Wall clock time and date at job start Tue Mar 31 2020 10:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.49605 * 2 1 4 4 C 1.53195 * 109.49531 * 120.05952 * 2 1 3 5 5 N 1.46932 * 108.76988 * 174.55554 * 4 2 1 6 6 C 1.34777 * 120.60447 * 126.42390 * 5 4 2 7 7 O 1.21279 * 120.00050 * 180.02562 * 6 5 4 8 8 C 1.50702 * 119.99989 * 0.02562 * 6 5 4 9 9 H 1.08997 * 109.47190 * 300.00345 * 8 6 5 10 10 C 1.50704 * 109.47142 * 60.00175 * 8 6 5 11 11 H 1.08004 * 119.99914 * 235.35099 * 10 8 6 12 12 C 1.37876 * 120.00179 * 55.34522 * 10 8 6 13 13 N 1.31518 * 119.99634 * 2.00918 * 12 10 8 14 14 Si 1.86801 * 120.00195 * 181.99932 * 12 10 8 15 15 H 1.48502 * 109.46953 * 0.02562 * 14 12 10 16 16 H 1.48493 * 109.46982 * 120.00071 * 14 12 10 17 17 H 1.48498 * 109.47354 * 240.00875 * 14 12 10 18 18 C 1.50697 * 109.47348 * 179.97438 * 8 6 5 19 19 C 1.38236 * 120.00149 * 226.95796 * 18 8 6 20 20 C 1.38238 * 119.99603 * 179.78882 * 19 18 8 21 21 C 1.38240 * 120.00327 * 0.46016 * 20 19 18 22 22 C 1.38238 * 119.99865 * 359.76959 * 21 20 19 23 23 C 1.38238 * 119.99959 * 0.02562 * 22 21 20 24 24 C 1.46922 * 118.76454 * 306.44220 * 5 4 2 25 25 C 1.53187 * 108.77612 * 53.59158 * 24 5 4 26 26 C 1.53005 * 109.49868 * 185.41367 * 25 24 5 27 27 C 1.53003 * 109.49970 * 65.31492 * 25 24 5 28 28 C 1.53040 * 109.49967 * 239.93076 * 2 1 3 29 29 H 1.09003 * 109.47400 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47771 * 300.00592 * 1 2 3 31 31 H 1.08999 * 109.46675 * 60.00308 * 1 2 3 32 32 H 1.09004 * 109.58347 * 294.37702 * 4 2 1 33 33 H 1.09000 * 109.58518 * 54.79890 * 4 2 1 34 34 H 0.97006 * 119.99250 * 179.97438 * 13 12 10 35 35 H 1.07992 * 120.00300 * 359.97438 * 19 18 8 36 36 H 1.08000 * 119.99761 * 180.25043 * 20 19 18 37 37 H 1.07994 * 120.00218 * 179.79221 * 21 20 19 38 38 H 1.07996 * 119.99796 * 180.02562 * 22 21 20 39 39 H 1.08000 * 119.99946 * 179.97438 * 23 22 21 40 40 H 1.08997 * 109.59022 * 293.80199 * 24 5 4 41 41 H 1.09000 * 109.70167 * 173.45058 * 24 5 4 42 42 H 1.09001 * 109.46591 * 179.83932 * 26 25 24 43 43 H 1.08996 * 109.46814 * 299.83666 * 26 25 24 44 44 H 1.08995 * 109.47052 * 59.83669 * 26 25 24 45 45 H 1.09005 * 109.46937 * 300.16396 * 27 25 24 46 46 H 1.08998 * 109.46733 * 60.16334 * 27 25 24 47 47 H 1.08999 * 109.47356 * 180.16071 * 27 25 24 48 48 H 1.09002 * 109.45644 * 298.70575 * 28 2 1 49 49 H 1.09000 * 109.45956 * 58.68120 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 1.2499 5 7 3.5045 -0.8293 1.1695 6 6 4.2810 -0.3864 2.1781 7 8 5.4878 -0.4789 2.1000 8 6 3.6498 0.2238 3.4030 9 1 3.0683 1.0993 3.1142 10 6 2.7440 -0.7871 4.0578 11 1 1.7076 -0.5447 4.2413 12 6 3.2382 -2.0215 4.4226 13 7 4.5093 -2.3023 4.2352 14 14 2.1025 -3.2947 5.1832 15 1 0.7304 -2.7359 5.2855 16 1 2.0792 -4.5098 4.3299 17 1 2.5947 -3.6506 6.5382 18 6 4.7281 0.6336 4.3726 19 6 4.6163 0.3041 5.7105 20 6 5.6076 0.6764 6.5991 21 6 6.7061 1.3864 6.1516 22 6 6.8156 1.7200 4.8146 23 6 5.8263 1.3441 3.9252 24 6 4.1052 -1.4267 -0.0309 25 6 3.5709 -0.6948 -1.2660 26 6 4.0799 -1.3889 -2.5310 27 6 4.0552 0.7565 -1.2490 28 6 2.0408 -0.7228 -1.2485 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.7636 -0.1571 2.1390 33 1 1.6052 -1.7211 1.2987 34 1 4.8570 -3.1707 4.4922 35 1 3.7560 -0.2467 6.0609 36 1 5.5223 0.4154 7.6436 37 1 7.4789 1.6801 6.8464 38 1 7.6739 2.2743 4.4649 39 1 5.9116 1.6051 2.8807 40 1 3.8375 -2.4818 -0.0871 41 1 5.1898 -1.3268 0.0124 42 1 3.6970 -0.8694 -3.4094 43 1 5.1696 -1.3687 -2.5430 44 1 3.7355 -2.4230 -2.5415 45 1 3.6934 1.2497 -0.3468 46 1 5.1450 0.7759 -1.2615 47 1 3.6725 1.2776 -2.1265 48 1 1.6967 -1.7570 -1.2356 49 1 1.6585 -0.2239 -2.1389 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597492806.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:27 Heat of formation + Delta-G solvation = -24.953142 kcal Electronic energy + Delta-G solvation = -28488.130991 eV Core-core repulsion = 24993.273794 eV Total energy + Delta-G solvation = -3494.857196 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.82774 -38.33347 -36.80998 -34.21521 -33.41111 -32.67858 -30.79548 -29.64332 -27.72057 -27.12638 -26.45634 -25.99200 -24.88961 -23.46995 -21.24925 -20.47027 -20.35928 -18.72584 -17.85260 -16.92198 -15.68157 -15.39672 -15.03263 -14.85963 -14.85370 -14.35396 -14.00286 -13.78534 -13.58654 -13.21518 -12.94326 -12.82015 -12.42321 -12.26292 -12.17842 -12.09173 -11.95029 -11.79966 -11.51528 -11.45918 -11.34386 -11.11289 -11.07948 -10.96480 -10.73226 -10.54031 -10.49313 -10.21247 -10.02392 -9.99257 -9.82975 -9.64020 -9.33348 -8.68350 -8.23078 -7.65941 -7.50937 -7.35788 -6.11532 -4.25803 2.57845 2.64479 3.19198 3.29950 3.30370 4.08298 4.20333 4.35645 4.85406 5.01660 5.04256 5.06826 5.15894 5.25733 5.47965 5.61366 5.73280 5.77385 5.80923 5.88247 5.92473 5.95089 5.99326 6.01399 6.04895 6.08207 6.10231 6.15519 6.26025 6.33492 6.38184 6.39682 6.47043 6.48831 6.57745 6.62278 6.69223 6.74157 6.82078 6.84399 6.91822 7.16698 7.24120 7.57031 7.62634 7.67449 7.72129 7.81325 8.19332 8.29543 8.59863 8.80072 9.38267 9.73302 10.88955 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012662 B = 0.005909 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.797204 B = 4737.485884 C = 5892.765125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 H 0.073 0.927 4 C 0.127 3.873 5 N -0.611 5.611 6 C 0.556 3.444 7 O -0.549 6.549 8 C 0.057 3.943 9 H 0.054 0.946 10 C -0.536 4.536 11 H 0.068 0.932 12 C 0.075 3.925 13 N -0.840 5.840 14 Si 0.882 3.118 15 H -0.270 1.270 16 H -0.284 1.284 17 H -0.282 1.282 18 C -0.014 4.014 19 C -0.065 4.065 20 C -0.148 4.148 21 C -0.145 4.145 22 C -0.144 4.144 23 C -0.100 4.100 24 C 0.129 3.871 25 C -0.081 4.081 26 C -0.137 4.137 27 C -0.134 4.134 28 C -0.098 4.098 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.105 0.895 33 H 0.052 0.948 34 H 0.263 0.737 35 H 0.127 0.873 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.048 0.952 41 H 0.083 0.917 42 H 0.052 0.948 43 H 0.054 0.946 44 H 0.053 0.947 45 H 0.061 0.939 46 H 0.051 0.949 47 H 0.046 0.954 48 H 0.059 0.941 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.771 4.358 -8.203 10.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.135 4.135 3 H 0.091 0.909 4 C 0.004 3.996 5 N -0.344 5.344 6 C 0.347 3.653 7 O -0.425 6.425 8 C 0.036 3.964 9 H 0.072 0.928 10 C -0.574 4.574 11 H 0.086 0.914 12 C -0.133 4.133 13 N -0.472 5.472 14 Si 0.709 3.291 15 H -0.194 1.194 16 H -0.210 1.210 17 H -0.208 1.208 18 C -0.015 4.015 19 C -0.083 4.083 20 C -0.166 4.166 21 C -0.163 4.163 22 C -0.163 4.163 23 C -0.118 4.118 24 C 0.005 3.995 25 C -0.082 4.082 26 C -0.195 4.195 27 C -0.191 4.191 28 C -0.136 4.136 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.123 0.877 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.145 0.855 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.067 0.933 41 H 0.102 0.898 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.065 0.935 48 H 0.077 0.923 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.932 4.149 -8.189 9.987 hybrid contribution -0.436 -1.235 0.373 1.362 sum -4.368 2.914 -7.815 9.415 Atomic orbital electron populations 1.21736 0.95204 1.01668 1.01371 1.21696 0.95220 1.00440 0.96147 0.90891 1.21708 0.80399 1.00148 0.97363 1.47724 1.06257 1.62824 1.17576 1.20981 0.86187 0.75854 0.82289 1.90521 1.15208 1.57316 1.79468 1.17894 0.92998 0.95658 0.89819 0.92809 1.20674 0.95966 0.98218 1.42533 0.91410 1.25016 0.94795 0.98229 0.95238 1.70086 1.11840 1.21921 1.43386 0.86674 0.81293 0.81893 0.79204 1.19414 1.21029 1.20844 1.19831 0.94697 0.92587 0.94383 1.21133 0.98224 0.95978 0.92918 1.20987 0.95767 1.01098 0.98766 1.20762 0.98262 1.01800 0.95505 1.20814 0.98962 1.02730 0.93750 1.20968 0.94340 0.98325 0.98194 1.21325 0.99280 0.95180 0.83742 1.20930 0.95589 0.96288 0.95359 1.21786 1.01012 1.00077 0.96593 1.21809 1.00741 0.95261 1.01327 1.21597 0.94266 1.00356 0.97365 0.92817 0.92390 0.93177 0.87657 0.93014 0.92625 0.85481 0.88109 0.88276 0.88176 0.87584 0.93349 0.89847 0.92876 0.92656 0.92824 0.92033 0.93023 0.93507 0.92257 0.92624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.20 37.16 0.34 -1.29 16 2 C -0.12 -1.58 2.53 -90.50 -0.23 -1.81 16 3 H 0.07 1.03 6.34 -51.93 -0.33 0.70 16 4 C 0.13 2.21 4.87 -3.71 -0.02 2.19 16 5 N -0.61 -12.17 2.41 -172.77 -0.42 -12.59 16 6 C 0.56 13.05 5.40 -10.98 -0.06 12.99 16 7 O -0.55 -14.60 13.37 5.56 0.07 -14.52 16 8 C 0.06 1.33 1.99 -94.07 -0.19 1.15 16 9 H 0.05 1.16 7.69 -51.93 -0.40 0.76 16 10 C -0.54 -12.72 4.98 -34.44 -0.17 -12.89 16 11 H 0.07 1.56 7.65 -52.48 -0.40 1.15 16 12 C 0.08 1.88 4.00 -17.82 -0.07 1.80 16 13 N -0.84 -22.87 10.89 55.43 0.60 -22.26 16 14 Si 0.88 19.69 29.54 -169.99 -5.02 14.67 16 15 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 18 C -0.01 -0.33 4.51 -104.62 -0.47 -0.81 16 19 C -0.06 -1.51 8.20 -39.58 -0.32 -1.83 16 20 C -0.15 -3.12 10.05 -39.58 -0.40 -3.52 16 21 C -0.15 -2.90 10.05 -39.58 -0.40 -3.30 16 22 C -0.14 -2.99 10.05 -39.58 -0.40 -3.39 16 23 C -0.10 -2.29 8.21 -39.58 -0.33 -2.61 16 24 C 0.13 2.31 5.11 -3.72 -0.02 2.29 16 25 C -0.08 -1.13 0.77 -154.39 -0.12 -1.24 16 26 C -0.14 -1.62 8.48 37.16 0.32 -1.30 16 27 C -0.13 -1.89 7.99 37.16 0.30 -1.59 16 28 C -0.10 -1.26 3.99 -26.69 -0.11 -1.37 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.11 1.94 4.86 -51.93 -0.25 1.69 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.13 3.05 6.04 -52.49 -0.32 2.73 16 36 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 37 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 38 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.11 2.41 7.01 -52.49 -0.37 2.04 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.08 1.68 7.01 -51.93 -0.36 1.31 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.96 5.97 -51.93 -0.31 0.65 16 46 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 49 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 370.66 15.07 5.59 5.59 Total: -1.00 -28.53 370.66 -9.73 -38.27 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -8.22 Total: 7.38 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -2.34 Total: -16.53 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 0.19 Total: -34.85 kcal Atomic # 8 Polarization: -14.60 SS G_CDS: 0.07 Total: -14.52 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.53 -9.73 -38.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597492806.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.313 kcal (2) G-P(sol) polarization free energy of solvation -28.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds