Wall clock time and date at job start Tue Mar 31 2020 10:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.51127 * 2 1 4 4 C 1.53037 * 109.50541 * 120.08718 * 2 1 3 5 5 N 1.46849 * 109.52679 * 179.15674 * 4 2 1 6 6 C 1.46894 * 111.00036 * 174.15598 * 5 4 2 7 7 C 1.53001 * 109.47170 * 178.16144 * 6 5 4 8 8 C 1.52993 * 109.47018 * 35.11073 * 7 6 5 9 9 C 1.53004 * 109.46937 * 275.11164 * 7 6 5 10 10 C 1.52997 * 109.47517 * 155.11167 * 7 6 5 11 11 C 1.50697 * 109.47625 * 179.97438 * 10 7 6 12 12 H 1.08004 * 119.99603 * 359.97438 * 11 10 7 13 13 C 1.37875 * 120.00426 * 179.97438 * 11 10 7 14 14 N 1.31519 * 119.99852 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99986 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47420 * 60.00300 * 15 13 11 17 17 H 1.48507 * 109.46885 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47379 * 299.99779 * 15 13 11 19 19 C 1.46846 * 111.19612 * 298.25198 * 5 4 2 20 20 C 1.53045 * 109.52205 * 61.74220 * 19 5 4 21 21 C 1.53119 * 109.27690 * 300.82051 * 20 19 5 22 22 H 1.09003 * 109.57334 * 297.71917 * 21 20 19 23 23 C 1.50703 * 109.51840 * 177.55958 * 21 20 19 24 24 C 1.38234 * 120.00089 * 300.03724 * 23 21 20 25 25 C 1.38233 * 119.99712 * 179.78937 * 24 23 21 26 26 C 1.38235 * 120.00298 * 0.47170 * 25 24 23 27 27 C 1.38236 * 119.99749 * 359.75931 * 26 25 24 28 28 C 1.38231 * 120.00141 * 0.03028 * 27 26 25 29 29 H 1.09000 * 109.46528 * 299.92168 * 1 2 3 30 30 H 1.08991 * 109.47081 * 59.91585 * 1 2 3 31 31 H 1.08998 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46612 * 59.13448 * 4 2 1 33 33 H 1.09010 * 109.45748 * 299.17004 * 4 2 1 34 34 H 1.09004 * 109.47276 * 58.15835 * 6 5 4 35 35 H 1.08997 * 109.47451 * 298.15905 * 6 5 4 36 36 H 1.08997 * 109.47431 * 180.02562 * 8 7 6 37 37 H 1.09005 * 109.47377 * 300.00390 * 8 7 6 38 38 H 1.09002 * 109.47378 * 60.00444 * 8 7 6 39 39 H 1.08997 * 109.46861 * 285.85455 * 9 7 6 40 40 H 1.08996 * 109.47209 * 45.85753 * 9 7 6 41 41 H 1.09003 * 109.46611 * 165.85797 * 9 7 6 42 42 H 1.09006 * 109.46985 * 59.99680 * 10 7 6 43 43 H 1.09006 * 109.47068 * 300.00608 * 10 7 6 44 44 H 0.96996 * 119.99556 * 179.97438 * 14 13 11 45 45 H 1.08995 * 109.46127 * 181.75693 * 19 5 4 46 46 H 1.08997 * 109.46585 * 301.72644 * 19 5 4 47 47 H 1.09000 * 109.50326 * 180.87586 * 20 19 5 48 48 H 1.08999 * 109.50031 * 60.76031 * 20 19 5 49 49 H 1.07996 * 119.99839 * 0.02562 * 24 23 21 50 50 H 1.07999 * 120.00096 * 180.25342 * 25 24 23 51 51 H 1.07997 * 120.00348 * 179.78983 * 26 25 24 52 52 H 1.07996 * 120.00187 * 179.97438 * 27 26 25 53 53 H 1.07998 * 120.00307 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0410 -0.7232 1.2482 5 7 3.5093 -0.7411 1.2385 6 6 4.0372 -1.3045 2.4882 7 6 5.5651 -1.3489 2.4222 8 6 6.0776 -0.1347 1.6454 9 6 6.0079 -2.6312 1.7146 10 6 6.1378 -1.3256 3.8408 11 6 7.6427 -1.3700 3.7759 12 1 8.1409 -1.4113 2.8185 13 6 8.3836 -1.3581 4.9386 14 7 7.7769 -1.3083 6.1044 15 14 10.2491 -1.4124 4.8580 16 1 10.7465 -0.2341 4.1035 17 1 10.8049 -1.3886 6.2349 18 1 10.6788 -2.6571 4.1716 19 6 4.0237 -1.4718 0.0732 20 6 3.5719 -0.7711 -1.2102 21 6 2.0420 -0.7237 -1.2485 22 1 1.6456 -1.7389 -1.2694 23 6 1.5919 0.0181 -2.4807 24 6 1.9716 1.3333 -2.6729 25 6 1.5624 2.0124 -3.8053 26 6 0.7654 1.3793 -4.7407 27 6 0.3818 0.0656 -4.5462 28 6 0.7946 -0.6148 -3.4159 29 1 -0.3632 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6653 -1.7463 1.2545 33 1 1.6900 -0.2021 2.1390 34 1 3.6498 -2.3143 2.6237 35 1 3.7278 -0.6811 3.3270 36 1 7.1661 -0.1665 1.5979 37 1 5.6696 -0.1512 0.6347 38 1 5.7622 0.7788 2.1495 39 1 5.8682 -3.4814 2.3821 40 1 5.4105 -2.7741 0.8142 41 1 7.0606 -2.5514 1.4433 42 1 5.7727 -2.1908 4.3943 43 1 5.8223 -0.4121 4.3450 44 1 8.2982 -1.3003 6.9224 45 1 5.1128 -1.4945 0.1106 46 1 3.6388 -2.4915 0.0850 47 1 3.9408 -1.3224 -2.0750 48 1 3.9681 0.2442 -1.2291 49 1 2.5911 1.8291 -1.9403 50 1 1.8623 3.0386 -3.9575 51 1 0.4429 1.9109 -5.6238 52 1 -0.2411 -0.4289 -5.2767 53 1 0.4946 -1.6411 -3.2637 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093668356.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:40 Heat of formation + Delta-G solvation = 18.077981 kcal Electronic energy + Delta-G solvation = -27320.216056 eV Core-core repulsion = 23963.057924 eV Total energy + Delta-G solvation = -3357.158132 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.34322 -38.90564 -36.69346 -33.76803 -32.40426 -31.94461 -31.06234 -30.14063 -27.46692 -26.40346 -26.27542 -25.96277 -23.80927 -22.85005 -22.30419 -21.71456 -20.93798 -19.36581 -17.87916 -17.08430 -16.15254 -15.75185 -15.37328 -15.16078 -14.78551 -14.43888 -14.32931 -14.24474 -14.08376 -13.55076 -13.17877 -13.12421 -13.00599 -12.92420 -12.54936 -12.31782 -12.07150 -11.84957 -11.75427 -11.48163 -11.44048 -11.28244 -11.06859 -10.93971 -10.78469 -10.72728 -10.59761 -10.46690 -10.41469 -10.21049 -10.08990 -9.80154 -9.63941 -9.06837 -8.88764 -8.80497 -8.69605 -8.28472 -7.92981 -5.93281 -3.93216 1.22042 1.25173 3.36259 3.40853 3.43043 3.63745 4.18455 4.50845 4.52603 4.57822 4.83387 4.84241 4.92889 4.98954 5.07544 5.25428 5.35105 5.39040 5.42273 5.44185 5.51117 5.54735 5.65991 5.67180 5.71191 5.80099 5.81746 5.84889 5.90626 5.95260 5.99636 6.05973 6.10509 6.16346 6.20358 6.31700 6.33744 6.35113 6.38760 6.42509 6.45905 6.59420 6.65757 6.81888 6.86469 6.91608 7.21914 7.28541 7.33086 7.49307 7.52631 7.73180 7.90485 8.06998 8.51729 9.11962 9.69350 11.18376 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.026488 B = 0.002674 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.814396 B =10467.462268 C =10899.417357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.077 4.077 3 H 0.080 0.920 4 C 0.059 3.941 5 N -0.529 5.529 6 C 0.066 3.934 7 C -0.059 4.059 8 C -0.122 4.122 9 C -0.146 4.146 10 C 0.036 3.964 11 C -0.505 4.505 12 H 0.057 0.943 13 C 0.054 3.946 14 N -0.898 5.898 15 Si 0.887 3.113 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.278 1.278 19 C 0.033 3.967 20 C -0.109 4.109 21 C -0.045 4.045 22 H 0.072 0.928 23 C -0.063 4.063 24 C -0.113 4.113 25 C -0.119 4.119 26 C -0.131 4.131 27 C -0.121 4.121 28 C -0.120 4.120 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.027 0.973 33 H 0.073 0.927 34 H 0.024 0.976 35 H 0.071 0.929 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.043 0.957 39 H 0.045 0.955 40 H 0.046 0.954 41 H 0.056 0.944 42 H 0.012 0.988 43 H 0.015 0.985 44 H 0.259 0.741 45 H 0.112 0.888 46 H 0.026 0.974 47 H 0.063 0.937 48 H 0.073 0.927 49 H 0.124 0.876 50 H 0.119 0.881 51 H 0.117 0.883 52 H 0.118 0.882 53 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.192 2.770 -19.290 25.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 H 0.098 0.902 4 C -0.069 4.069 5 N -0.253 5.253 6 C -0.061 4.061 7 C -0.059 4.059 8 C -0.179 4.179 9 C -0.203 4.203 10 C -0.001 4.001 11 C -0.544 4.544 12 H 0.075 0.925 13 C -0.146 4.146 14 N -0.538 5.538 15 Si 0.716 3.284 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.204 1.204 19 C -0.094 4.094 20 C -0.146 4.146 21 C -0.064 4.064 22 H 0.090 0.910 23 C -0.063 4.063 24 C -0.131 4.131 25 C -0.137 4.137 26 C -0.149 4.149 27 C -0.139 4.139 28 C -0.138 4.138 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.042 0.958 35 H 0.090 0.910 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.030 0.970 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.130 0.870 46 H 0.044 0.956 47 H 0.082 0.918 48 H 0.091 0.909 49 H 0.142 0.858 50 H 0.137 0.863 51 H 0.135 0.865 52 H 0.136 0.864 53 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.993 3.250 -19.119 25.137 hybrid contribution 0.692 -0.918 0.225 1.172 sum -15.300 2.332 -18.894 24.424 Atomic orbital electron populations 1.21798 0.95235 1.01556 1.01695 1.21181 0.94844 1.00295 0.93263 0.90170 1.22113 0.88607 0.98383 0.97779 1.62043 1.06297 1.54182 1.02777 1.22299 0.96613 0.96681 0.90485 1.20632 0.91064 0.94743 0.99487 1.21824 1.00220 0.97221 0.98606 1.22257 1.01261 0.97761 0.98983 1.19142 0.95383 0.96867 0.88727 1.21198 0.91609 1.49457 0.92122 0.92470 1.25013 0.98162 0.95766 0.95675 1.69958 1.35261 1.51356 0.97229 0.86735 0.86322 0.78509 0.76877 1.20336 1.21469 1.20409 1.22821 1.02734 0.94111 0.89718 1.21710 0.93638 1.02034 0.97267 1.20320 0.96293 0.98273 0.91512 0.91003 1.19895 0.96460 0.94258 0.95695 1.21074 1.00034 0.94303 0.97640 1.21152 0.98170 0.99876 0.94478 1.21102 0.99129 0.95208 0.99426 1.21100 1.00250 0.94900 0.97631 1.21068 0.98553 0.99813 0.94415 0.92657 0.92523 0.93022 0.95480 0.90901 0.95798 0.91043 0.93058 0.93188 0.93742 0.93578 0.93494 0.92477 0.96993 0.96623 0.93150 0.86999 0.95595 0.91845 0.90863 0.85842 0.86278 0.86498 0.86444 0.86437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.98 37.16 0.33 -1.04 16 2 C -0.08 -0.83 2.24 -90.54 -0.20 -1.03 16 3 H 0.08 0.93 7.30 -51.93 -0.38 0.55 16 4 C 0.06 0.75 4.75 -3.83 -0.02 0.73 16 5 N -0.53 -7.74 3.85 -234.67 -0.90 -8.64 16 6 C 0.07 1.15 4.61 -3.83 -0.02 1.13 16 7 C -0.06 -1.16 0.53 -154.51 -0.08 -1.25 16 8 C -0.12 -2.32 7.45 37.15 0.28 -2.04 16 9 C -0.15 -2.71 7.38 37.16 0.27 -2.43 16 10 C 0.04 0.91 3.86 -27.89 -0.11 0.81 16 11 C -0.51 -13.87 7.78 -34.44 -0.27 -14.14 16 12 H 0.06 1.53 5.78 -52.48 -0.30 1.22 16 13 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 14 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 15 Si 0.89 21.73 29.54 -169.99 -5.02 16.70 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 C 0.03 0.45 2.97 -3.83 -0.01 0.44 16 20 C -0.11 -1.24 5.22 -26.65 -0.14 -1.38 16 21 C -0.05 -0.47 1.94 -91.64 -0.18 -0.65 16 22 H 0.07 0.75 7.88 -51.93 -0.41 0.34 16 23 C -0.06 -0.63 3.66 -104.62 -0.38 -1.01 16 24 C -0.11 -1.12 8.66 -39.58 -0.34 -1.46 16 25 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 26 C -0.13 -1.11 10.05 -39.58 -0.40 -1.51 16 27 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 28 C -0.12 -1.12 9.67 -39.58 -0.38 -1.51 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.54 7.31 -51.93 -0.38 0.16 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.92 8.12 -51.92 -0.42 0.50 16 34 H 0.02 0.41 7.91 -51.93 -0.41 0.00 16 35 H 0.07 1.31 7.89 -51.93 -0.41 0.90 16 36 H 0.05 1.05 6.62 -51.93 -0.34 0.71 16 37 H 0.05 0.83 4.79 -51.93 -0.25 0.58 16 38 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.89 8.07 -51.93 -0.42 0.48 16 40 H 0.05 0.74 4.28 -51.93 -0.22 0.52 16 41 H 0.06 1.11 7.07 -51.93 -0.37 0.74 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.02 0.42 8.12 -51.93 -0.42 0.00 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.11 1.64 3.18 -51.93 -0.17 1.48 16 46 H 0.03 0.35 7.75 -51.93 -0.40 -0.05 16 47 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.07 0.88 7.32 -51.93 -0.38 0.50 16 49 H 0.12 1.21 7.06 -52.49 -0.37 0.83 16 50 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 51 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 52 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 53 H 0.12 0.95 7.95 -52.49 -0.42 0.54 16 LS Contribution 389.02 15.07 5.86 5.86 Total: -1.00 -29.23 389.02 -11.27 -40.50 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -9.41 Total: -0.37 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: -2.54 Total: -27.80 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: -0.17 Total: -34.90 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.23 -11.27 -40.50 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093668356.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.576 kcal (2) G-P(sol) polarization free energy of solvation -29.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds