Wall clock time and date at job start Tue Mar 31 2020 11:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46904 * 109.47256 * 2 1 4 4 C 1.46900 * 110.99786 * 72.87702 * 3 2 1 5 5 C 1.52999 * 109.46986 * 276.49921 * 4 3 2 6 6 H 1.08999 * 109.47201 * 54.65986 * 5 4 3 7 7 C 1.52997 * 109.47294 * 294.65696 * 5 4 3 8 8 C 1.53000 * 109.47271 * 174.65902 * 5 4 3 9 9 C 1.50696 * 109.47520 * 184.99928 * 8 5 4 10 10 H 1.07998 * 119.99863 * 0.02562 * 9 8 5 11 11 C 1.37877 * 120.00208 * 179.97438 * 9 8 5 12 12 N 1.31514 * 120.00211 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 120.00001 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47222 * 0.02562 * 13 11 9 15 15 H 1.48496 * 109.47256 * 120.00130 * 13 11 9 16 16 H 1.48503 * 109.47464 * 240.00229 * 13 11 9 17 17 C 1.46901 * 110.99956 * 196.82750 * 3 2 1 18 18 H 1.08998 * 109.46781 * 186.04356 * 17 3 2 19 19 C 1.52997 * 109.47336 * 306.04565 * 17 3 2 20 20 C 1.50702 * 109.46618 * 66.04803 * 17 3 2 21 21 C 1.33994 * 124.91891 * 140.00301 * 20 17 3 22 22 C 1.46790 * 106.18302 * 179.97438 * 21 20 17 23 23 C 1.39402 * 134.36731 * 179.97438 * 22 21 20 24 24 C 1.36738 * 119.71399 * 180.02562 * 23 22 21 25 25 C 1.38741 * 120.41980 * 359.97438 * 24 23 22 26 26 C 1.37851 * 120.68424 * 0.02785 * 25 24 23 27 27 C 1.38942 * 119.81655 * 359.96969 * 26 25 24 28 28 O 1.34451 * 124.92542 * 319.97320 * 20 17 3 29 29 H 1.08998 * 109.46968 * 161.88751 * 1 2 3 30 30 H 1.09009 * 109.47021 * 281.88981 * 1 2 3 31 31 H 1.09004 * 109.46873 * 41.88465 * 1 2 3 32 32 H 1.08991 * 109.47184 * 239.99963 * 2 1 3 33 33 H 1.09007 * 109.47022 * 120.00021 * 2 1 3 34 34 H 1.08999 * 109.47601 * 36.50004 * 4 3 2 35 35 H 1.09002 * 109.47172 * 156.50421 * 4 3 2 36 36 H 1.08999 * 109.46938 * 60.00028 * 7 5 4 37 37 H 1.09003 * 109.47535 * 180.02562 * 7 5 4 38 38 H 1.08999 * 109.47233 * 300.00271 * 7 5 4 39 39 H 1.09004 * 109.47020 * 305.00148 * 8 5 4 40 40 H 1.09005 * 109.47307 * 64.99607 * 8 5 4 41 41 H 0.96994 * 120.00223 * 179.97438 * 12 11 9 42 42 H 1.08995 * 109.47267 * 179.97438 * 19 17 3 43 43 H 1.08995 * 109.47350 * 300.00134 * 19 17 3 44 44 H 1.09005 * 109.47001 * 60.00143 * 19 17 3 45 45 H 1.07995 * 126.91444 * 359.97438 * 21 20 17 46 46 H 1.08001 * 120.14751 * 0.02562 * 23 22 21 47 47 H 1.08003 * 119.79203 * 180.02562 * 24 23 22 48 48 H 1.07994 * 119.66118 * 180.02562 * 25 24 23 49 49 H 1.07999 * 120.09305 * 179.70568 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8145 2.0159 1.3107 5 6 0.3848 2.5535 1.3996 6 1 -0.3195 1.7502 1.1836 7 6 0.1999 3.6813 0.3824 8 6 0.1288 3.0910 2.8090 9 6 -1.3141 3.5074 2.9335 10 1 -1.9819 3.3992 2.0916 11 6 -1.7820 4.0257 4.1224 12 7 -0.9690 4.1570 5.1477 13 14 -3.5708 4.5412 4.2768 14 1 -4.2704 4.2927 2.9907 15 1 -4.2218 3.7534 5.3541 16 1 -3.6425 5.9870 4.6085 17 6 3.4328 1.4437 -0.3970 18 1 3.7994 2.4642 -0.2856 19 6 4.2521 0.5074 0.4934 20 6 3.5686 1.0154 -1.8355 21 6 4.3835 1.5872 -2.7324 22 6 4.1891 0.8528 -3.9884 23 6 4.7290 0.9529 -5.2697 24 6 4.3212 0.0874 -6.2466 25 6 3.3748 -0.8887 -5.9700 26 6 2.8298 -1.0028 -4.7089 27 6 3.2304 -0.1334 -3.7019 28 8 2.8900 0.0039 -2.4048 29 1 -0.3633 -0.9767 -0.3195 30 1 -0.3633 0.2117 1.0057 31 1 -0.3633 0.7651 -0.6861 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.9752 1.2792 2.0978 35 1 2.5200 2.8378 1.4327 36 1 0.3822 3.2985 -0.6217 37 1 -0.8185 4.0647 0.4460 38 1 0.9042 4.4846 0.5984 39 1 0.3466 2.3122 3.5400 40 1 0.7724 3.9514 2.9923 41 1 -1.2981 4.5220 5.9840 42 1 5.3006 0.5507 0.1985 43 1 4.1539 0.8172 1.5338 44 1 3.8855 -0.5131 0.3820 45 1 5.0495 2.4207 -2.5650 46 1 5.4663 1.7108 -5.4900 47 1 4.7390 0.1635 -7.2396 48 1 3.0619 -1.5661 -6.7506 49 1 2.0903 -1.7631 -4.5054 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663726112.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:38 Heat of formation + Delta-G solvation = 10.052891 kcal Electronic energy + Delta-G solvation = -26613.518701 eV Core-core repulsion = 23120.179480 eV Total energy + Delta-G solvation = -3493.339221 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -43.44778 -40.00477 -38.65643 -36.54536 -34.52561 -33.83446 -32.70114 -31.30406 -30.65095 -29.35003 -28.64620 -27.04323 -25.16608 -24.67119 -23.86499 -22.80237 -22.21948 -20.92388 -20.65209 -18.45717 -18.34849 -17.77644 -17.13259 -16.64881 -16.60305 -16.40962 -16.09614 -15.58588 -15.01341 -14.85016 -14.78303 -14.50442 -14.33720 -14.03844 -13.91515 -13.85195 -13.42385 -13.23250 -13.13172 -13.04645 -12.84833 -12.73659 -12.72737 -12.64446 -12.27912 -12.22837 -12.10045 -12.09204 -11.86045 -11.68546 -11.17439 -11.03956 -10.88088 -10.71285 -10.47904 -9.54637 -9.31848 -9.01213 -8.15739 -6.23689 0.00052 0.45469 1.39354 1.39566 1.40382 1.52946 1.74044 2.42690 2.81678 2.87769 3.17829 3.38131 3.76089 3.90572 4.05037 4.11705 4.13104 4.19102 4.24788 4.32059 4.37954 4.44285 4.50046 4.53484 4.59098 4.67150 4.70316 4.73023 4.81472 4.85619 4.92889 4.98408 4.99341 5.07098 5.11369 5.20967 5.29958 5.37193 5.39316 5.43603 5.51096 5.52914 5.54266 5.55351 5.62880 5.80279 5.85992 5.95887 6.08961 6.15220 6.31292 6.36706 6.92635 7.44212 8.96392 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.024635 B = 0.002673 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.317383 B =10472.288435 C =10756.676799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 N -0.531 5.531 4 C 0.074 3.926 5 C -0.084 4.084 6 H 0.074 0.926 7 C -0.111 4.111 8 C 0.034 3.966 9 C -0.523 4.523 10 H 0.058 0.942 11 C -0.002 4.002 12 N -0.935 5.935 13 Si 0.957 3.043 14 H -0.264 1.264 15 H -0.280 1.280 16 H -0.280 1.280 17 C 0.153 3.847 18 H 0.123 0.877 19 C -0.179 4.179 20 C 0.051 3.949 21 C -0.214 4.214 22 C -0.149 4.149 23 C -0.084 4.084 24 C -0.137 4.137 25 C -0.094 4.094 26 C -0.123 4.123 27 C 0.017 3.983 28 O -0.196 6.196 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.036 0.964 34 H 0.032 0.968 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.033 0.967 38 H 0.035 0.965 39 H -0.015 1.015 40 H -0.011 1.011 41 H 0.261 0.739 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.057 0.943 45 H 0.175 0.825 46 H 0.144 0.856 47 H 0.158 0.842 48 H 0.164 0.836 49 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.625 -10.504 -21.793 27.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.078 4.078 3 N -0.255 5.255 4 C -0.053 4.053 5 C -0.103 4.103 6 H 0.092 0.908 7 C -0.169 4.169 8 C -0.004 4.004 9 C -0.561 4.561 10 H 0.076 0.924 11 C -0.199 4.199 12 N -0.576 5.576 13 Si 0.782 3.218 14 H -0.188 1.188 15 H -0.206 1.206 16 H -0.206 1.206 17 C 0.045 3.955 18 H 0.140 0.860 19 C -0.237 4.237 20 C 0.003 3.997 21 C -0.233 4.233 22 C -0.150 4.150 23 C -0.102 4.102 24 C -0.155 4.155 25 C -0.112 4.112 26 C -0.141 4.141 27 C -0.030 4.030 28 O -0.099 6.099 29 H 0.086 0.914 30 H 0.067 0.933 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.004 0.996 40 H 0.007 0.993 41 H 0.070 0.930 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.076 0.924 45 H 0.192 0.808 46 H 0.162 0.838 47 H 0.175 0.825 48 H 0.181 0.819 49 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 13.156 -10.355 -21.837 27.517 hybrid contribution -0.439 0.144 1.432 1.505 sum 12.717 -10.210 -20.405 26.122 Atomic orbital electron populations 1.21948 0.95195 1.01694 1.01525 1.22333 0.96142 0.88417 1.00919 1.62227 1.15972 1.18066 1.29238 1.22096 0.97727 0.97610 0.87859 1.21359 0.95519 0.98217 0.95203 0.90825 1.21453 0.99897 0.97256 0.98245 1.19011 0.95132 0.94023 0.92194 1.21646 0.96636 1.40422 0.97394 0.92425 1.25903 1.01994 0.96218 0.95769 1.70097 1.37008 1.47212 1.03286 0.85518 0.80110 0.77845 0.78320 1.18761 1.20576 1.20572 1.20594 0.88925 1.00761 0.85228 0.85975 1.22457 1.01371 0.99825 1.00068 1.22380 0.93279 0.88532 0.95471 1.22441 1.05594 1.04495 0.90818 1.20249 1.00409 0.98186 0.96105 1.20624 0.99520 0.99839 0.90231 1.21182 0.98382 0.95473 1.00429 1.21342 0.95925 0.98691 0.95224 1.20308 1.03200 0.99707 0.90889 1.20241 0.98816 0.99878 0.84078 1.84028 1.57347 1.46872 1.21609 0.91398 0.93258 0.92645 0.89440 0.94604 0.95017 0.91186 0.92300 0.94752 0.94573 0.99624 0.99263 0.93029 0.90100 0.91239 0.92372 0.80753 0.83848 0.82487 0.81897 0.84204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.32 8.44 71.98 0.61 -3.71 16 2 C 0.05 1.38 4.31 86.30 0.37 1.75 16 3 N -0.53 -15.40 3.83 -875.37 -3.35 -18.75 16 4 C 0.07 2.50 3.59 86.30 0.31 2.81 16 5 C -0.08 -3.47 2.22 -10.79 -0.02 -3.49 16 6 H 0.07 3.07 4.13 -2.39 -0.01 3.06 16 7 C -0.11 -4.37 8.89 71.98 0.64 -3.73 16 8 C 0.03 1.78 4.45 29.85 0.13 1.92 16 9 C -0.52 -29.78 8.41 25.60 0.22 -29.57 16 10 H 0.06 3.20 7.06 -2.91 -0.02 3.18 16 11 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 12 N -0.93 -57.36 13.29 21.45 0.28 -57.08 16 13 Si 0.96 45.04 29.54 68.60 2.03 47.07 16 14 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 15 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 16 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 17 C 0.15 3.67 2.70 44.17 0.12 3.79 16 18 H 0.12 2.65 7.77 -2.39 -0.02 2.63 16 19 C -0.18 -3.74 8.52 71.98 0.61 -3.13 16 20 C 0.05 1.28 5.97 24.72 0.15 1.43 16 21 C -0.21 -4.85 10.99 23.54 0.26 -4.60 16 22 C -0.15 -3.46 6.40 -20.21 -0.13 -3.59 16 23 C -0.08 -1.49 10.05 22.20 0.22 -1.26 16 24 C -0.14 -1.91 9.98 22.04 0.22 -1.69 16 25 C -0.09 -1.35 10.01 22.30 0.22 -1.13 16 26 C -0.12 -2.40 10.07 22.35 0.23 -2.18 16 27 C 0.02 0.42 7.42 22.99 0.17 0.59 16 28 O -0.20 -5.38 7.62 -8.93 -0.07 -5.44 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.05 1.64 6.12 -2.38 -0.01 1.63 16 31 H 0.05 1.75 8.03 -2.39 -0.02 1.73 16 32 H 0.09 2.41 4.80 -2.39 -0.01 2.39 16 33 H 0.04 0.99 6.87 -2.38 -0.02 0.98 16 34 H 0.03 1.10 7.43 -2.39 -0.02 1.08 16 35 H 0.07 2.27 7.60 -2.39 -0.02 2.25 16 36 H 0.06 2.10 7.76 -2.39 -0.02 2.08 16 37 H 0.03 1.44 6.95 -2.39 -0.02 1.43 16 38 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 39 H -0.01 -0.83 8.14 -2.38 -0.02 -0.85 16 40 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 41 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 42 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.07 1.49 7.38 -2.39 -0.02 1.48 16 44 H 0.06 1.28 6.71 -2.38 -0.02 1.26 16 45 H 0.18 3.03 8.06 -2.91 -0.02 3.01 16 46 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 47 H 0.16 1.17 8.06 -2.91 -0.02 1.14 16 48 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 49 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -67.88 381.37 4.60 -63.28 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.92 Total: 16.35 kcal Atomic # 6 Polarization: -50.22 SS G_CDS: 4.79 Total: -45.43 kcal Atomic # 7 Polarization: -72.76 SS G_CDS: -3.07 Total: -75.83 kcal Atomic # 8 Polarization: -5.38 SS G_CDS: -0.07 Total: -5.44 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -67.88 4.60 -63.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663726112.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.331 kcal (2) G-P(sol) polarization free energy of solvation -67.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds