27 C -0.136 4.136 28 C -0.098 4.098 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.038 0.962 33 H 0.117 0.883 34 H 0.263 0.737 35 H 0.127 0.873 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.046 0.954 41 H 0.083 0.917 42 H 0.037 0.963 43 H 0.048 0.952 44 H 0.082 0.918 45 H 0.050 0.950 46 H 0.053 0.947 47 H 0.051 0.949 48 H 0.053 0.947 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.147 -5.279 3.268 8.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.127 4.127 3 H 0.101 0.899 4 C -0.007 4.007 5 N -0.344 5.344 6 C 0.346 3.654 7 O -0.425 6.425 8 C 0.036 3.964 9 H 0.072 0.928 10 C -0.572 4.572 11 H 0.086 0.914 12 C -0.127 4.127 13 N -0.466 5.466 14 Si 0.699 3.301 15 H -0.193 1.193 16 H -0.208 1.208 17 H -0.209 1.209 18 C -0.014 4.014 19 C -0.082 4.082 20 C -0.166 4.166 21 C -0.163 4.163 22 C -0.163 4.163 23 C -0.118 4.118 24 C 0.005 3.995 25 C -0.079 4.079 26 C -0.195 4.195 27 C -0.194 4.194 28 C -0.136 4.136 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.135 0.865 34 H 0.074 0.926 35 H 0.145 0.855 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.064 0.936 41 H 0.101 0.899 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.101 0.899 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.070 0.930 48 H 0.072 0.928 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.293 -5.225 3.382 7.561 hybrid contribution -0.324 1.116 0.780 1.399 sum -4.618 -4.109 4.162 7.452 Atomic orbital electron populations 1.21745 0.95633 1.01075 1.01521 1.21504 0.94663 1.01401 0.95119 0.89897 1.21851 0.80213 0.98416 1.00209 1.47775 1.06322 1.62614 1.17711 1.20984 0.86285 0.73552 0.84579 1.90524 1.15048 1.55976 1.80934 1.17903 0.92871 0.96384 0.89250 0.92811 1.20600 0.96273 1.01961 1.38371 0.91395 1.24937 0.94591 0.97733 0.95484 1.70079 1.08867 1.31927 1.35757 0.86842 0.80961 0.83501 0.78825 1.19333 1.20780 1.20903 1.19820 0.94992 0.93077 0.93545 1.21122 0.97726 0.95932 0.93424 1.20979 0.96388 0.98604 1.00647 1.20759 0.98865 0.94984 1.01725 1.20811 0.99183 0.96610 0.99649 1.20970 0.94715 0.99849 0.96283 1.21347 0.99419 0.94467 0.84315 1.20882 0.95408 0.96766 0.94831 1.21861 1.00670 0.94736 1.02237 1.21797 1.00933 0.99743 0.96954 1.21607 0.94435 0.99844 0.97701 0.93328 0.92315 0.93201 0.94346 0.86476 0.92625 0.85482 0.88155 0.88318 0.88209 0.87589 0.93613 0.89870 0.94430 0.93322 0.89914 0.93079 0.92781 0.92995 0.92806 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.20 37.16 0.34 -1.53 16 2 C -0.11 -1.72 2.53 -90.50 -0.23 -1.94 16 3 H 0.08 1.58 6.34 -51.93 -0.33 1.25 16 4 C 0.12 2.01 5.16 -3.71 -0.02 1.99 16 5 N -0.61 -12.08 2.41 -172.77 -0.42 -12.50 16 6 C 0.55 12.85 5.40 -10.99 -0.06 12.79 16 7 O -0.55 -14.41 13.36 5.55 0.07 -14.34 16 8 C 0.06 1.30 2.00 -94.07 -0.19 1.11 16 9 H 0.05 1.14 7.94 -51.93 -0.41 0.73 16 10 C -0.53 -12.25 4.84 -34.44 -0.17 -12.41 16 11 H 0.07 1.52 7.51 -52.49 -0.39 1.12 16 12 C 0.08 1.93 4.01 -17.82 -0.07 1.86 16 13 N -0.83 -21.68 10.90 55.43 0.60 -21.08 16 14 Si 0.87 19.11 29.54 -169.99 -5.02 14.09 16 15 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 18 C -0.01 -0.31 4.51 -104.62 -0.47 -0.79 16 19 C -0.06 -1.47 8.20 -39.58 -0.32 -1.80 16 20 C -0.15 -3.08 10.05 -39.58 -0.40 -3.48 16 21 C -0.15 -2.88 10.05 -39.58 -0.40 -3.28 16 22 C -0.14 -2.97 10.05 -39.58 -0.40 -3.37 16 23 C -0.10 -2.26 8.21 -39.58 -0.33 -2.59 16 24 C 0.13 2.30 5.11 -3.71 -0.02 2.28 16 25 C -0.08 -1.24 0.77 -154.39 -0.12 -1.35 16 26 C -0.14 -2.55 7.99 37.16 0.30 -2.25 16 27 C -0.14 -1.80 8.48 37.16 0.32 -1.48 16 28 C -0.10 -1.42 3.99 -26.69 -0.11 -1.53 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.12 2.18 4.39 -51.93 -0.23 1.95 16 34 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 35 H 0.13 2.99 6.05 -52.49 -0.32 2.68 16 36 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 37 H 0.10 1.67 8.06 -52.48 -0.42 1.24 16 38 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.11 2.40 7.00 -52.49 -0.37 2.03 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.08 1.70 7.00 -51.93 -0.36 1.33 16 42 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.08 1.80 5.97 -51.93 -0.31 1.49 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 370.45 15.07 5.58 5.58 Total: -1.00 -27.18 370.45 -9.71 -36.89 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -8.20 Total: 9.12 kcal Atomic # 6 Polarization: -15.44 SS G_CDS: -2.34 Total: -17.77 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.19 Total: -33.57 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.07 Total: -14.34 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -27.18 -9.71 -36.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597492804.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.971 kcal (2) G-P(sol) polarization free energy of solvation -27.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds