Wall clock time and date at job start Tue Mar 31 2020 11:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 111.00384 * 2 1 4 4 C 1.50700 * 109.46962 * 66.04578 * 3 2 1 5 5 C 1.38278 * 119.92417 * 269.73132 * 4 3 2 6 6 C 1.38113 * 120.07136 * 179.72558 * 5 4 3 7 7 C 1.38910 * 119.92367 * 0.54426 * 6 5 4 8 8 N 1.39671 * 120.07590 * 179.74604 * 7 6 5 9 9 C 1.46498 * 120.00382 * 179.97438 * 8 7 6 10 10 C 1.46498 * 119.99758 * 359.97438 * 8 7 6 11 11 C 1.50702 * 109.47361 * 90.00139 * 10 8 7 12 12 H 1.07998 * 119.99536 * 359.97438 * 11 10 8 13 13 C 1.37879 * 120.00279 * 179.97438 * 11 10 8 14 14 N 1.31517 * 119.99811 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 119.99999 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47054 * 89.99944 * 15 13 11 17 17 H 1.48499 * 109.47083 * 209.99977 * 15 13 11 18 18 H 1.48501 * 109.47080 * 330.00139 * 15 13 11 19 19 C 1.38918 * 119.85089 * 359.72937 * 7 6 5 20 20 C 1.38102 * 119.92137 * 359.97438 * 19 7 6 21 21 C 1.46900 * 110.99891 * 236.04764 * 2 1 3 22 22 C 1.53005 * 109.46989 * 282.62099 * 21 2 1 23 23 C 1.53007 * 109.47094 * 184.86623 * 22 21 2 24 24 C 1.52998 * 109.46968 * 304.86717 * 22 21 2 25 25 C 1.47198 * 109.47010 * 64.87024 * 22 21 2 26 26 N 3.66312 * 55.01384 * 192.68141 * 2 1 3 27 27 H 1.08997 * 109.47693 * 190.95635 * 1 2 3 28 28 H 1.09004 * 109.46523 * 310.95219 * 1 2 3 29 29 H 1.08998 * 109.47350 * 70.95359 * 1 2 3 30 30 H 1.08996 * 109.47235 * 186.05073 * 3 2 1 31 31 H 1.09005 * 109.46775 * 306.04905 * 3 2 1 32 32 H 1.07991 * 119.96687 * 359.97438 * 5 4 3 33 33 H 1.07996 * 120.03637 * 180.26585 * 6 5 4 34 34 H 1.09004 * 109.46986 * 90.00233 * 9 8 7 35 35 H 1.08995 * 109.47453 * 210.00101 * 9 8 7 36 36 H 1.09000 * 109.47148 * 330.00395 * 9 8 7 37 37 H 1.09001 * 109.47235 * 209.99604 * 10 8 7 38 38 H 1.08999 * 109.47721 * 329.99901 * 10 8 7 39 39 H 0.97002 * 119.99934 * 180.02562 * 14 13 11 40 40 H 1.08000 * 120.03285 * 179.97438 * 19 7 6 41 41 H 1.08004 * 119.95495 * 179.97438 * 20 19 7 42 42 H 1.09002 * 109.47272 * 42.61876 * 21 2 1 43 43 H 1.08994 * 109.47462 * 162.62159 * 21 2 1 44 44 H 1.08998 * 109.46401 * 60.00029 * 23 22 21 45 45 H 1.08997 * 109.46689 * 180.02562 * 23 22 21 46 46 H 1.08993 * 109.47144 * 300.00160 * 23 22 21 47 47 H 1.09000 * 109.47139 * 55.32405 * 24 22 21 48 48 H 1.09003 * 109.46618 * 175.32234 * 24 22 21 49 49 H 1.08993 * 109.47284 * 295.31792 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 6 0.4531 2.7536 1.4045 6 6 0.1189 3.3693 2.5948 7 6 0.9789 3.2876 3.6826 8 7 0.6465 3.9135 4.8862 9 6 1.5544 3.8259 6.0326 10 6 -0.6101 4.6576 5.0022 11 6 -1.7009 3.7311 5.4743 12 1 -1.4802 2.6918 5.6681 13 6 -2.9805 4.2102 5.6588 14 7 -3.9325 3.4014 6.0703 15 14 -3.3621 6.0079 5.3243 16 1 -3.7720 6.1714 3.9063 17 1 -4.4652 6.4535 6.2130 18 1 -2.1523 6.8280 5.5875 19 6 2.1701 2.5818 3.5708 20 6 2.4952 1.9634 2.3795 21 6 1.9954 -0.7660 -1.1376 22 6 1.8839 -2.2626 -0.8400 23 6 2.5416 -3.0577 -1.9699 24 6 2.5903 -2.5740 0.4809 25 6 0.4643 -2.6381 -0.7378 26 7 -0.6314 -2.9279 -0.6588 27 1 -0.3634 -1.0089 0.1953 28 1 -0.3632 0.6736 0.7762 29 1 -0.3634 0.3354 -0.9714 30 1 3.0798 1.3443 -0.1083 31 1 1.5611 1.9273 -0.8309 32 1 -0.2128 2.8207 0.5570 33 1 -0.8080 3.9173 2.6783 34 1 2.2568 4.6590 6.0042 35 1 0.9779 3.8681 6.9566 36 1 2.1040 2.8856 5.9897 37 1 -0.4870 5.4690 5.7195 38 1 -0.8794 5.0700 4.0298 39 1 -4.8328 3.7383 6.1998 40 1 2.8411 2.5168 4.4145 41 1 3.4215 1.4149 2.2919 42 1 1.4196 -0.5296 -2.0324 43 1 3.0412 -0.5046 -1.2989 44 1 3.5927 -2.7795 -2.0456 45 1 2.4617 -4.1239 -1.7580 46 1 2.0384 -2.8358 -2.9109 47 1 2.1771 -1.9464 1.2706 48 1 2.4401 -3.6233 0.7347 49 1 3.6568 -2.3740 0.3785 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000816632966.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:49 Heat of formation + Delta-G solvation = 72.964186 kcal Electronic energy + Delta-G solvation = -26143.278690 eV Core-core repulsion = 22684.960259 eV Total energy + Delta-G solvation = -3458.318431 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.201 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.62196 -38.80809 -36.65884 -35.46566 -34.45230 -32.61727 -30.58866 -30.29087 -28.35560 -27.60195 -27.31979 -26.67462 -24.71599 -23.27330 -22.26946 -21.50405 -21.24650 -19.55615 -17.22172 -16.94515 -16.66430 -15.98759 -15.53671 -15.27236 -14.97695 -14.48782 -14.31115 -13.92684 -13.81317 -13.65482 -13.51158 -13.30107 -13.11107 -13.08008 -12.94545 -12.59706 -12.43876 -12.28669 -12.02197 -11.86866 -11.71537 -11.62367 -11.58826 -11.45735 -11.39415 -11.22137 -11.06434 -10.96610 -10.61434 -10.50991 -10.25153 -10.06839 -9.59169 -8.92087 -8.66404 -8.37814 -8.29209 -6.42387 -6.14752 -4.14952 2.04635 2.15005 2.67826 2.69520 3.20824 3.28695 3.29261 3.65796 3.83784 4.04855 4.31596 4.52031 4.55166 4.66182 4.77286 5.06371 5.15356 5.16002 5.19345 5.30493 5.32605 5.45083 5.49463 5.54396 5.57267 5.60735 5.64460 5.67807 5.74280 5.77875 5.78332 5.94339 6.00134 6.16231 6.21043 6.23203 6.30001 6.36295 6.53555 6.72557 6.73535 6.92016 6.95145 7.04682 7.07418 7.25431 7.46917 7.50825 7.53362 8.03546 8.33088 8.50713 8.93094 9.44885 10.98276 Molecular weight = 315.20amu Principal moments of inertia in cm(-1) A = 0.016520 B = 0.003009 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.516018 B = 9304.197925 C =10081.113241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 N -0.532 5.532 3 C 0.111 3.889 4 C -0.165 4.165 5 C -0.067 4.067 6 C -0.188 4.188 7 C 0.242 3.758 8 N -0.611 5.611 9 C 0.099 3.901 10 C 0.221 3.779 11 C -0.535 4.535 12 H 0.076 0.924 13 C 0.072 3.928 14 N -0.894 5.894 15 Si 0.872 3.128 16 H -0.274 1.274 17 H -0.284 1.284 18 H -0.265 1.265 19 C -0.219 4.219 20 C -0.050 4.050 21 C 0.062 3.938 22 C 0.037 3.963 23 C -0.141 4.141 24 C -0.134 4.134 25 C 0.222 3.778 26 N -0.438 5.438 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.022 0.978 30 H 0.077 0.923 31 H 0.034 0.966 32 H 0.107 0.893 33 H 0.127 0.873 34 H 0.036 0.964 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.028 0.972 38 H 0.027 0.973 39 H 0.265 0.735 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.043 0.957 43 H 0.093 0.907 44 H 0.078 0.922 45 H 0.066 0.934 46 H 0.062 0.938 47 H 0.085 0.915 48 H 0.054 0.946 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.098 -6.695 -14.590 24.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 N -0.255 5.255 3 C -0.016 4.016 4 C -0.168 4.168 5 C -0.086 4.086 6 C -0.211 4.211 7 C 0.135 3.865 8 N -0.317 5.317 9 C -0.045 4.045 10 C 0.099 3.901 11 C -0.573 4.573 12 H 0.094 0.906 13 C -0.130 4.130 14 N -0.532 5.532 15 Si 0.699 3.301 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.190 1.190 19 C -0.242 4.242 20 C -0.070 4.070 21 C -0.067 4.067 22 C 0.033 3.967 23 C -0.199 4.199 24 C -0.193 4.193 25 C -0.095 4.095 26 N -0.114 5.114 27 H 0.089 0.911 28 H 0.102 0.898 29 H 0.040 0.960 30 H 0.095 0.905 31 H 0.053 0.947 32 H 0.126 0.874 33 H 0.145 0.855 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.045 0.955 38 H 0.045 0.955 39 H 0.075 0.925 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.061 0.939 43 H 0.111 0.889 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.081 0.919 47 H 0.104 0.896 48 H 0.073 0.927 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 16.319 -7.249 -13.772 22.550 hybrid contribution -0.537 1.347 -0.733 1.625 sum 15.782 -5.902 -14.505 22.233 Atomic orbital electron populations 1.22847 0.87141 1.03667 1.00796 1.62026 1.08249 1.14082 1.41179 1.20866 0.99280 0.86827 0.94584 1.19111 0.97229 1.04731 0.95766 1.20663 0.95293 0.96026 0.96637 1.20786 1.01207 1.06468 0.92592 1.17919 0.92274 0.90055 0.86227 1.46715 1.21556 1.54814 1.08599 1.21493 0.93321 0.99986 0.89729 1.19652 0.81666 0.91973 0.96766 1.21480 0.92461 0.97919 1.45488 0.90555 1.24906 0.96098 0.97458 0.94573 1.69905 1.01961 1.35266 1.46074 0.86917 0.78606 0.85803 0.78804 1.19934 1.20946 1.19008 1.20570 0.98389 1.06321 0.98906 1.20477 0.98083 0.96567 0.91826 1.22237 1.01520 0.90644 0.92337 1.18404 0.82962 0.96190 0.99143 1.21872 1.01259 1.00149 0.96670 1.21796 1.00402 1.01838 0.95243 1.29030 0.94862 0.92577 0.93074 1.81253 1.12372 1.09339 1.08387 0.91093 0.89759 0.95979 0.90492 0.94735 0.87447 0.85529 0.94539 0.91295 0.92340 0.95459 0.95548 0.92499 0.86773 0.87089 0.93885 0.88876 0.90316 0.91502 0.91928 0.89630 0.92694 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.05 8.76 60.06 0.53 0.58 16 2 N -0.53 -5.82 3.61 -244.37 -0.88 -6.71 16 3 C 0.11 1.22 5.09 -4.97 -0.03 1.19 16 4 C -0.17 -2.37 4.91 -104.59 -0.51 -2.88 16 5 C -0.07 -1.10 7.85 -39.61 -0.31 -1.41 16 6 C -0.19 -3.68 9.21 -39.38 -0.36 -4.04 16 7 C 0.24 4.73 6.55 -83.79 -0.55 4.18 16 8 N -0.61 -12.66 2.99 -181.00 -0.54 -13.20 16 9 C 0.10 1.67 10.19 59.85 0.61 2.28 16 10 C 0.22 5.18 3.98 -5.19 -0.02 5.16 16 11 C -0.53 -14.91 9.94 -34.44 -0.34 -15.25 16 12 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 13 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 14 N -0.89 -27.17 13.96 55.43 0.77 -26.39 16 15 Si 0.87 20.78 27.47 -169.99 -4.67 16.11 16 16 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 18 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 19 C -0.22 -3.63 9.21 -39.38 -0.36 -3.99 16 20 C -0.05 -0.73 9.69 -39.61 -0.38 -1.11 16 21 C 0.06 0.49 4.18 -3.82 -0.02 0.47 16 22 C 0.04 0.28 0.78 -157.29 -0.12 0.16 16 23 C -0.14 -0.69 8.43 37.16 0.31 -0.38 16 24 C -0.13 -1.01 8.30 37.16 0.31 -0.70 16 25 C 0.22 2.55 10.99 -20.76 -0.23 2.32 16 26 N -0.44 -6.38 17.49 42.16 0.74 -5.65 16 27 H 0.07 1.03 4.46 -51.93 -0.23 0.80 16 28 H 0.08 1.31 5.44 -51.93 -0.28 1.02 16 29 H 0.02 0.28 7.92 -51.93 -0.41 -0.13 16 30 H 0.08 0.69 7.76 -51.93 -0.40 0.29 16 31 H 0.03 0.37 8.06 -51.93 -0.42 -0.05 16 32 H 0.11 1.60 7.87 -52.49 -0.41 1.19 16 33 H 0.13 2.69 6.14 -52.49 -0.32 2.37 16 34 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 36 H 0.06 0.89 6.20 -51.93 -0.32 0.57 16 37 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 38 H 0.03 0.62 5.63 -51.93 -0.29 0.33 16 39 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.11 1.70 6.14 -52.49 -0.32 1.38 16 41 H 0.11 1.32 8.06 -52.48 -0.42 0.89 16 42 H 0.04 0.34 7.82 -51.93 -0.41 -0.07 16 43 H 0.09 0.51 7.70 -51.93 -0.40 0.11 16 44 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 45 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.08 0.86 7.32 -51.93 -0.38 0.48 16 48 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 386.73 15.07 5.83 5.83 Total: -1.00 -32.15 386.73 -8.27 -40.43 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -7.94 Total: 1.04 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: -1.58 Total: -11.47 kcal Atomic # 7 Polarization: -52.03 SS G_CDS: 0.09 Total: -51.94 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.11 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.15 -8.27 -40.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000816632966.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.390 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds