Wall clock time and date at job start Tue Mar 31 2020 11:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46894 * 109.47372 * 2 1 4 4 C 1.46899 * 111.00154 * 66.04631 * 3 2 1 5 5 C 1.53004 * 109.46858 * 65.42940 * 4 3 2 6 6 C 1.46904 * 111.00165 * 190.00712 * 3 2 1 7 7 C 1.52999 * 109.47361 * 164.28468 * 6 3 2 8 8 H 1.09002 * 109.47398 * 60.37832 * 7 6 3 9 9 F 1.39905 * 109.46899 * 300.37924 * 7 6 3 10 10 C 1.50699 * 109.47217 * 180.38210 * 7 6 3 11 11 O 1.21281 * 119.99925 * 44.99334 * 10 7 6 12 12 N 1.34775 * 119.99694 * 224.99628 * 10 7 6 13 13 C 1.46504 * 119.99379 * 179.97438 * 12 10 7 14 14 H 1.08991 * 110.64343 * 325.69899 * 13 12 10 15 15 C 1.55159 * 110.72021 * 88.84429 * 13 12 10 16 16 C 1.55124 * 101.48502 * 153.72914 * 15 13 12 17 17 N 1.47426 * 104.94362 * 323.22054 * 16 15 13 18 18 C 1.36933 * 125.64989 * 203.96524 * 17 16 15 19 19 H 1.07993 * 120.00185 * 167.37463 * 18 17 16 20 20 C 1.38810 * 119.99784 * 347.37540 * 18 17 16 21 21 N 1.31619 * 120.00276 * 0.98765 * 20 18 17 22 22 Si 1.86805 * 119.99837 * 180.98619 * 20 18 17 23 23 H 1.48502 * 109.47101 * 94.98754 * 22 20 18 24 24 H 1.48501 * 109.47181 * 214.98202 * 22 20 18 25 25 H 1.48497 * 109.47203 * 334.98312 * 22 20 18 26 26 C 1.47028 * 108.70159 * 24.00691 * 17 16 15 27 27 H 1.09002 * 110.00817 * 239.44735 * 26 17 16 28 28 C 1.52997 * 109.88505 * 118.35590 * 26 17 16 29 29 H 1.08997 * 109.46894 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46663 * 299.99709 * 1 2 3 31 31 H 1.08993 * 109.47119 * 60.00004 * 1 2 3 32 32 H 1.09004 * 109.47403 * 120.00435 * 2 1 3 33 33 H 1.09011 * 109.46773 * 239.99739 * 2 1 3 34 34 H 1.08998 * 109.47059 * 185.42299 * 4 3 2 35 35 H 1.08998 * 109.47386 * 305.42820 * 4 3 2 36 36 H 1.08994 * 109.47470 * 58.80697 * 5 4 3 37 37 H 1.08998 * 109.47089 * 178.81688 * 5 4 3 38 38 H 1.09007 * 109.46327 * 298.81074 * 5 4 3 39 39 H 1.09000 * 109.46516 * 284.27750 * 6 3 2 40 40 H 1.09001 * 109.47366 * 44.27747 * 6 3 2 41 41 H 0.96992 * 119.99973 * 359.97438 * 12 10 7 42 42 H 1.08991 * 111.00506 * 271.93809 * 15 13 12 43 43 H 1.09007 * 111.00167 * 35.79116 * 15 13 12 44 44 H 1.09003 * 110.41862 * 204.29380 * 16 15 13 45 45 H 1.08995 * 110.29951 * 82.09260 * 16 15 13 46 46 H 0.97005 * 120.00256 * 180.02562 * 21 20 18 47 47 H 1.08997 * 109.46841 * 302.19337 * 28 26 17 48 48 H 1.09003 * 109.47203 * 62.18649 * 28 26 17 49 49 H 1.08995 * 109.47588 * 182.18891 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6703 2.0669 1.2533 5 6 2.4104 1.4051 2.4175 6 6 3.4686 1.4310 -0.2383 7 6 3.8777 2.8552 -0.6193 8 1 3.6273 3.5354 0.1948 9 9 3.1949 3.2425 -1.7774 10 6 5.3626 2.9005 -0.8730 11 8 5.8906 2.0354 -1.5391 12 7 6.1036 3.9023 -0.3595 13 6 7.5472 3.9459 -0.6056 14 1 7.9605 2.9382 -0.6473 15 6 7.8579 4.7213 -1.9131 16 6 9.2949 5.2345 -1.6337 17 7 9.3077 5.5659 -0.1973 18 6 10.1553 6.4539 0.4094 19 1 9.9602 6.7828 1.4193 20 6 11.2653 6.9314 -0.2738 21 7 11.4924 6.5456 -1.5115 22 14 12.4367 8.1216 0.5634 23 1 13.5687 7.3662 1.1577 24 1 12.9574 9.0889 -0.4358 25 1 11.7151 8.8557 1.6337 26 6 8.2603 4.7842 0.4762 27 1 7.5466 5.4532 0.9571 28 6 8.8907 3.8595 1.5195 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.8934 -0.5139 -0.8901 34 1 1.9590 3.1160 1.1888 35 1 0.5953 1.9953 1.4185 36 1 3.4848 1.4579 2.2421 37 1 2.1675 1.9243 3.3445 38 1 2.1059 0.3613 2.4951 39 1 3.9954 1.1318 0.6678 40 1 3.7253 0.7498 -1.0496 41 1 5.6812 4.5942 0.1730 42 1 7.8385 4.0558 -2.7760 43 1 7.1666 5.5532 -2.0476 44 1 9.5041 6.1228 -2.2299 45 1 10.0240 4.4535 -1.8494 46 1 12.2683 6.8790 -1.9889 47 1 9.6160 3.2061 1.0347 48 1 9.3923 4.4582 2.2798 49 1 8.1131 3.2557 1.9871 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692166320.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:43 Heat of formation + Delta-G solvation = -55.315123 kcal Electronic energy + Delta-G solvation = -27547.224123 eV Core-core repulsion = 23652.573858 eV Total energy + Delta-G solvation = -3894.650264 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.206 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -47.79752 -39.78944 -38.70723 -37.55100 -34.15063 -32.43420 -31.96826 -31.26609 -30.41333 -29.03198 -28.05836 -25.25486 -24.49697 -24.03150 -23.11813 -20.76871 -20.27902 -20.09031 -19.64651 -17.85681 -17.04312 -16.80378 -16.16093 -16.05899 -15.77122 -15.38695 -14.71867 -14.60904 -14.25393 -14.13465 -13.92755 -13.50456 -13.46127 -13.44692 -12.87213 -12.75874 -12.52661 -12.32142 -12.16868 -12.07199 -12.04845 -11.77161 -11.61268 -11.52344 -11.13764 -11.09726 -10.91506 -10.87479 -10.82675 -10.63392 -10.41860 -10.09739 -9.86957 -9.73671 -9.62325 -8.78800 -8.64954 -8.62441 -6.86416 -5.77047 -3.14147 2.44736 2.91565 3.36913 3.42111 3.44297 3.62111 4.22606 4.42581 4.46457 4.52313 4.55718 4.72852 4.81034 4.89492 4.95333 5.07820 5.20269 5.21596 5.25759 5.34857 5.38582 5.46659 5.53986 5.56621 5.59421 5.65033 5.68841 5.75843 5.78835 5.95991 6.07476 6.16796 6.25164 6.29056 6.45354 6.54758 6.62746 6.66185 6.70995 6.82837 7.04216 7.48346 7.51483 7.58437 7.77166 8.14646 8.24333 9.15132 9.76040 10.42936 11.33998 Molecular weight = 315.21amu Principal moments of inertia in cm(-1) A = 0.029996 B = 0.002614 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.241733 B =10709.401932 C =11157.085700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 N -0.531 5.531 4 C 0.039 3.961 5 C -0.198 4.198 6 C 0.032 3.968 7 C 0.093 3.907 8 H 0.094 0.906 9 F -0.181 7.181 10 C 0.491 3.509 11 O -0.523 6.523 12 N -0.705 5.705 13 C 0.133 3.867 14 H 0.095 0.905 15 C -0.156 4.156 16 C 0.172 3.828 17 N -0.594 5.594 18 C -0.228 4.228 19 H 0.076 0.924 20 C -0.005 4.005 21 N -0.917 5.917 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.156 3.844 27 H 0.035 0.965 28 C -0.154 4.154 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.060 0.940 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.099 0.901 41 H 0.400 0.600 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.080 0.920 45 H 0.026 0.974 46 H 0.254 0.746 47 H 0.052 0.948 48 H 0.055 0.945 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.589 -10.467 6.116 23.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.080 4.080 3 N -0.255 5.255 4 C -0.088 4.088 5 C -0.256 4.256 6 C -0.097 4.097 7 C 0.053 3.947 8 H 0.112 0.888 9 F -0.161 7.161 10 C 0.273 3.727 11 O -0.398 6.398 12 N -0.356 5.356 13 C 0.029 3.971 14 H 0.113 0.887 15 C -0.195 4.195 16 C 0.047 3.953 17 N -0.319 5.319 18 C -0.356 4.356 19 H 0.094 0.906 20 C -0.202 4.202 21 N -0.564 5.564 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.047 3.953 27 H 0.053 0.947 28 C -0.214 4.214 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.117 0.883 41 H 0.234 0.766 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.098 0.902 45 H 0.044 0.956 46 H 0.064 0.936 47 H 0.071 0.929 48 H 0.074 0.926 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -20.246 -10.707 5.145 23.473 hybrid contribution 0.916 0.571 1.333 1.715 sum -19.329 -10.137 6.477 22.767 Atomic orbital electron populations 1.21796 0.94652 1.01564 1.02575 1.22126 0.96241 0.88416 1.01191 1.62144 1.12552 1.16630 1.34172 1.22312 1.00925 0.98593 0.87007 1.22462 1.01567 1.01735 0.99867 1.22586 0.88884 0.95517 1.02729 1.21464 0.88393 0.98460 0.86373 0.88807 1.92902 1.80148 1.92236 1.50845 1.20818 0.88870 0.82388 0.80644 1.90730 1.73138 1.38113 1.37845 1.46156 1.09461 1.26700 1.53240 1.22228 0.77754 1.00523 0.96613 0.88716 1.23460 1.01090 0.99003 0.95992 1.21528 0.88812 0.99397 0.85547 1.44450 1.37878 1.46333 1.03286 1.18955 1.01597 1.16738 0.98307 0.90624 1.24893 0.97779 1.00733 0.96747 1.69926 1.29140 1.47291 1.09995 0.86116 0.81163 0.80225 0.78333 1.21573 1.21679 1.20598 1.21009 0.91553 0.91339 0.91356 0.94723 1.22231 0.99950 0.99497 0.99698 0.92283 0.92661 0.91676 0.94299 0.90554 0.90563 0.89941 0.92084 0.91669 0.92294 0.91789 0.88300 0.76552 0.91751 0.91907 0.90169 0.95598 0.93592 0.92860 0.92560 0.94545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.85 37.16 0.37 -0.59 16 2 C 0.05 0.37 5.51 -3.83 -0.02 0.34 16 3 N -0.53 -4.76 4.59 -234.62 -1.08 -5.84 16 4 C 0.04 0.28 5.72 -3.82 -0.02 0.26 16 5 C -0.20 -1.30 9.27 37.16 0.34 -0.95 16 6 C 0.03 0.32 4.33 -3.82 -0.02 0.31 16 7 C 0.09 1.06 3.76 -27.88 -0.10 0.95 16 8 H 0.09 0.79 6.66 -51.93 -0.35 0.45 16 9 F -0.18 -2.51 16.98 2.25 0.04 -2.47 16 10 C 0.49 7.09 7.17 -10.99 -0.08 7.01 16 11 O -0.52 -9.51 16.19 5.56 0.09 -9.42 16 12 N -0.70 -9.90 5.19 -52.03 -0.27 -10.17 16 13 C 0.13 2.35 2.79 -66.09 -0.18 2.17 16 14 H 0.09 1.80 7.33 -51.93 -0.38 1.42 16 15 C -0.16 -3.05 6.79 -24.46 -0.17 -3.22 16 16 C 0.17 4.14 5.46 -2.41 -0.01 4.13 16 17 N -0.59 -14.52 3.13 -162.44 -0.51 -15.02 16 18 C -0.23 -6.10 9.86 -15.06 -0.15 -6.25 16 19 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 20 C 0.00 -0.13 5.48 -17.43 -0.10 -0.22 16 21 N -0.92 -26.45 10.48 55.49 0.58 -25.87 16 22 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 C 0.16 3.02 3.48 -66.95 -0.23 2.79 16 27 H 0.04 0.65 7.70 -51.93 -0.40 0.25 16 28 C -0.15 -2.79 9.13 37.16 0.34 -2.45 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.33 6.44 -51.93 -0.33 0.00 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.04 0.28 6.22 -51.93 -0.32 -0.05 16 33 H 0.08 0.61 7.86 -51.92 -0.41 0.20 16 34 H 0.08 0.54 6.76 -51.93 -0.35 0.18 16 35 H 0.08 0.53 6.24 -51.93 -0.32 0.21 16 36 H 0.06 0.44 6.08 -51.93 -0.32 0.13 16 37 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.38 6.47 -51.92 -0.34 0.05 16 39 H 0.06 0.60 5.68 -51.93 -0.30 0.30 16 40 H 0.10 1.15 7.57 -51.93 -0.39 0.76 16 41 H 0.40 4.52 8.23 -40.82 -0.34 4.18 16 42 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 44 H 0.08 2.14 6.75 -51.93 -0.35 1.79 16 45 H 0.03 0.68 8.11 -51.93 -0.42 0.26 16 46 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 47 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.06 1.06 8.04 -51.93 -0.42 0.64 16 49 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 381.29 15.07 5.75 5.75 Total: -1.00 -31.28 381.29 -8.69 -39.97 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -8.24 Total: 2.20 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -0.03 Total: 4.27 kcal Atomic # 7 Polarization: -55.63 SS G_CDS: -1.27 Total: -56.91 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.04 Total: -2.47 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.28 -8.69 -39.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692166320.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.342 kcal (2) G-P(sol) polarization free energy of solvation -31.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds