Wall clock time and date at job start Tue Mar 31 2020 10:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.49605 * 2 1 4 4 C 1.53195 * 109.49531 * 120.05952 * 2 1 3 5 5 N 1.46932 * 108.76988 * 174.55554 * 4 2 1 6 6 C 1.34777 * 120.60447 * 126.42390 * 5 4 2 7 7 O 1.21279 * 120.00050 * 180.02562 * 6 5 4 8 8 C 1.50702 * 119.99989 * 0.02562 * 6 5 4 9 9 H 1.08997 * 109.47190 * 300.00345 * 8 6 5 10 10 C 1.50704 * 109.47142 * 60.00175 * 8 6 5 11 11 H 1.08004 * 119.99914 * 235.35099 * 10 8 6 12 12 C 1.37876 * 120.00179 * 55.34522 * 10 8 6 13 13 N 1.31518 * 119.99634 * 2.00918 * 12 10 8 14 14 Si 1.86801 * 120.00195 * 181.99932 * 12 10 8 15 15 H 1.48502 * 109.46953 * 0.02562 * 14 12 10 16 16 H 1.48493 * 109.46982 * 120.00071 * 14 12 10 17 17 H 1.48498 * 109.47354 * 240.00875 * 14 12 10 18 18 C 1.50697 * 109.47348 * 179.97438 * 8 6 5 19 19 C 1.38236 * 120.00149 * 226.95796 * 18 8 6 20 20 C 1.38238 * 119.99603 * 179.78882 * 19 18 8 21 21 C 1.38240 * 120.00327 * 0.46016 * 20 19 18 22 22 C 1.38238 * 119.99865 * 359.76959 * 21 20 19 23 23 C 1.38238 * 119.99959 * 0.02562 * 22 21 20 24 24 C 1.46922 * 118.76454 * 306.44220 * 5 4 2 25 25 C 1.53187 * 108.77612 * 53.59158 * 24 5 4 26 26 C 1.53005 * 109.49868 * 185.41367 * 25 24 5 27 27 C 1.53003 * 109.49970 * 65.31492 * 25 24 5 28 28 C 1.53040 * 109.49967 * 239.93076 * 2 1 3 29 29 H 1.09003 * 109.47400 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47771 * 300.00592 * 1 2 3 31 31 H 1.08999 * 109.46675 * 60.00308 * 1 2 3 32 32 H 1.09004 * 109.58347 * 294.37702 * 4 2 1 33 33 H 1.09000 * 109.58518 * 54.79890 * 4 2 1 34 34 H 0.97006 * 119.99250 * 179.97438 * 13 12 10 35 35 H 1.07992 * 120.00300 * 359.97438 * 19 18 8 36 36 H 1.08000 * 119.99761 * 180.25043 * 20 19 18 37 37 H 1.07994 * 120.00218 * 179.79221 * 21 20 19 38 38 H 1.07996 * 119.99796 * 180.02562 * 22 21 20 39 39 H 1.08000 * 119.99946 * 179.97438 * 23 22 21 40 40 H 1.08997 * 109.59022 * 293.80199 * 24 5 4 41 41 H 1.09000 * 109.70167 * 173.45058 * 24 5 4 42 42 H 1.09001 * 109.46591 * 179.83932 * 26 25 24 43 43 H 1.08996 * 109.46814 * 299.83666 * 26 25 24 44 44 H 1.08995 * 109.47052 * 59.83669 * 26 25 24 45 45 H 1.09005 * 109.46937 * 300.16396 * 27 25 24 46 46 H 1.08998 * 109.46733 * 60.16334 * 27 25 24 47 47 H 1.08999 * 109.47356 * 180.16071 * 27 25 24 48 48 H 1.09002 * 109.45644 * 298.70575 * 28 2 1 49 49 H 1.09000 * 109.45956 * 58.68120 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 1.2499 5 7 3.5045 -0.8293 1.1695 6 6 4.2810 -0.3864 2.1781 7 8 5.4878 -0.4789 2.1000 8 6 3.6498 0.2238 3.4030 9 1 3.0683 1.0993 3.1142 10 6 2.7440 -0.7871 4.0578 11 1 1.7076 -0.5447 4.2413 12 6 3.2382 -2.0215 4.4226 13 7 4.5093 -2.3023 4.2352 14 14 2.1025 -3.2947 5.1832 15 1 0.7304 -2.7359 5.2855 16 1 2.0792 -4.5098 4.3299 17 1 2.5947 -3.6506 6.5382 18 6 4.7281 0.6336 4.3726 19 6 4.6163 0.3041 5.7105 20 6 5.6076 0.6764 6.5991 21 6 6.7061 1.3864 6.1516 22 6 6.8156 1.7200 4.8146 23 6 5.8263 1.3441 3.9252 24 6 4.1052 -1.4267 -0.0309 25 6 3.5709 -0.6948 -1.2660 26 6 4.0799 -1.3889 -2.5310 27 6 4.0552 0.7565 -1.2490 28 6 2.0408 -0.7228 -1.2485 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.7636 -0.1571 2.1390 33 1 1.6052 -1.7211 1.2987 34 1 4.8570 -3.1707 4.4922 35 1 3.7560 -0.2467 6.0609 36 1 5.5223 0.4154 7.6436 37 1 7.4789 1.6801 6.8464 38 1 7.6739 2.2743 4.4649 39 1 5.9116 1.6051 2.8807 40 1 3.8375 -2.4818 -0.0871 41 1 5.1898 -1.3268 0.0124 42 1 3.6970 -0.8694 -3.4094 43 1 5.1696 -1.3687 -2.5430 44 1 3.7355 -2.4230 -2.5415 45 1 3.6934 1.2497 -0.3468 46 1 5.1450 0.7759 -1.2615 47 1 3.6725 1.2776 -2.1265 48 1 1.6967 -1.7570 -1.2356 49 1 1.6585 -0.2239 -2.1389 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001597492806.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:26 Heat of formation + Delta-G solvation = -37.581679 kcal Electronic energy + Delta-G solvation = -28488.678605 eV Core-core repulsion = 24993.273794 eV Total energy + Delta-G solvation = -3495.404811 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.34324 -39.91238 -38.45719 -35.78162 -34.95691 -34.12236 -32.62171 -31.35234 -29.40652 -28.21016 -27.46755 -27.39746 -26.51859 -25.19316 -22.96501 -22.12546 -21.54502 -20.26530 -19.24199 -18.72545 -17.32037 -17.16486 -16.75276 -16.49941 -16.08294 -15.76242 -15.47958 -15.38122 -15.04427 -14.59136 -14.45854 -14.27106 -13.98546 -13.82870 -13.71882 -13.52287 -13.10744 -13.04348 -12.93680 -12.84856 -12.70394 -12.67557 -12.51158 -12.42987 -12.32472 -12.09306 -11.77401 -11.72451 -11.52688 -11.38397 -11.20192 -11.12483 -10.99908 -10.63073 -10.08448 -9.37855 -9.13014 -9.07715 -8.05631 -6.22352 0.87787 0.93295 1.38149 1.44347 1.52028 2.33426 2.45009 2.62940 3.21321 3.33627 3.71213 3.90649 3.92578 4.10720 4.29400 4.32295 4.35093 4.44708 4.50789 4.51631 4.65871 4.67941 4.73450 4.79072 4.80937 4.88282 4.91199 4.92957 4.99322 5.01496 5.07622 5.12093 5.15190 5.15827 5.19068 5.24662 5.32376 5.40113 5.44091 5.45919 5.52014 5.55723 5.65748 5.71222 5.88730 5.93700 5.98226 6.11121 6.42899 6.53062 6.75492 7.03090 7.43284 7.94563 8.93736 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012662 B = 0.005909 C = 0.004750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.797204 B = 4737.485884 C = 5892.765125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.107 4.107 3 H 0.070 0.930 4 C 0.125 3.875 5 N -0.610 5.610 6 C 0.552 3.448 7 O -0.589 6.589 8 C 0.052 3.948 9 H 0.061 0.939 10 C -0.522 4.522 11 H 0.074 0.926 12 C 0.039 3.961 13 N -0.875 5.875 14 Si 0.934 3.066 15 H -0.254 1.254 16 H -0.292 1.292 17 H -0.288 1.288 18 C -0.037 4.037 19 C -0.085 4.085 20 C -0.152 4.152 21 C -0.141 4.141 22 C -0.147 4.147 23 C -0.118 4.118 24 C 0.127 3.873 25 C -0.074 4.074 26 C -0.132 4.132 27 C -0.129 4.129 28 C -0.093 4.093 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.045 0.955 34 H 0.253 0.747 35 H 0.113 0.887 36 H 0.126 0.874 37 H 0.138 0.862 38 H 0.128 0.872 39 H 0.095 0.905 40 H 0.043 0.957 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.048 0.952 44 H 0.058 0.942 45 H 0.041 0.959 46 H 0.036 0.964 47 H 0.075 0.925 48 H 0.061 0.939 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.106 5.086 -9.140 12.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.127 4.127 3 H 0.089 0.911 4 C 0.002 3.998 5 N -0.342 5.342 6 C 0.344 3.656 7 O -0.470 6.470 8 C 0.031 3.969 9 H 0.079 0.921 10 C -0.559 4.559 11 H 0.092 0.908 12 C -0.165 4.165 13 N -0.510 5.510 14 Si 0.761 3.239 15 H -0.177 1.177 16 H -0.219 1.219 17 H -0.214 1.214 18 C -0.038 4.038 19 C -0.103 4.103 20 C -0.170 4.170 21 C -0.159 4.159 22 C -0.165 4.165 23 C -0.136 4.136 24 C 0.003 3.997 25 C -0.075 4.075 26 C -0.190 4.190 27 C -0.187 4.187 28 C -0.131 4.131 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.131 0.869 36 H 0.144 0.856 37 H 0.156 0.844 38 H 0.146 0.854 39 H 0.114 0.886 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.055 0.945 47 H 0.094 0.906 48 H 0.080 0.920 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.330 4.887 -9.145 11.659 hybrid contribution 0.000 -1.413 0.682 1.569 sum -5.330 3.474 -8.464 10.588 Atomic orbital electron populations 1.21702 0.93020 1.02239 1.02494 1.21611 0.96882 0.99677 0.94507 0.91149 1.21814 0.78740 1.00059 0.99211 1.47785 1.07297 1.61724 1.17372 1.21003 0.85858 0.75870 0.82896 1.90480 1.16872 1.59196 1.80406 1.17966 0.93180 0.95818 0.89981 0.92125 1.20842 0.96081 0.97990 1.41021 0.90774 1.25538 0.95458 0.99785 0.95730 1.70263 1.13599 1.21619 1.45510 0.85847 0.80575 0.79631 0.77841 1.17735 1.21905 1.21446 1.19969 0.95457 0.93517 0.94810 1.21114 0.98901 0.97043 0.93276 1.21318 0.95377 1.00563 0.99740 1.21168 0.98524 1.00433 0.95769 1.21178 0.99038 1.02248 0.93991 1.21014 0.95149 0.99247 0.98235 1.21436 0.97685 0.95529 0.85025 1.20895 0.96683 0.95781 0.94119 1.21754 1.00718 1.00453 0.96060 1.21765 0.99843 0.95432 1.01628 1.21591 0.92841 1.00762 0.97889 0.92514 0.92498 0.90889 0.89076 0.93711 0.93765 0.86941 0.85586 0.84424 0.85376 0.88635 0.93854 0.92854 0.90368 0.93279 0.92293 0.94030 0.94503 0.90612 0.92013 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.20 71.98 0.66 -2.11 16 2 C -0.11 -2.76 2.53 -10.71 -0.03 -2.78 16 3 H 0.07 1.88 6.34 -2.39 -0.02 1.86 16 4 C 0.12 4.33 4.87 86.36 0.42 4.75 16 5 N -0.61 -25.13 2.41 -818.90 -1.97 -27.10 16 6 C 0.55 27.13 5.40 87.66 0.47 27.60 16 7 O -0.59 -33.12 13.37 -3.03 -0.04 -33.16 16 8 C 0.05 2.48 1.99 -13.03 -0.03 2.46 16 9 H 0.06 2.72 7.69 -2.39 -0.02 2.71 16 10 C -0.52 -25.25 4.98 25.60 0.13 -25.12 16 11 H 0.07 3.42 7.65 -2.91 -0.02 3.40 16 12 C 0.04 1.98 4.00 84.65 0.34 2.32 16 13 N -0.88 -49.39 10.89 21.45 0.23 -49.16 16 14 Si 0.93 41.00 29.54 68.60 2.03 43.02 16 15 H -0.25 -10.37 7.11 99.48 0.71 -9.66 16 16 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 17 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 18 C -0.04 -1.80 4.51 -19.86 -0.09 -1.89 16 19 C -0.09 -4.05 8.20 22.27 0.18 -3.87 16 20 C -0.15 -6.27 10.05 22.27 0.22 -6.04 16 21 C -0.14 -5.37 10.05 22.27 0.22 -5.14 16 22 C -0.15 -5.96 10.05 22.27 0.22 -5.73 16 23 C -0.12 -5.54 8.21 22.27 0.18 -5.36 16 24 C 0.13 4.69 5.11 86.36 0.44 5.13 16 25 C -0.07 -1.98 0.77 -52.10 -0.04 -2.02 16 26 C -0.13 -2.85 8.48 71.98 0.61 -2.24 16 27 C -0.13 -3.53 7.99 71.98 0.57 -2.95 16 28 C -0.09 -2.14 3.99 30.62 0.12 -2.02 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.09 3.40 4.86 -2.38 -0.01 3.39 16 33 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.25 14.26 8.31 -92.70 -0.77 13.49 16 35 H 0.11 5.55 6.04 -2.91 -0.02 5.53 16 36 H 0.13 4.45 8.06 -2.91 -0.02 4.42 16 37 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 38 H 0.13 4.39 8.06 -2.91 -0.02 4.36 16 39 H 0.10 4.57 7.01 -2.91 -0.02 4.55 16 40 H 0.04 1.61 8.14 -2.39 -0.02 1.60 16 41 H 0.05 2.28 7.01 -2.39 -0.02 2.26 16 42 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.04 1.29 5.97 -2.38 -0.01 1.27 16 46 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -64.28 370.66 5.78 -58.50 By element: Atomic # 1 Polarization: 32.01 SS G_CDS: 0.91 Total: 32.92 kcal Atomic # 6 Polarization: -29.65 SS G_CDS: 4.63 Total: -25.02 kcal Atomic # 7 Polarization: -74.52 SS G_CDS: -1.74 Total: -76.25 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -0.04 Total: -33.16 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.02 kcal Total: -64.28 5.78 -58.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597492806.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.915 kcal (2) G-P(sol) polarization free energy of solvation -64.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds