Wall clock time and date at job start Tue Mar 31 2020 10:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.49823 * 2 1 4 4 C 1.53187 * 109.52307 * 239.91880 * 2 1 3 5 5 N 1.46929 * 108.77553 * 185.39977 * 4 2 1 6 6 C 1.34775 * 120.62946 * 233.63064 * 5 4 2 7 7 O 1.21283 * 119.99868 * 179.97438 * 6 5 4 8 8 C 1.50699 * 120.00252 * 359.97438 * 6 5 4 9 9 H 1.08997 * 109.47288 * 300.00120 * 8 6 5 10 10 C 1.50705 * 109.47026 * 60.00343 * 8 6 5 11 11 H 1.07998 * 120.00037 * 235.45005 * 10 8 6 12 12 C 1.37877 * 120.00187 * 55.44074 * 10 8 6 13 13 N 1.31520 * 119.99819 * 2.11633 * 12 10 8 14 14 Si 1.86795 * 120.00154 * 182.11366 * 12 10 8 15 15 H 1.48502 * 109.47082 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47080 * 120.00151 * 14 12 10 17 17 H 1.48497 * 109.47331 * 240.00345 * 14 12 10 18 18 C 1.50699 * 109.47320 * 180.02562 * 8 6 5 19 19 C 1.38240 * 120.00186 * 226.81051 * 18 8 6 20 20 C 1.38231 * 120.00085 * 179.81196 * 19 18 8 21 21 C 1.38237 * 119.99856 * 0.39123 * 20 19 18 22 22 C 1.38232 * 120.00198 * 359.85861 * 21 20 19 23 23 C 1.38234 * 120.00017 * 47.08032 * 18 8 6 24 24 C 1.46923 * 118.73968 * 53.60500 * 5 4 2 25 25 C 1.53193 * 108.77639 * 306.39655 * 24 5 4 26 26 C 1.53006 * 109.49652 * 294.68179 * 25 24 5 27 27 C 1.52998 * 109.49853 * 174.58491 * 25 24 5 28 28 C 1.53034 * 109.49688 * 120.06295 * 2 1 3 29 29 H 1.08999 * 109.47122 * 299.93771 * 1 2 3 30 30 H 1.09004 * 109.46657 * 59.93270 * 1 2 3 31 31 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.58926 * 305.18655 * 4 2 1 33 33 H 1.08996 * 109.59417 * 65.47051 * 4 2 1 34 34 H 0.96994 * 119.99878 * 179.97438 * 13 12 10 35 35 H 1.08001 * 119.99340 * 359.97438 * 19 18 8 36 36 H 1.07999 * 120.00083 * 180.23142 * 20 19 18 37 37 H 1.08005 * 119.99945 * 179.83549 * 21 20 19 38 38 H 1.08000 * 119.99999 * 179.97438 * 22 21 20 39 39 H 1.08000 * 119.99730 * 359.97438 * 23 18 8 40 40 H 1.08998 * 109.58540 * 66.17856 * 24 5 4 41 41 H 1.09002 * 109.59030 * 186.46352 * 24 5 4 42 42 H 1.08994 * 109.47125 * 179.83811 * 26 25 24 43 43 H 1.09001 * 109.46954 * 299.83899 * 26 25 24 44 44 H 1.08997 * 109.46923 * 59.83697 * 26 25 24 45 45 H 1.08994 * 109.47424 * 300.15983 * 27 25 24 46 46 H 1.09001 * 109.47161 * 60.16116 * 27 25 24 47 47 H 1.09000 * 109.47289 * 180.15601 * 27 25 24 48 48 H 1.09004 * 109.45930 * 301.36950 * 28 2 1 49 49 H 1.09005 * 109.46105 * 61.32631 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0420 -0.7237 -1.2493 5 7 3.5053 -0.8284 -1.1689 6 6 4.2819 -0.3846 -2.1771 7 8 5.4887 -0.4763 -2.0985 8 6 3.6508 0.2255 -3.4020 9 1 2.9964 -0.5059 -3.8762 10 6 2.8461 1.4355 -3.0028 11 1 1.8014 1.5010 -3.2686 12 6 3.4434 2.4589 -2.2979 13 7 4.7253 2.3983 -2.0101 14 14 2.4321 3.9314 -1.7517 15 1 1.0259 3.7586 -2.1966 16 1 2.4729 4.0381 -0.2711 17 1 2.9935 5.1678 -2.3528 18 6 4.7293 0.6364 -4.3711 19 6 4.6886 1.8856 -4.9617 20 6 5.6800 2.2639 -5.8476 21 6 6.7078 1.3901 -6.1491 22 6 6.7458 0.1390 -5.5624 23 6 5.7564 -0.2380 -4.6736 24 6 4.1059 -1.4255 0.0316 25 6 3.5708 -0.6940 1.2666 26 6 4.0545 0.7575 1.2499 27 6 4.0797 -1.3880 2.5317 28 6 2.0408 -0.7227 1.2485 29 1 -0.3633 0.5129 0.8905 30 1 -0.3633 0.5149 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6064 -1.7217 -1.2978 33 1 1.7623 -0.1594 -2.1390 34 1 5.1457 3.1184 -1.5146 35 1 3.8835 2.5668 -4.7290 36 1 5.6501 3.2413 -6.3062 37 1 7.4809 1.6847 -6.8433 38 1 7.5486 -0.5439 -5.7983 39 1 5.7861 -1.2154 -4.2152 40 1 3.8386 -2.4807 0.0877 41 1 5.1904 -1.3252 -0.0138 42 1 3.6712 1.2784 2.1273 43 1 5.1443 0.7775 1.2628 44 1 3.6927 1.2506 0.3477 45 1 3.7358 -2.4222 2.5421 46 1 5.1694 -1.3672 2.5441 47 1 3.6964 -0.8688 3.4101 48 1 1.6577 -0.2241 2.1389 49 1 1.6971 -1.7570 1.2355 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001597492804.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:23 Heat of formation + Delta-G solvation = -34.341003 kcal Electronic energy + Delta-G solvation = -28922.716478 eV Core-core repulsion = 25427.452193 eV Total energy + Delta-G solvation = -3495.264285 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.31590 -39.86909 -38.42050 -35.76002 -34.91972 -34.09308 -32.58072 -31.33202 -29.38062 -28.19283 -27.44990 -27.35102 -26.49319 -25.13108 -22.94520 -22.09901 -21.52698 -20.23502 -19.20468 -18.70564 -17.30610 -17.12951 -16.69284 -16.48111 -16.01647 -15.71235 -15.41581 -15.26693 -15.18404 -14.77514 -14.30395 -14.17936 -13.97300 -13.79264 -13.66128 -13.51847 -13.10156 -13.04592 -12.94057 -12.86072 -12.68677 -12.67229 -12.48023 -12.39412 -12.25362 -11.99563 -11.75827 -11.69197 -11.49892 -11.37902 -11.16246 -11.09399 -10.94937 -10.56326 -10.04098 -9.35669 -9.08161 -9.05112 -8.00812 -6.15164 0.89819 0.95285 1.36538 1.44986 1.50072 2.34171 2.45788 2.72577 3.26170 3.36011 3.74671 3.92947 3.97247 4.17741 4.32857 4.34964 4.36354 4.48591 4.53017 4.55341 4.68341 4.71523 4.73528 4.80800 4.81212 4.88595 4.92804 4.95307 5.00139 5.02790 5.09656 5.11093 5.17880 5.18336 5.21802 5.29202 5.36176 5.45082 5.48194 5.50917 5.55397 5.58314 5.74589 5.75527 5.90759 5.96711 6.01202 6.17054 6.45438 6.55260 6.79214 7.07473 7.48474 7.98878 8.97642 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014322 B = 0.006223 C = 0.005210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1954.550144 B = 4498.559123 C = 5372.775222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 H 0.046 0.954 4 C 0.113 3.887 5 N -0.610 5.610 6 C 0.552 3.448 7 O -0.590 6.590 8 C 0.051 3.949 9 H 0.061 0.939 10 C -0.518 4.518 11 H 0.072 0.928 12 C 0.056 3.944 13 N -0.863 5.863 14 Si 0.914 3.086 15 H -0.255 1.255 16 H -0.290 1.290 17 H -0.293 1.293 18 C -0.035 4.035 19 C -0.084 4.084 20 C -0.152 4.152 21 C -0.142 4.142 22 C -0.147 4.147 23 C -0.118 4.118 24 C 0.126 3.874 25 C -0.074 4.074 26 C -0.131 4.131 27 C -0.130 4.130 28 C -0.092 4.092 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.251 0.749 35 H 0.113 0.887 36 H 0.125 0.875 37 H 0.136 0.864 38 H 0.127 0.873 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.049 0.951 42 H 0.051 0.949 43 H 0.022 0.978 44 H 0.048 0.952 45 H 0.073 0.927 46 H 0.045 0.955 47 H 0.066 0.934 48 H 0.069 0.931 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.653 -6.298 3.827 9.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.125 4.125 3 H 0.065 0.935 4 C -0.010 4.010 5 N -0.342 5.342 6 C 0.343 3.657 7 O -0.470 6.470 8 C 0.030 3.970 9 H 0.079 0.921 10 C -0.556 4.556 11 H 0.090 0.910 12 C -0.149 4.149 13 N -0.497 5.497 14 Si 0.742 3.258 15 H -0.179 1.179 16 H -0.216 1.216 17 H -0.220 1.220 18 C -0.036 4.036 19 C -0.102 4.102 20 C -0.170 4.170 21 C -0.160 4.160 22 C -0.165 4.165 23 C -0.136 4.136 24 C 0.003 3.997 25 C -0.075 4.075 26 C -0.188 4.188 27 C -0.188 4.188 28 C -0.129 4.129 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.060 0.940 35 H 0.131 0.869 36 H 0.143 0.857 37 H 0.154 0.846 38 H 0.145 0.855 39 H 0.114 0.886 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.042 0.958 44 H 0.067 0.933 45 H 0.092 0.908 46 H 0.064 0.936 47 H 0.085 0.915 48 H 0.087 0.913 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.863 -6.257 3.950 9.440 hybrid contribution 0.154 1.406 0.555 1.520 sum -5.709 -4.850 4.505 8.742 Atomic orbital electron populations 1.21696 0.93155 1.02670 1.01832 1.21439 0.96652 0.99250 0.95165 0.93536 1.21983 0.78641 0.99920 1.00442 1.47823 1.07363 1.61582 1.17429 1.20999 0.85930 0.73421 0.85339 1.90486 1.16746 1.57897 1.81848 1.17978 0.93054 0.96495 0.89462 0.92087 1.20694 0.96207 1.01664 1.37016 0.90950 1.25283 0.94757 0.99227 0.95593 1.70236 1.10307 1.32005 1.37182 0.86165 0.80699 0.81168 0.77796 1.17850 1.21630 1.21963 1.19968 0.95752 0.93726 0.94110 1.21104 0.98515 0.95709 0.94860 1.21301 0.95903 0.99899 0.99929 1.21151 0.99101 0.94177 1.01566 1.21167 0.99077 0.97588 0.98678 1.21019 0.95627 0.99598 0.97390 1.21470 0.97562 0.96072 0.84562 1.20872 0.96788 0.94660 0.95130 1.21770 0.98930 0.96961 1.01161 1.21740 1.00481 1.00852 0.95684 1.21581 0.92709 1.01230 0.97374 0.92179 0.92954 0.90909 0.91520 0.88219 0.93956 0.86896 0.85743 0.84609 0.85510 0.88601 0.91012 0.93210 0.92970 0.95831 0.93277 0.90832 0.93612 0.91505 0.91269 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 9.20 71.98 0.66 -2.52 16 2 C -0.11 -3.19 2.53 -10.72 -0.03 -3.21 16 3 H 0.05 1.76 6.34 -2.38 -0.02 1.75 16 4 C 0.11 3.76 5.16 86.36 0.45 4.20 16 5 N -0.61 -24.32 2.41 -818.91 -1.97 -26.29 16 6 C 0.55 26.43 5.40 87.66 0.47 26.91 16 7 O -0.59 -32.52 13.36 -3.04 -0.04 -32.56 16 8 C 0.05 2.40 2.00 -13.03 -0.03 2.38 16 9 H 0.06 2.67 7.94 -2.39 -0.02 2.65 16 10 C -0.52 -24.27 4.84 25.60 0.12 -24.15 16 11 H 0.07 3.26 7.51 -2.91 -0.02 3.24 16 12 C 0.06 2.77 4.01 84.65 0.34 3.11 16 13 N -0.86 -46.89 10.90 21.45 0.23 -46.66 16 14 Si 0.91 40.12 29.54 68.60 2.03 42.14 16 15 H -0.25 -10.48 7.11 99.48 0.71 -9.78 16 16 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 17 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 18 C -0.03 -1.67 4.51 -19.87 -0.09 -1.76 16 19 C -0.08 -3.92 8.20 22.27 0.18 -3.73 16 20 C -0.15 -6.23 10.05 22.27 0.22 -6.00 16 21 C -0.14 -5.38 10.05 22.27 0.22 -5.16 16 22 C -0.15 -5.94 10.05 22.27 0.22 -5.71 16 23 C -0.12 -5.46 8.21 22.27 0.18 -5.28 16 24 C 0.13 4.50 5.11 86.36 0.44 4.94 16 25 C -0.07 -2.23 0.77 -52.10 -0.04 -2.28 16 26 C -0.13 -4.93 7.99 71.98 0.57 -4.36 16 27 C -0.13 -3.09 8.48 71.98 0.61 -2.48 16 28 C -0.09 -2.36 3.99 30.62 0.12 -2.24 16 29 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 1.86 8.14 -2.38 -0.02 1.85 16 33 H 0.10 3.69 4.39 -2.39 -0.01 3.68 16 34 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 35 H 0.11 5.48 6.05 -2.91 -0.02 5.46 16 36 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 37 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 38 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 39 H 0.10 4.53 7.00 -2.91 -0.02 4.51 16 40 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.05 2.11 7.00 -2.39 -0.02 2.09 16 42 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.05 2.20 5.97 -2.39 -0.01 2.18 16 45 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 49 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 Total: -1.00 -61.98 370.45 5.81 -56.17 By element: Atomic # 1 Polarization: 33.61 SS G_CDS: 0.91 Total: 34.53 kcal Atomic # 6 Polarization: -31.98 SS G_CDS: 4.65 Total: -27.33 kcal Atomic # 7 Polarization: -71.21 SS G_CDS: -1.74 Total: -72.95 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -0.04 Total: -32.56 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.14 kcal Total: -61.98 5.81 -56.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597492804.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.831 kcal (2) G-P(sol) polarization free energy of solvation -61.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds