Wall clock time and date at job start Tue Mar 31 2020 11:41:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38237 * 120.00010 * 2 1 4 4 C 1.38228 * 119.99795 * 179.97438 * 3 2 1 5 5 C 1.38239 * 120.00322 * 0.02562 * 4 3 2 6 6 C 1.50695 * 120.00385 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47139 * 90.00052 * 6 5 4 8 8 C 1.53114 * 109.52821 * 185.00145 * 7 6 5 9 9 C 1.53031 * 109.28184 * 182.44060 * 8 7 6 10 10 N 1.46848 * 109.52337 * 59.17971 * 9 8 7 11 11 C 1.46901 * 110.99899 * 174.16040 * 10 9 8 12 12 C 1.53003 * 109.46955 * 176.29777 * 11 10 9 13 13 H 1.09004 * 109.47177 * 301.81663 * 12 11 10 14 14 C 1.53001 * 109.46961 * 181.81990 * 12 11 10 15 15 C 1.52995 * 109.47573 * 61.81752 * 12 11 10 16 16 C 1.50695 * 109.47689 * 185.00100 * 15 12 11 17 17 H 1.08006 * 119.99388 * 0.02562 * 16 15 12 18 18 C 1.37876 * 120.00452 * 180.02562 * 16 15 12 19 19 N 1.31507 * 120.00295 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99737 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.46934 * 90.00343 * 20 18 16 22 22 H 1.48501 * 109.46979 * 209.99976 * 20 18 16 23 23 H 1.48492 * 109.47068 * 330.00115 * 20 18 16 24 24 C 1.46846 * 111.19520 * 298.25670 * 10 9 8 25 25 C 1.53037 * 109.52276 * 61.74698 * 24 10 9 26 26 C 1.38239 * 119.99719 * 0.25293 * 5 4 3 27 27 C 1.38234 * 119.99618 * 179.97438 * 2 1 3 28 28 H 1.08994 * 109.47189 * 89.99702 * 1 2 3 29 29 H 1.08994 * 109.46914 * 209.99838 * 1 2 3 30 30 H 1.09002 * 109.46564 * 330.00025 * 1 2 3 31 31 H 1.07996 * 120.00059 * 359.97438 * 3 2 1 32 32 H 1.08001 * 120.00219 * 179.97438 * 4 3 2 33 33 H 1.08994 * 109.47274 * 330.00415 * 6 5 4 34 34 H 1.08999 * 109.47182 * 209.99911 * 6 5 4 35 35 H 1.09007 * 109.57610 * 305.16266 * 7 6 5 36 36 H 1.08997 * 109.50478 * 62.49539 * 8 7 6 37 37 H 1.08998 * 109.50173 * 302.38701 * 8 7 6 38 38 H 1.08992 * 109.46291 * 299.16376 * 9 8 7 39 39 H 1.09000 * 109.45412 * 179.18944 * 9 8 7 40 40 H 1.09002 * 109.47016 * 296.29134 * 11 10 9 41 41 H 1.09004 * 109.47235 * 56.29621 * 11 10 9 42 42 H 1.08998 * 109.47038 * 294.55885 * 14 12 11 43 43 H 1.08997 * 109.47187 * 54.56226 * 14 12 11 44 44 H 1.09003 * 109.46933 * 174.56083 * 14 12 11 45 45 H 1.09003 * 109.47262 * 305.00287 * 15 12 11 46 46 H 1.09003 * 109.46891 * 64.99695 * 15 12 11 47 47 H 0.97000 * 120.00606 * 179.97438 * 19 18 16 48 48 H 1.09004 * 109.45668 * 181.75562 * 24 10 9 49 49 H 1.09000 * 109.46477 * 301.72632 * 24 10 9 50 50 H 1.08999 * 109.50355 * 180.88079 * 25 24 10 51 51 H 1.08996 * 109.53907 * 60.77954 * 25 24 10 52 52 H 1.07993 * 119.99980 * 179.72816 * 26 5 4 53 53 H 1.08001 * 120.00404 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2718 -0.0001 0.0005 6 6 5.7787 -0.0001 0.0005 7 6 6.2887 -0.0002 1.4430 8 6 7.8147 0.1256 1.4464 9 6 8.3237 0.0637 2.8882 10 7 7.9182 -1.2094 3.4976 11 6 8.5063 -1.3638 4.8349 12 6 7.9892 -2.6544 5.4735 13 1 6.9010 -2.6223 5.5277 14 6 8.5661 -2.7923 6.8838 15 6 8.4224 -3.8522 4.6258 16 6 7.8112 -5.1109 5.1852 17 1 7.1768 -5.0615 6.0579 18 6 8.0619 -6.3256 4.5830 19 7 7.5281 -7.4240 5.0709 20 14 9.1587 -6.4109 3.0733 21 1 10.5681 -6.6106 3.4961 22 1 8.7334 -7.5466 2.2161 23 1 9.0463 -5.1436 2.3076 24 6 6.4557 -1.3316 3.5486 25 6 5.8910 -1.3115 2.1263 26 6 3.5806 -1.1972 -0.0053 27 6 2.1982 -1.1972 0.0005 28 1 -0.3633 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3632 0.8900 0.5139 31 1 1.6583 2.1324 -0.0004 32 1 4.1206 2.1324 0.0001 33 1 6.1421 0.8898 -0.5132 34 1 6.1420 -0.8901 -0.5133 35 1 5.8529 0.8395 1.9846 36 1 8.1024 1.0771 0.9994 37 1 8.2485 -0.6928 0.8719 38 1 7.9003 0.8904 3.4586 39 1 9.4111 0.1385 2.8929 40 1 9.5922 -1.4097 4.7512 41 1 8.2253 -0.5132 5.4559 42 1 9.6468 -2.9215 6.8232 43 1 8.3391 -1.8945 7.4586 44 1 8.1235 -3.6594 7.3742 45 1 8.0867 -3.7107 3.5985 46 1 9.5090 -3.9364 4.6445 47 1 7.7042 -8.2786 4.6471 48 1 6.1865 -2.2703 4.0329 49 1 6.0411 -0.4983 4.1158 50 1 4.8043 -1.3865 2.1652 51 1 6.2939 -2.1526 1.5622 52 1 4.1205 -2.1325 -0.0097 53 1 1.6582 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663998673.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:12 Heat of formation + Delta-G solvation = -7.919140 kcal Electronic energy + Delta-G solvation = -26775.365834 eV Core-core repulsion = 23417.080382 eV Total energy + Delta-G solvation = -3358.285452 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.91243 -38.86403 -36.19967 -34.24204 -32.53581 -31.68969 -31.07272 -30.55495 -28.96259 -27.56909 -26.07836 -24.35858 -23.36919 -22.74848 -22.31347 -21.60918 -20.55477 -19.58135 -18.61895 -16.68639 -16.20297 -15.83525 -15.59429 -15.21059 -14.78111 -14.51113 -14.18841 -13.99914 -13.91806 -13.65778 -13.50513 -13.38078 -13.29851 -12.77035 -12.54886 -12.38786 -12.28910 -12.06202 -11.89825 -11.75771 -11.59773 -11.41357 -11.18743 -11.05881 -10.98444 -10.95879 -10.79265 -10.60106 -10.48397 -10.11311 -10.07282 -9.62415 -9.53241 -9.33042 -8.99034 -8.89545 -8.52590 -8.41693 -7.85189 -5.93100 -3.88712 1.23995 1.32040 3.39868 3.47028 3.55872 3.63973 4.25347 4.57229 4.59638 4.65816 4.78906 4.87000 4.90630 4.94303 5.10042 5.13940 5.35188 5.36877 5.40131 5.42483 5.47300 5.51050 5.56071 5.62217 5.62922 5.66932 5.71062 5.76858 5.80386 5.91104 5.93989 5.98908 6.01065 6.08560 6.10429 6.18388 6.23089 6.29430 6.30853 6.35612 6.41620 6.49545 6.52233 6.57067 6.62577 6.87812 6.93793 7.01021 7.13496 7.49224 7.50851 7.57702 7.70699 7.95465 8.66871 9.12865 9.71406 11.20508 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.012355 B = 0.003313 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.697662 B = 8450.658857 C = 9394.008833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.096 4.096 3 C -0.122 4.122 4 C -0.117 4.117 5 C -0.079 4.079 6 C -0.076 4.076 7 C -0.080 4.080 8 C -0.110 4.110 9 C 0.057 3.943 10 N -0.529 5.529 11 C 0.062 3.938 12 C -0.081 4.081 13 H 0.063 0.937 14 C -0.133 4.133 15 C -0.002 4.002 16 C -0.512 4.512 17 H 0.069 0.931 18 C 0.065 3.935 19 N -0.909 5.909 20 Si 0.875 3.125 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.260 1.260 24 C 0.051 3.949 25 C -0.111 4.111 26 C -0.109 4.109 27 C -0.118 4.118 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.025 0.975 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.018 0.982 42 H 0.046 0.954 43 H 0.030 0.970 44 H 0.065 0.935 45 H 0.032 0.968 46 H 0.005 0.995 47 H 0.260 0.740 48 H 0.094 0.906 49 H 0.022 0.978 50 H 0.066 0.934 51 H 0.072 0.928 52 H 0.124 0.876 53 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.872 19.842 -10.964 23.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.140 4.140 4 C -0.135 4.135 5 C -0.079 4.079 6 C -0.114 4.114 7 C -0.099 4.099 8 C -0.148 4.148 9 C -0.071 4.071 10 N -0.254 5.254 11 C -0.065 4.065 12 C -0.100 4.100 13 H 0.082 0.918 14 C -0.191 4.191 15 C -0.039 4.039 16 C -0.550 4.550 17 H 0.087 0.913 18 C -0.135 4.135 19 N -0.549 5.549 20 Si 0.703 3.297 21 H -0.207 1.207 22 H -0.218 1.218 23 H -0.184 1.184 24 C -0.076 4.076 25 C -0.149 4.149 26 C -0.127 4.127 27 C -0.136 4.136 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.043 0.957 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.037 0.963 42 H 0.065 0.935 43 H 0.049 0.951 44 H 0.084 0.916 45 H 0.050 0.950 46 H 0.024 0.976 47 H 0.070 0.930 48 H 0.112 0.888 49 H 0.040 0.960 50 H 0.084 0.916 51 H 0.091 0.909 52 H 0.142 0.858 53 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.702 19.282 -11.288 23.634 hybrid contribution 0.310 0.433 -0.192 0.566 sum -7.392 19.715 -11.480 23.982 Atomic orbital electron populations 1.20777 0.91461 1.02697 1.02084 1.19895 0.95937 0.93295 1.00490 1.20968 0.94189 0.97340 1.01472 1.20995 0.94054 0.97537 1.00905 1.19893 0.95796 0.93039 0.99142 1.20681 0.90638 1.02763 0.97273 1.21173 0.95403 0.98634 0.94660 1.21626 0.94936 1.01586 0.96633 1.22026 0.99965 0.90297 0.94840 1.61881 1.09290 1.32212 1.21975 1.22260 0.99308 0.97365 0.87598 1.21165 0.99593 0.94172 0.95023 0.91839 1.21694 1.00644 1.00292 0.96429 1.19545 0.95629 0.92586 0.96141 1.21232 1.29765 0.90187 1.13808 0.91264 1.24998 0.95730 0.95752 0.97054 1.69921 1.45377 0.98366 1.41270 0.86832 0.81018 0.77909 0.83962 1.20666 1.21792 1.18427 1.22193 0.87238 1.01668 0.96536 1.21698 1.00056 0.97185 0.95968 1.21138 0.94078 0.97925 0.99539 1.21061 0.94302 0.97507 1.00730 0.91418 0.91546 0.91755 0.86469 0.86405 0.91287 0.90768 0.91744 0.92082 0.90927 0.95720 0.91203 0.91381 0.96338 0.93522 0.95109 0.91555 0.94998 0.97630 0.93021 0.88805 0.96003 0.91578 0.90928 0.85775 0.86142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 36.01 0.36 -0.49 16 2 C -0.10 -0.96 5.88 -104.62 -0.62 -1.58 16 3 C -0.12 -1.19 9.70 -39.59 -0.38 -1.57 16 4 C -0.12 -1.18 9.70 -39.58 -0.38 -1.57 16 5 C -0.08 -0.85 4.72 -104.62 -0.49 -1.34 16 6 C -0.08 -0.77 4.84 -27.89 -0.14 -0.91 16 7 C -0.08 -0.92 2.24 -90.50 -0.20 -1.12 16 8 C -0.11 -1.26 5.38 -26.66 -0.14 -1.41 16 9 C 0.06 0.75 5.46 -3.84 -0.02 0.73 16 10 N -0.53 -8.57 3.99 -234.67 -0.94 -9.51 16 11 C 0.06 1.04 4.55 -3.82 -0.02 1.03 16 12 C -0.08 -1.60 1.85 -90.62 -0.17 -1.77 16 13 H 0.06 1.29 6.08 -51.93 -0.32 0.98 16 14 C -0.13 -2.48 8.91 37.16 0.33 -2.15 16 15 C 0.00 -0.04 3.36 -27.89 -0.09 -0.13 16 16 C -0.51 -14.54 9.03 -34.44 -0.31 -14.85 16 17 H 0.07 2.11 7.31 -52.48 -0.38 1.73 16 18 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 19 N -0.91 -28.43 13.96 55.43 0.77 -27.65 16 20 Si 0.88 22.32 27.47 -169.99 -4.67 17.65 16 21 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 23 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 24 C 0.05 0.81 4.99 -3.83 -0.02 0.79 16 25 C -0.11 -1.54 4.89 -26.65 -0.13 -1.67 16 26 C -0.11 -1.22 8.06 -39.58 -0.32 -1.54 16 27 C -0.12 -1.26 9.70 -39.58 -0.38 -1.64 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 30 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 31 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.07 0.61 8.09 -51.93 -0.42 0.19 16 34 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 35 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.88 8.12 -51.93 -0.42 0.46 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.07 1.37 7.12 -51.93 -0.37 1.00 16 45 H 0.03 0.79 6.52 -51.93 -0.34 0.45 16 46 H 0.01 0.13 7.57 -51.93 -0.39 -0.26 16 47 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 48 H 0.09 1.71 5.74 -51.93 -0.30 1.41 16 49 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 50 H 0.07 0.89 6.46 -51.93 -0.34 0.56 16 51 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 52 H 0.12 1.36 8.05 -52.49 -0.42 0.94 16 53 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 402.27 15.07 6.06 6.06 Total: -1.00 -31.04 402.27 -12.04 -43.09 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -10.04 Total: -0.25 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: -3.23 Total: -29.39 kcal Atomic # 7 Polarization: -37.00 SS G_CDS: -0.16 Total: -37.16 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.67 Total: 17.65 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.04 -12.04 -43.09 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663998673.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.167 kcal (2) G-P(sol) polarization free energy of solvation -31.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds