Wall clock time and date at job start Tue Mar 31 2020 10:46:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.09006 * 109.49823 * 2 1
4 4 C 1.53187 * 109.52307 * 239.91880 * 2 1 3
5 5 N 1.46929 * 108.77553 * 185.39977 * 4 2 1
6 6 C 1.34775 * 120.62946 * 233.63064 * 5 4 2
7 7 O 1.21283 * 119.99868 * 179.97438 * 6 5 4
8 8 C 1.50699 * 120.00252 * 359.97438 * 6 5 4
9 9 H 1.08997 * 109.47288 * 300.00120 * 8 6 5
10 10 C 1.50705 * 109.47026 * 60.00343 * 8 6 5
11 11 H 1.07998 * 120.00037 * 235.45005 * 10 8 6
12 12 C 1.37877 * 120.00187 * 55.44074 * 10 8 6
13 13 N 1.31520 * 119.99819 * 2.11633 * 12 10 8
14 14 Si 1.86795 * 120.00154 * 182.11366 * 12 10 8
15 15 H 1.48502 * 109.47082 * 0.02562 * 14 12 10
16 16 H 1.48504 * 109.47080 * 120.00151 * 14 12 10
17 17 H 1.48497 * 109.47331 * 240.00345 * 14 12 10
18 18 C 1.50699 * 109.47320 * 180.02562 * 8 6 5
19 19 C 1.38240 * 120.00186 * 226.81051 * 18 8 6
20 20 C 1.38231 * 120.00085 * 179.81196 * 19 18 8
21 21 C 1.38237 * 119.99856 * 0.39123 * 20 19 18
22 22 C 1.38232 * 120.00198 * 359.85861 * 21 20 19
23 23 C 1.38234 * 120.00017 * 47.08032 * 18 8 6
24 24 C 1.46923 * 118.73968 * 53.60500 * 5 4 2
25 25 C 1.53193 * 108.77639 * 306.39655 * 24 5 4
26 26 C 1.53006 * 109.49652 * 294.68179 * 25 24 5
27 27 C 1.52998 * 109.49853 * 174.58491 * 25 24 5
28 28 C 1.53034 * 109.49688 * 120.06295 * 2 1 3
29 29 H 1.08999 * 109.47122 * 299.93771 * 1 2 3
30 30 H 1.09004 * 109.46657 * 59.93270 * 1 2 3
31 31 H 1.09000 * 109.47156 * 179.97438 * 1 2 3
32 32 H 1.09005 * 109.58926 * 305.18655 * 4 2 1
33 33 H 1.08996 * 109.59417 * 65.47051 * 4 2 1
34 34 H 0.96994 * 119.99878 * 179.97438 * 13 12 10
35 35 H 1.08001 * 119.99340 * 359.97438 * 19 18 8
36 36 H 1.07999 * 120.00083 * 180.23142 * 20 19 18
37 37 H 1.08005 * 119.99945 * 179.83549 * 21 20 19
38 38 H 1.08000 * 119.99999 * 179.97438 * 22 21 20
39 39 H 1.08000 * 119.99730 * 359.97438 * 23 18 8
40 40 H 1.08998 * 109.58540 * 66.17856 * 24 5 4
41 41 H 1.09002 * 109.59030 * 186.46352 * 24 5 4
42 42 H 1.08994 * 109.47125 * 179.83811 * 26 25 24
43 43 H 1.09001 * 109.46954 * 299.83899 * 26 25 24
44 44 H 1.08997 * 109.46923 * 59.83697 * 26 25 24
45 45 H 1.08994 * 109.47424 * 300.15983 * 27 25 24
46 46 H 1.09001 * 109.47161 * 60.16116 * 27 25 24
47 47 H 1.09000 * 109.47289 * 180.15601 * 27 25 24
48 48 H 1.09004 * 109.45930 * 301.36950 * 28 2 1
49 49 H 1.09005 * 109.46105 * 61.32631 * 28 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8939 1.0275 0.0000
4 6 2.0420 -0.7237 -1.2493
5 7 3.5053 -0.8284 -1.1689
6 6 4.2819 -0.3846 -2.1771
7 8 5.4887 -0.4763 -2.0985
8 6 3.6508 0.2255 -3.4020
9 1 2.9964 -0.5059 -3.8762
10 6 2.8461 1.4355 -3.0028
11 1 1.8014 1.5010 -3.2686
12 6 3.4434 2.4589 -2.2979
13 7 4.7253 2.3983 -2.0101
14 14 2.4321 3.9314 -1.7517
15 1 1.0259 3.7586 -2.1966
16 1 2.4729 4.0381 -0.2711
17 1 2.9935 5.1678 -2.3528
18 6 4.7293 0.6364 -4.3711
19 6 4.6886 1.8856 -4.9617
20 6 5.6800 2.2639 -5.8476
21 6 6.7078 1.3901 -6.1491
22 6 6.7458 0.1390 -5.5624
23 6 5.7564 -0.2380 -4.6736
24 6 4.1059 -1.4255 0.0316
25 6 3.5708 -0.6940 1.2666
26 6 4.0545 0.7575 1.2499
27 6 4.0797 -1.3880 2.5317
28 6 2.0408 -0.7227 1.2485
29 1 -0.3633 0.5129 0.8905
30 1 -0.3633 0.5149 -0.8894
31 1 -0.3633 -1.0277 -0.0005
32 1 1.6064 -1.7217 -1.2978
33 1 1.7623 -0.1594 -2.1390
34 1 5.1457 3.1184 -1.5146
35 1 3.8835 2.5668 -4.7290
36 1 5.6501 3.2413 -6.3062
37 1 7.4809 1.6847 -6.8433
38 1 7.5486 -0.5439 -5.7983
39 1 5.7861 -1.2154 -4.2152
40 1 3.8386 -2.4807 0.0877
41 1 5.1904 -1.3252 -0.0138
42 1 3.6712 1.2784 2.1273
43 1 5.1443 0.7775 1.2628
44 1 3.6927 1.2506 0.3477
45 1 3.7358 -2.4222 2.5421
46 1 5.1694 -1.3672 2.5441
47 1 3.6964 -0.8688 3.4101
48 1 1.6577 -0.2241 2.1389
49 1 1.6971 -1.7570 1.2355
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001597492804.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:46:24
Heat of formation + Delta-G solvation = -22.920414 kcal
Electronic energy + Delta-G solvation = -28922.221244 eV
Core-core repulsion = 25427.452193 eV
Total energy + Delta-G solvation = -3494.769051 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-39.77136 -38.28381 -36.77155 -34.15371 -33.36229 -32.63490 -30.79958 -29.64495
-27.71288 -26.86794 -26.29829 -25.93488 -24.88784 -23.44046 -21.24947 -20.46213
-20.23554 -18.66817 -17.75703 -16.95266 -15.68275 -15.41194 -14.95596 -14.87989
-14.62110 -14.21824 -13.93861 -13.71476 -13.59263 -13.29858 -12.91917 -12.56722
-12.39647 -12.20387 -12.15692 -12.04895 -11.85288 -11.68483 -11.48366 -11.34595
-11.17194 -11.16326 -10.97948 -10.74953 -10.74528 -10.38890 -10.37189 -10.15185
-10.02884 -9.85240 -9.66012 -9.63224 -9.34249 -8.68176 -8.22860 -7.65741
-7.50033 -7.35923 -6.12506 -4.25631 2.57849 2.64430 3.16391 3.27998
3.28781 4.04624 4.22593 4.38503 4.99741 5.05031 5.11692 5.19156
5.23539 5.40713 5.63811 5.75818 5.83427 5.87465 5.88262 5.95038
5.99504 6.06109 6.07221 6.08833 6.13274 6.14880 6.22324 6.27421
6.39502 6.43100 6.46933 6.49755 6.57829 6.64020 6.70778 6.73091
6.81396 6.84692 6.89351 6.92867 7.15557 7.16710 7.24038 7.57405
7.64163 7.66493 7.71774 7.80703 8.19084 8.28973 8.59592 8.79480
9.36680 9.73308 10.87266
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.014322 B = 0.006223 C = 0.005210
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1954.550144 B = 4498.559123 C = 5372.775222
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.108 4.108
3 H 0.083 0.917
4 C 0.116 3.884
5 N -0.611 5.611
6 C 0.555 3.445
7 O -0.548 6.548
8 C 0.057 3.943
9 H 0.054 0.946
10 C -0.535 4.535
11 H 0.068 0.932
12 C 0.081 3.919
13 N -0.834 5.834
14 Si 0.872 3.128
15 H -0.269 1.269
16 H -0.282 1.282
17 H -0.283 1.283
18 C -0.013 4.013
19 C -0.064 4.064
20 C -0.148 4.148
21 C -0.145 4.145
22 C -0.144 4.144
23 C -0.100 4.100
24 C 0.128 3.872
25 C -0.078 4.078
26 C -0.138 4.138
27 C -0.136 4.136
28 C -0.098 4.098
29 H 0.048 0.952
30 H 0.058 0.942
31 H 0.049 0.951
32 H 0.038 0.962
33 H 0.117 0.883
34 H 0.263 0.737
35 H 0.127 0.873
36 H 0.100 0.900
37 H 0.099 0.901
38 H 0.100 0.900
39 H 0.106 0.894
40 H 0.046 0.954
41 H 0.083 0.917
42 H 0.037 0.963
43 H 0.048 0.952
44 H 0.082 0.918
45 H 0.050 0.950
46 H 0.053 0.947
47 H 0.051 0.949
48 H 0.053 0.947
49 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.147 -5.279 3.268 8.064
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.127 4.127
3 H 0.101 0.899
4 C -0.007 4.007
5 N -0.344 5.344
6 C 0.346 3.654
7 O -0.425 6.425
8 C 0.036 3.964
9 H 0.072 0.928
10 C -0.572 4.572
11 H 0.086 0.914
12 C -0.127 4.127
13 N -0.466 5.466
14 Si 0.699 3.301
15 H -0.193 1.193
16 H -0.208 1.208
17 H -0.209 1.209
18 C -0.014 4.014
19 C -0.082 4.082
20 C -0.166 4.166
21 C -0.163 4.163
22 C -0.163 4.163
23 C -0.118 4.118
24 C 0.005 3.995
25 C -0.079 4.079
26 C -0.195 4.195
27 C -0.194 4.194
28 C -0.136 4.136
29 H 0.067 0.933
30 H 0.077 0.923
31 H 0.068 0.932
32 H 0.057 0.943
33 H 0.135 0.865
34 H 0.074 0.926
35 H 0.145 0.855
36 H 0.118 0.882
37 H 0.117 0.883
38 H 0.118 0.882
39 H 0.124 0.876
40 H 0.064 0.936
41 H 0.101 0.899
42 H 0.056 0.944
43 H 0.067 0.933
44 H 0.101 0.899
45 H 0.069 0.931
46 H 0.072 0.928
47 H 0.070 0.930
48 H 0.072 0.928
49 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -4.293 -5.225 3.382 7.561
hybrid contribution -0.324 1.116 0.780 1.399
sum -4.618 -4.109 4.162 7.452
Atomic orbital electron populations
1.21745 0.95633 1.01075 1.01521 1.21504 0.94663 1.01401 0.95119
0.89897 1.21851 0.80213 0.98416 1.00209 1.47775 1.06322 1.62614
1.17711 1.20984 0.86285 0.73552 0.84579 1.90524 1.15048 1.55976
1.80934 1.17903 0.92871 0.96384 0.89250 0.92811 1.20600 0.96273
1.01961 1.38371 0.91395 1.24937 0.94591 0.97733 0.95484 1.70079
1.08867 1.31927 1.35757 0.86842 0.80961 0.83501 0.78825 1.19333
1.20780 1.20903 1.19820 0.94992 0.93077 0.93545 1.21122 0.97726
0.95932 0.93424 1.20979 0.96388 0.98604 1.00647 1.20759 0.98865
0.94984 1.01725 1.20811 0.99183 0.96610 0.99649 1.20970 0.94715
0.99849 0.96283 1.21347 0.99419 0.94467 0.84315 1.20882 0.95408
0.96766 0.94831 1.21861 1.00670 0.94736 1.02237 1.21797 1.00933
0.99743 0.96954 1.21607 0.94435 0.99844 0.97701 0.93328 0.92315
0.93201 0.94346 0.86476 0.92625 0.85482 0.88155 0.88318 0.88209
0.87589 0.93613 0.89870 0.94430 0.93322 0.89914 0.93079 0.92781
0.92995 0.92806 0.92645
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.87 9.20 37.16 0.34 -1.53 16
2 C -0.11 -1.72 2.53 -90.50 -0.23 -1.94 16
3 H 0.08 1.58 6.34 -51.93 -0.33 1.25 16
4 C 0.12 2.01 5.16 -3.71 -0.02 1.99 16
5 N -0.61 -12.08 2.41 -172.77 -0.42 -12.50 16
6 C 0.55 12.85 5.40 -10.99 -0.06 12.79 16
7 O -0.55 -14.41 13.36 5.55 0.07 -14.34 16
8 C 0.06 1.30 2.00 -94.07 -0.19 1.11 16
9 H 0.05 1.14 7.94 -51.93 -0.41 0.73 16
10 C -0.53 -12.25 4.84 -34.44 -0.17 -12.41 16
11 H 0.07 1.52 7.51 -52.49 -0.39 1.12 16
12 C 0.08 1.93 4.01 -17.82 -0.07 1.86 16
13 N -0.83 -21.68 10.90 55.43 0.60 -21.08 16
14 Si 0.87 19.11 29.54 -169.99 -5.02 14.09 16
15 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16
16 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16
17 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16
18 C -0.01 -0.31 4.51 -104.62 -0.47 -0.79 16
19 C -0.06 -1.47 8.20 -39.58 -0.32 -1.80 16
20 C -0.15 -3.08 10.05 -39.58 -0.40 -3.48 16
21 C -0.15 -2.88 10.05 -39.58 -0.40 -3.28 16
22 C -0.14 -2.97 10.05 -39.58 -0.40 -3.37 16
23 C -0.10 -2.26 8.21 -39.58 -0.33 -2.59 16
24 C 0.13 2.30 5.11 -3.71 -0.02 2.28 16
25 C -0.08 -1.24 0.77 -154.39 -0.12 -1.35 16
26 C -0.14 -2.55 7.99 37.16 0.30 -2.25 16
27 C -0.14 -1.80 8.48 37.16 0.32 -1.48 16
28 C -0.10 -1.42 3.99 -26.69 -0.11 -1.53 16
29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16
30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16
32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16
33 H 0.12 2.18 4.39 -51.93 -0.23 1.95 16
34 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16
35 H 0.13 2.99 6.05 -52.49 -0.32 2.68 16
36 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16
37 H 0.10 1.67 8.06 -52.48 -0.42 1.24 16
38 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16
39 H 0.11 2.40 7.00 -52.49 -0.37 2.03 16
40 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16
41 H 0.08 1.70 7.00 -51.93 -0.36 1.33 16
42 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16
43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16
44 H 0.08 1.80 5.97 -51.93 -0.31 1.49 16
45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16
46 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16
47 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
48 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16
49 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16
LS Contribution 370.45 15.07 5.58 5.58
Total: -1.00 -27.18 370.45 -9.71 -36.89
By element:
Atomic # 1 Polarization: 17.32 SS G_CDS: -8.20 Total: 9.12 kcal
Atomic # 6 Polarization: -15.44 SS G_CDS: -2.34 Total: -17.77 kcal
Atomic # 7 Polarization: -33.76 SS G_CDS: 0.19 Total: -33.57 kcal
Atomic # 8 Polarization: -14.41 SS G_CDS: 0.07 Total: -14.34 kcal
Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal
Total LS contribution 5.58 Total: 5.58 kcal
Total: -27.18 -9.71 -36.89 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001597492804.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 13.971 kcal
(2) G-P(sol) polarization free energy of solvation -27.178 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.207 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.891 kcal
(6) G-S(sol) free energy of system = (1) + (5) -22.920 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds