Wall clock time and date at job start Tue Mar 31 2020 11:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38239 * 120.00424 * 2 1 4 4 C 1.38226 * 120.00091 * 180.02562 * 3 2 1 5 5 C 1.38238 * 120.00371 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99959 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47120 * 90.00342 * 6 5 4 8 8 C 1.53118 * 109.52314 * 174.99767 * 7 6 5 9 9 C 1.53048 * 109.27756 * 177.55882 * 8 7 6 10 10 N 1.46845 * 109.51420 * 300.82396 * 9 8 7 11 11 C 1.46896 * 111.00070 * 185.83219 * 10 9 8 12 12 C 1.52997 * 109.46867 * 75.81316 * 11 10 9 13 13 H 1.08995 * 109.47610 * 303.71805 * 12 11 10 14 14 C 1.53004 * 109.47246 * 63.71983 * 12 11 10 15 15 C 1.53008 * 109.47367 * 183.71591 * 12 11 10 16 16 C 1.50694 * 109.47380 * 174.99889 * 15 12 11 17 17 H 1.08000 * 119.99875 * 0.02562 * 16 15 12 18 18 C 1.37877 * 120.00126 * 179.97438 * 16 15 12 19 19 N 1.31517 * 119.99817 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00031 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46852 * 60.00366 * 20 18 16 22 22 H 1.48503 * 109.46774 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.46974 * 300.00098 * 20 18 16 24 24 C 1.46826 * 111.20927 * 61.75053 * 10 9 8 25 25 C 1.53041 * 109.51770 * 298.24811 * 24 10 9 26 26 C 1.38233 * 119.99786 * 0.25471 * 5 4 3 27 27 C 1.38234 * 119.99795 * 359.47202 * 26 5 4 28 28 H 1.08995 * 109.47410 * 89.99527 * 1 2 3 29 29 H 1.08993 * 109.47176 * 210.00150 * 1 2 3 30 30 H 1.09009 * 109.46914 * 329.99811 * 1 2 3 31 31 H 1.08002 * 119.99345 * 359.97438 * 3 2 1 32 32 H 1.08001 * 119.99898 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.47231 * 330.00105 * 6 5 4 34 34 H 1.09005 * 109.46676 * 210.00316 * 6 5 4 35 35 H 1.09004 * 109.57679 * 54.83948 * 7 6 5 36 36 H 1.08999 * 109.50436 * 57.62009 * 8 7 6 37 37 H 1.08998 * 109.50426 * 297.49808 * 8 7 6 38 38 H 1.08997 * 109.46071 * 60.83938 * 9 8 7 39 39 H 1.08997 * 109.46181 * 180.81240 * 9 8 7 40 40 H 1.08992 * 109.47552 * 195.81810 * 11 10 9 41 41 H 1.09006 * 109.47118 * 315.81689 * 11 10 9 42 42 H 1.09004 * 109.46821 * 65.40409 * 14 12 11 43 43 H 1.08996 * 109.46971 * 185.40794 * 14 12 11 44 44 H 1.09003 * 109.46679 * 305.40945 * 14 12 11 45 45 H 1.08994 * 109.46995 * 295.00828 * 15 12 11 46 46 H 1.09002 * 109.46495 * 55.00179 * 15 12 11 47 47 H 0.97003 * 119.99838 * 179.97438 * 19 18 16 48 48 H 1.08996 * 109.46816 * 178.23455 * 24 10 9 49 49 H 1.09005 * 109.45931 * 58.25449 * 24 10 9 50 50 H 1.08999 * 109.50538 * 299.24043 * 25 24 10 51 51 H 1.09001 * 109.53877 * 179.13760 * 25 24 10 52 52 H 1.07994 * 120.00237 * 179.72649 * 26 5 4 53 53 H 1.08001 * 120.00013 * 180.27674 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5805 1.1971 -0.0005 5 6 4.2717 -0.0001 -0.0016 6 6 5.7787 -0.0001 -0.0028 7 6 6.2898 -0.0008 1.4393 8 6 7.8158 -0.1266 1.4412 9 6 8.3260 -0.0655 2.8829 10 7 7.9209 1.2073 3.4930 11 6 8.5098 1.3612 4.8300 12 6 9.9895 1.7262 4.6964 13 1 10.4987 0.9679 4.1016 14 6 10.1192 3.0864 4.0078 15 6 10.6252 1.7957 6.0864 16 6 12.1070 2.0338 5.9499 17 1 12.5509 2.1267 4.9697 18 6 12.8958 2.1340 7.0763 19 7 12.3551 2.0214 8.2698 20 14 14.7325 2.4299 6.9070 21 1 14.9637 3.7107 6.1919 22 1 15.3492 2.4984 8.2562 23 1 15.3444 1.3163 6.1384 24 6 6.4587 1.3296 3.5454 25 6 5.8927 1.3102 2.1236 26 6 3.5805 -1.1972 -0.0075 27 6 2.1982 -1.1972 -0.0012 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8901 0.5139 31 1 1.6582 2.1324 -0.0004 32 1 4.1206 2.1323 -0.0010 33 1 6.1416 0.8901 -0.5165 34 1 6.1416 -0.8899 -0.5174 35 1 5.8544 -0.8407 1.9807 36 1 8.2492 0.6921 0.8669 37 1 8.1031 -1.0780 0.9936 38 1 7.9030 -0.8926 3.4531 39 1 9.4133 -0.1403 2.8868 40 1 7.9876 2.1521 5.3682 41 1 8.4148 0.4242 5.3789 42 1 9.6945 3.8596 4.6481 43 1 11.1719 3.3027 3.8262 44 1 9.5834 3.0656 3.0588 45 1 10.1763 2.6130 6.6508 46 1 10.4551 0.8555 6.6111 47 1 12.9102 2.0916 9.0623 48 1 6.1898 2.2679 4.0304 49 1 6.0445 0.4959 4.1125 50 1 6.2958 2.1515 1.5599 51 1 4.8060 1.3856 2.1627 52 1 4.1204 -2.1325 -0.0128 53 1 1.6582 -2.1325 -0.0013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663998672.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:08 Heat of formation + Delta-G solvation = -15.734786 kcal Electronic energy + Delta-G solvation = -26034.144622 eV Core-core repulsion = 22675.520258 eV Total energy + Delta-G solvation = -3358.624364 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.01581 -38.85920 -36.10574 -34.31476 -32.68419 -31.66099 -31.20589 -30.64431 -28.98339 -26.83511 -26.08844 -24.69527 -23.26347 -22.90075 -22.69410 -21.62591 -20.66091 -19.57043 -18.76430 -16.39172 -16.32178 -15.77822 -15.52075 -15.34079 -14.86436 -14.46645 -14.32835 -14.20938 -14.05921 -13.75945 -13.62783 -13.44783 -13.27909 -12.70297 -12.60920 -12.50711 -12.28725 -12.07771 -11.88463 -11.80736 -11.41193 -11.34635 -11.16255 -11.12061 -11.08565 -10.82660 -10.78046 -10.62332 -10.34670 -10.29249 -10.22219 -10.09478 -9.53178 -9.12904 -9.05143 -8.91517 -8.65212 -8.28746 -7.91143 -5.93823 -3.94660 1.11170 1.18705 3.36769 3.40882 3.43572 3.51038 4.21651 4.48848 4.51513 4.53580 4.67056 4.74459 4.78729 4.84188 5.00776 5.03700 5.24619 5.26527 5.30322 5.34477 5.41746 5.44193 5.47855 5.50950 5.56608 5.62067 5.68736 5.72903 5.78207 5.83615 5.89909 5.96667 5.99620 6.01865 6.13480 6.18192 6.20205 6.22887 6.26036 6.36219 6.41115 6.46428 6.48721 6.63030 6.79168 6.80609 7.09449 7.22831 7.27258 7.49653 7.53508 7.74159 7.91223 8.06908 8.51516 9.11652 9.68352 11.17684 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.035496 B = 0.002031 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.623023 B =13782.210631 C =13993.952351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.096 4.096 3 C -0.120 4.120 4 C -0.111 4.111 5 C -0.079 4.079 6 C -0.076 4.076 7 C -0.080 4.080 8 C -0.110 4.110 9 C 0.055 3.945 10 N -0.533 5.533 11 C 0.061 3.939 12 C -0.078 4.078 13 H 0.054 0.946 14 C -0.121 4.121 15 C 0.027 3.973 16 C -0.511 4.511 17 H 0.055 0.945 18 C 0.054 3.946 19 N -0.898 5.898 20 Si 0.890 3.110 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.278 1.278 24 C 0.055 3.945 25 C -0.110 4.110 26 C -0.115 4.115 27 C -0.120 4.120 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.119 0.881 32 H 0.122 0.878 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.026 0.974 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.028 0.972 42 H 0.038 0.962 43 H 0.049 0.951 44 H 0.044 0.956 45 H 0.015 0.985 46 H 0.011 0.989 47 H 0.259 0.741 48 H 0.071 0.929 49 H 0.025 0.975 50 H 0.069 0.931 51 H 0.064 0.936 52 H 0.119 0.881 53 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.238 -5.160 -18.600 29.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.138 4.138 4 C -0.129 4.129 5 C -0.079 4.079 6 C -0.114 4.114 7 C -0.099 4.099 8 C -0.148 4.148 9 C -0.073 4.073 10 N -0.258 5.258 11 C -0.066 4.066 12 C -0.097 4.097 13 H 0.072 0.928 14 C -0.178 4.178 15 C -0.011 4.011 16 C -0.549 4.549 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.073 4.073 25 C -0.147 4.147 26 C -0.133 4.133 27 C -0.138 4.138 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.137 0.863 32 H 0.140 0.860 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.045 0.955 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.047 0.953 42 H 0.057 0.943 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.033 0.967 46 H 0.029 0.971 47 H 0.069 0.931 48 H 0.089 0.911 49 H 0.043 0.957 50 H 0.088 0.912 51 H 0.083 0.917 52 H 0.137 0.863 53 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -22.023 -4.776 -18.697 29.281 hybrid contribution 0.718 -0.543 0.679 1.127 sum -21.305 -5.319 -18.018 28.405 Atomic orbital electron populations 1.20777 0.91431 1.02689 1.02139 1.19900 0.95956 0.93303 1.00464 1.21026 0.94264 0.97430 1.01043 1.21077 0.94004 0.97775 1.00031 1.19916 0.95876 0.93042 0.99029 1.20687 0.90491 1.02889 0.97297 1.21168 0.95793 0.98383 0.94565 1.21643 0.94415 1.01766 0.96933 1.22084 1.01041 0.89910 0.94247 1.61947 1.07795 1.33268 1.22751 1.22299 0.97379 0.99509 0.87460 1.21169 0.91694 0.97006 0.99786 0.92787 1.21560 1.00713 0.96633 0.98932 1.19134 0.95069 0.96832 0.90038 1.21202 0.92984 1.48436 0.92296 0.92659 1.25026 0.98445 0.95684 0.95461 1.69960 1.35542 1.50862 0.97386 0.86693 0.85761 0.78759 0.76985 1.20296 1.21411 1.20340 1.22064 0.88369 1.00424 0.96418 1.21685 0.99764 0.97487 0.95789 1.21035 0.94070 0.97671 1.00567 1.21001 0.94216 0.97412 1.01172 0.91368 0.91686 0.91628 0.86277 0.85984 0.90825 0.91106 0.91633 0.90998 0.91928 0.95537 0.90184 0.91600 0.95324 0.94325 0.93182 0.93689 0.96672 0.97053 0.93103 0.91070 0.95659 0.91220 0.91746 0.86255 0.86375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.68 10.01 36.00 0.36 -0.32 16 2 C -0.10 -0.80 5.88 -104.62 -0.62 -1.41 16 3 C -0.12 -1.02 9.70 -39.59 -0.38 -1.40 16 4 C -0.11 -0.99 8.04 -39.59 -0.32 -1.31 16 5 C -0.08 -0.72 4.72 -104.63 -0.49 -1.21 16 6 C -0.08 -0.66 4.84 -27.89 -0.14 -0.79 16 7 C -0.08 -0.81 2.24 -90.50 -0.20 -1.01 16 8 C -0.11 -1.21 5.38 -26.65 -0.14 -1.35 16 9 C 0.06 0.76 5.29 -3.83 -0.02 0.74 16 10 N -0.53 -8.04 3.89 -234.69 -0.91 -8.95 16 11 C 0.06 1.08 4.41 -3.83 -0.02 1.07 16 12 C -0.08 -1.62 2.39 -90.62 -0.22 -1.84 16 13 H 0.05 1.15 6.73 -51.93 -0.35 0.80 16 14 C -0.12 -2.41 8.86 37.16 0.33 -2.08 16 15 C 0.03 0.70 4.45 -27.88 -0.12 0.57 16 16 C -0.51 -14.50 8.48 -34.44 -0.29 -14.79 16 17 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 18 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 20 Si 0.89 21.96 29.54 -169.99 -5.02 16.93 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C 0.06 0.72 5.42 -3.84 -0.02 0.70 16 25 C -0.11 -1.18 4.88 -26.65 -0.13 -1.31 16 26 C -0.12 -1.02 9.70 -39.58 -0.38 -1.41 16 27 C -0.12 -1.01 9.70 -39.58 -0.38 -1.40 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.34 8.09 -51.93 -0.42 -0.08 16 30 H 0.06 0.35 8.09 -51.92 -0.42 -0.07 16 31 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 32 H 0.12 0.97 8.04 -52.49 -0.42 0.55 16 33 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 34 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 1.21 6.67 -51.93 -0.35 0.86 16 40 H 0.07 1.18 7.79 -51.93 -0.40 0.77 16 41 H 0.03 0.53 8.00 -51.93 -0.42 0.11 16 42 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.05 1.05 7.11 -51.93 -0.37 0.68 16 44 H 0.04 0.81 7.56 -51.93 -0.39 0.41 16 45 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.07 0.93 7.93 -51.93 -0.41 0.51 16 49 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 50 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 51 H 0.06 0.66 6.45 -51.93 -0.33 0.33 16 52 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 53 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 407.48 15.07 6.14 6.14 Total: -1.00 -30.31 407.48 -12.47 -42.78 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -10.13 Total: -3.29 kcal Atomic # 6 Polarization: -23.77 SS G_CDS: -3.29 Total: -27.06 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: -0.18 Total: -35.51 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -30.31 -12.47 -42.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663998672.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.049 kcal (2) G-P(sol) polarization free energy of solvation -30.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds