Wall clock time and date at job start Tue Mar 31 2020 11:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 120.00263 * 2 1 4 4 C 1.52992 * 109.47317 * 270.00613 * 3 2 1 5 5 C 1.53001 * 109.47423 * 294.99816 * 4 3 2 6 6 C 1.52993 * 109.47116 * 180.02562 * 5 4 3 7 7 C 1.52995 * 109.47645 * 60.00232 * 6 5 4 8 8 C 1.53009 * 109.46925 * 300.00025 * 7 6 5 9 9 C 1.52993 * 109.46980 * 59.99567 * 8 7 6 10 10 C 1.34774 * 119.99936 * 180.02562 * 2 1 3 11 11 O 1.21280 * 120.00112 * 179.97438 * 10 2 1 12 12 C 1.50706 * 120.00047 * 359.97438 * 10 2 1 13 13 H 1.09007 * 109.46985 * 60.00399 * 12 10 2 14 14 C 1.50704 * 109.47016 * 300.00389 * 12 10 2 15 15 H 1.08001 * 119.99659 * 124.60396 * 14 12 10 16 16 C 1.37876 * 119.99949 * 304.32503 * 14 12 10 17 17 N 1.31510 * 120.00037 * 6.38453 * 16 14 12 18 18 Si 1.86796 * 120.00027 * 186.37569 * 16 14 12 19 19 H 1.48504 * 109.47175 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.47224 * 120.00190 * 18 16 14 21 21 H 1.48500 * 109.47146 * 240.00585 * 18 16 14 22 22 C 1.50696 * 109.47177 * 180.02562 * 12 10 2 23 23 C 1.38243 * 120.00098 * 313.11359 * 22 12 10 24 24 C 1.38230 * 119.99818 * 179.81192 * 23 22 12 25 25 C 1.38227 * 120.00335 * 0.39679 * 24 23 22 26 26 C 1.38240 * 119.99870 * 359.86132 * 25 24 23 27 27 C 1.38228 * 120.00109 * 359.94859 * 26 25 24 28 28 H 1.09002 * 109.46969 * 269.99855 * 1 2 3 29 29 H 1.08999 * 109.47264 * 29.99294 * 1 2 3 30 30 H 1.08995 * 109.47603 * 149.99530 * 1 2 3 31 31 H 1.09005 * 109.46769 * 30.00247 * 3 2 1 32 32 H 1.09001 * 109.46968 * 150.00450 * 3 2 1 33 33 H 1.09006 * 109.47564 * 54.99885 * 4 3 2 34 34 H 1.08996 * 109.46837 * 300.00452 * 5 4 3 35 35 H 1.08999 * 109.46862 * 59.99689 * 5 4 3 36 36 H 1.08996 * 109.47393 * 299.99297 * 6 5 4 37 37 H 1.09006 * 109.47269 * 180.02562 * 6 5 4 38 38 H 1.08998 * 109.47823 * 179.97438 * 7 6 5 39 39 H 1.09006 * 109.47437 * 59.99056 * 7 6 5 40 40 H 1.09006 * 109.46272 * 299.99744 * 8 7 6 41 41 H 1.08999 * 109.47113 * 180.02562 * 8 7 6 42 42 H 1.09003 * 109.46579 * 180.02562 * 9 8 7 43 43 H 1.08996 * 109.47454 * 60.00373 * 9 8 7 44 44 H 0.96994 * 120.00272 * 180.02562 * 17 16 14 45 45 H 1.08006 * 119.99576 * 0.02562 * 23 22 12 46 46 H 1.08004 * 119.99388 * 180.23676 * 24 23 22 47 47 H 1.08004 * 120.00179 * 179.83702 * 25 24 23 48 48 H 1.08006 * 119.99692 * 179.97438 * 26 25 24 49 49 H 1.07999 * 119.99883 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 6 3.3822 0.7063 -2.1267 6 6 3.6376 1.1485 -3.5689 7 6 4.2914 2.5317 -3.5702 8 6 3.3617 3.5359 -2.8859 9 6 3.1063 3.0937 -1.4437 10 6 2.1389 -1.1672 -0.0005 11 8 3.3517 -1.1672 -0.0010 12 6 1.3853 -2.4723 -0.0005 13 1 0.7583 -2.5299 -0.8904 14 6 0.5193 -2.5524 1.2302 15 1 -0.5423 -2.7255 1.1332 16 6 1.0832 -2.4102 2.4804 17 7 2.3511 -2.0807 2.5962 18 14 0.0463 -2.6856 4.0095 19 1 -1.3383 -3.0450 3.6106 20 1 0.6317 -3.7891 4.8125 21 1 0.0211 -1.4422 4.8210 22 6 2.3646 -3.6177 -0.0005 23 6 3.4357 -3.6114 -0.8745 24 6 4.3361 -4.6603 -0.8718 25 6 4.1609 -5.7193 -0.0009 26 6 3.0869 -5.7282 0.8694 27 6 2.1887 -4.6775 0.8694 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5137 30 1 -0.3634 -0.8899 -0.5139 31 1 1.6085 2.0283 0.5139 32 1 3.1500 1.1383 0.5138 33 1 1.5061 1.7551 -1.9815 34 1 4.3285 0.6617 -1.5877 35 1 2.9166 -0.2792 -2.1254 36 1 2.6914 1.1933 -4.1081 37 1 4.2996 0.4329 -4.0565 38 1 4.4738 2.8465 -4.5976 39 1 5.2377 2.4869 -3.0308 40 1 2.4154 3.5807 -3.4252 41 1 3.8273 4.5215 -2.8872 42 1 2.4436 3.8089 -0.9564 43 1 4.0525 3.0488 -0.9044 44 1 2.7479 -1.9810 3.4757 45 1 3.5708 -2.7853 -1.5570 46 1 5.1750 -4.6534 -1.5519 47 1 4.8630 -6.5401 -0.0006 48 1 2.9498 -6.5559 1.5495 49 1 1.3493 -4.6847 1.5490 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001629614063.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:53:46 Heat of formation + Delta-G solvation = -31.495720 kcal Electronic energy + Delta-G solvation = -28103.273750 eV Core-core repulsion = 24608.132846 eV Total energy + Delta-G solvation = -3495.140904 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 3.43 seconds Orbital eigenvalues (eV) -39.41245 -38.29499 -37.20244 -34.35800 -33.66168 -31.32486 -30.72770 -30.45096 -29.68856 -27.45457 -26.12915 -24.97838 -23.56556 -22.28628 -21.35279 -21.17637 -20.14252 -19.41777 -18.08973 -16.82864 -15.68800 -15.53276 -15.24377 -14.99084 -14.70647 -14.17491 -14.00662 -13.90922 -13.69990 -13.54988 -13.30273 -12.67925 -12.45298 -12.23735 -12.14108 -11.96207 -11.82681 -11.79363 -11.52091 -11.34923 -11.25026 -11.11622 -10.96586 -10.88360 -10.72458 -10.59252 -10.36086 -10.17747 -10.03178 -9.88898 -9.72705 -9.63994 -9.33529 -8.69139 -8.15521 -7.68507 -7.44668 -7.38841 -6.12148 -4.23431 2.54545 2.60117 3.19662 3.30720 3.31302 4.14456 4.24597 4.41458 4.87924 4.96912 4.98173 5.02068 5.16777 5.38170 5.46978 5.64979 5.68820 5.74554 5.76581 5.80922 5.85423 5.94170 5.96527 5.99229 6.05456 6.11943 6.16039 6.22229 6.27605 6.37502 6.40388 6.43818 6.48790 6.55344 6.63210 6.67917 6.72931 6.76883 6.82324 6.90073 6.96169 7.14375 7.20688 7.54731 7.62971 7.69962 7.73571 7.80852 8.16349 8.28283 8.62443 8.82712 9.40240 9.80538 10.89924 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013395 B = 0.005294 C = 0.004083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.880832 B = 5287.673349 C = 6855.394529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.618 5.618 3 C 0.128 3.872 4 C -0.099 4.099 5 C -0.102 4.102 6 C -0.120 4.120 7 C -0.118 4.118 8 C -0.115 4.115 9 C -0.112 4.112 10 C 0.559 3.441 11 O -0.543 6.543 12 C 0.055 3.945 13 H 0.053 0.947 14 C -0.534 4.534 15 H 0.066 0.934 16 C 0.077 3.923 17 N -0.842 5.842 18 Si 0.881 3.119 19 H -0.270 1.270 20 H -0.282 1.282 21 H -0.285 1.285 22 C -0.015 4.015 23 C -0.098 4.098 24 C -0.143 4.143 25 C -0.145 4.145 26 C -0.147 4.147 27 C -0.074 4.074 28 H 0.051 0.949 29 H 0.038 0.962 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.263 0.737 45 H 0.108 0.892 46 H 0.101 0.899 47 H 0.100 0.900 48 H 0.101 0.899 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.801 6.156 -8.509 10.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.352 5.352 3 C 0.004 3.996 4 C -0.119 4.119 5 C -0.140 4.140 6 C -0.157 4.157 7 C -0.156 4.156 8 C -0.153 4.153 9 C -0.150 4.150 10 C 0.350 3.650 11 O -0.419 6.419 12 C 0.034 3.966 13 H 0.071 0.929 14 C -0.572 4.572 15 H 0.084 0.916 16 C -0.131 4.131 17 N -0.475 5.475 18 Si 0.708 3.292 19 H -0.195 1.195 20 H -0.208 1.208 21 H -0.211 1.211 22 C -0.016 4.016 23 C -0.116 4.116 24 C -0.161 4.161 25 C -0.164 4.164 26 C -0.165 4.165 27 C -0.092 4.092 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.126 0.874 46 H 0.119 0.881 47 H 0.118 0.882 48 H 0.120 0.880 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.017 6.179 -8.351 10.389 hybrid contribution -0.435 -0.017 1.276 1.348 sum -0.418 6.162 -7.075 9.392 Atomic orbital electron populations 1.21484 0.80635 1.00249 1.01301 1.47517 1.06161 1.05217 1.76352 1.21209 0.97826 0.85814 0.94790 1.21563 0.98533 0.94377 0.97384 1.21505 0.99996 0.98584 0.93865 1.21573 1.00047 0.96124 0.98004 1.21528 0.98857 0.95512 0.99667 1.21494 0.99489 0.98017 0.96299 1.21519 1.00766 0.96403 0.96311 1.20807 0.87398 0.84906 0.71929 1.90518 1.14660 1.87011 1.49749 1.17915 0.92957 0.87864 0.97846 0.92890 1.20682 0.94030 1.53405 0.89085 0.91584 1.25004 0.94819 0.94347 0.98946 1.70030 1.10985 1.42603 1.23833 0.86707 0.80820 0.78065 0.83628 1.19450 1.20770 1.21078 1.19883 0.94590 0.94562 0.92550 1.20988 0.94774 0.96430 0.99445 1.20833 0.99539 0.95394 1.00346 1.20774 0.98590 0.98604 0.98393 1.20997 0.96530 0.99177 0.99837 1.21177 0.98680 0.92264 0.97044 0.93083 0.94338 0.91243 0.92484 0.90567 0.91887 0.91629 0.91650 0.92685 0.92545 0.92782 0.92178 0.92364 0.92588 0.92418 0.91981 0.92628 0.87383 0.88113 0.88216 0.88048 0.85499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.85 9.15 59.85 0.55 2.40 16 2 N -0.62 -12.27 2.76 -181.57 -0.50 -12.78 16 3 C 0.13 2.24 4.99 -4.05 -0.02 2.22 16 4 C -0.10 -1.46 2.40 -90.62 -0.22 -1.68 16 5 C -0.10 -1.65 3.95 -26.73 -0.11 -1.75 16 6 C -0.12 -1.59 5.92 -26.74 -0.16 -1.75 16 7 C -0.12 -1.37 5.92 -26.73 -0.16 -1.52 16 8 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 9 C -0.11 -1.39 5.20 -26.73 -0.14 -1.53 16 10 C 0.56 12.83 3.79 -10.98 -0.04 12.79 16 11 O -0.54 -13.81 11.65 5.56 0.06 -13.74 16 12 C 0.06 1.28 1.99 -94.07 -0.19 1.09 16 13 H 0.05 1.15 7.40 -51.92 -0.38 0.76 16 14 C -0.53 -12.76 5.15 -34.44 -0.18 -12.94 16 15 H 0.07 1.54 7.82 -52.49 -0.41 1.13 16 16 C 0.08 1.91 3.90 -17.82 -0.07 1.84 16 17 N -0.84 -22.85 11.11 55.43 0.62 -22.23 16 18 Si 0.88 19.72 29.54 -169.99 -5.02 14.69 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 C -0.01 -0.35 4.63 -104.62 -0.48 -0.84 16 23 C -0.10 -2.21 8.21 -39.58 -0.32 -2.53 16 24 C -0.14 -2.92 10.05 -39.59 -0.40 -3.32 16 25 C -0.15 -2.87 10.05 -39.58 -0.40 -3.27 16 26 C -0.15 -3.07 10.05 -39.58 -0.40 -3.47 16 27 C -0.07 -1.71 8.45 -39.59 -0.33 -2.05 16 28 H 0.05 0.94 7.88 -51.93 -0.41 0.53 16 29 H 0.04 0.54 8.07 -51.93 -0.42 0.12 16 30 H 0.07 1.20 6.14 -51.93 -0.32 0.88 16 31 H 0.06 0.90 8.07 -51.93 -0.42 0.48 16 32 H 0.08 1.55 7.42 -51.93 -0.39 1.17 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.19 8.00 -51.93 -0.42 0.78 16 35 H 0.06 1.23 6.06 -51.93 -0.31 0.91 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.11 2.41 6.98 -52.48 -0.37 2.04 16 46 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 47 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 48 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 49 H 0.13 3.03 6.05 -52.49 -0.32 2.71 16 LS Contribution 371.76 15.07 5.60 5.60 Total: -1.00 -28.18 371.76 -10.83 -39.01 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -8.37 Total: 7.17 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -3.22 Total: -17.73 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.11 Total: -35.01 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: 0.06 Total: -13.74 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.18 -10.83 -39.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001629614063.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.512 kcal (2) G-P(sol) polarization free energy of solvation -28.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.43 seconds