Wall clock time and date at job start Tue Mar 31 2020 10:38:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.51127 * 2 1 4 4 C 1.53037 * 109.50541 * 120.08718 * 2 1 3 5 5 N 1.46849 * 109.52679 * 179.15674 * 4 2 1 6 6 C 1.46894 * 111.00036 * 174.15598 * 5 4 2 7 7 C 1.53001 * 109.47170 * 178.16144 * 6 5 4 8 8 C 1.52993 * 109.47018 * 35.11073 * 7 6 5 9 9 C 1.53004 * 109.46937 * 275.11164 * 7 6 5 10 10 C 1.52997 * 109.47517 * 155.11167 * 7 6 5 11 11 C 1.50697 * 109.47625 * 179.97438 * 10 7 6 12 12 H 1.08004 * 119.99603 * 359.97438 * 11 10 7 13 13 C 1.37875 * 120.00426 * 179.97438 * 11 10 7 14 14 N 1.31519 * 119.99852 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 119.99986 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47420 * 60.00300 * 15 13 11 17 17 H 1.48507 * 109.46885 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47379 * 299.99779 * 15 13 11 19 19 C 1.46846 * 111.19612 * 298.25198 * 5 4 2 20 20 C 1.53045 * 109.52205 * 61.74220 * 19 5 4 21 21 C 1.53119 * 109.27690 * 300.82051 * 20 19 5 22 22 H 1.09003 * 109.57334 * 297.71917 * 21 20 19 23 23 C 1.50703 * 109.51840 * 177.55958 * 21 20 19 24 24 C 1.38234 * 120.00089 * 300.03724 * 23 21 20 25 25 C 1.38233 * 119.99712 * 179.78937 * 24 23 21 26 26 C 1.38235 * 120.00298 * 0.47170 * 25 24 23 27 27 C 1.38236 * 119.99749 * 359.75931 * 26 25 24 28 28 C 1.38231 * 120.00141 * 0.03028 * 27 26 25 29 29 H 1.09000 * 109.46528 * 299.92168 * 1 2 3 30 30 H 1.08991 * 109.47081 * 59.91585 * 1 2 3 31 31 H 1.08998 * 109.47075 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46612 * 59.13448 * 4 2 1 33 33 H 1.09010 * 109.45748 * 299.17004 * 4 2 1 34 34 H 1.09004 * 109.47276 * 58.15835 * 6 5 4 35 35 H 1.08997 * 109.47451 * 298.15905 * 6 5 4 36 36 H 1.08997 * 109.47431 * 180.02562 * 8 7 6 37 37 H 1.09005 * 109.47377 * 300.00390 * 8 7 6 38 38 H 1.09002 * 109.47378 * 60.00444 * 8 7 6 39 39 H 1.08997 * 109.46861 * 285.85455 * 9 7 6 40 40 H 1.08996 * 109.47209 * 45.85753 * 9 7 6 41 41 H 1.09003 * 109.46611 * 165.85797 * 9 7 6 42 42 H 1.09006 * 109.46985 * 59.99680 * 10 7 6 43 43 H 1.09006 * 109.47068 * 300.00608 * 10 7 6 44 44 H 0.96996 * 119.99556 * 179.97438 * 14 13 11 45 45 H 1.08995 * 109.46127 * 181.75693 * 19 5 4 46 46 H 1.08997 * 109.46585 * 301.72644 * 19 5 4 47 47 H 1.09000 * 109.50326 * 180.87586 * 20 19 5 48 48 H 1.08999 * 109.50031 * 60.76031 * 20 19 5 49 49 H 1.07996 * 119.99839 * 0.02562 * 24 23 21 50 50 H 1.07999 * 120.00096 * 180.25342 * 25 24 23 51 51 H 1.07997 * 120.00348 * 179.78983 * 26 25 24 52 52 H 1.07996 * 120.00187 * 179.97438 * 27 26 25 53 53 H 1.07998 * 120.00307 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0410 -0.7232 1.2482 5 7 3.5093 -0.7411 1.2385 6 6 4.0372 -1.3045 2.4882 7 6 5.5651 -1.3489 2.4222 8 6 6.0776 -0.1347 1.6454 9 6 6.0079 -2.6312 1.7146 10 6 6.1378 -1.3256 3.8408 11 6 7.6427 -1.3700 3.7759 12 1 8.1409 -1.4113 2.8185 13 6 8.3836 -1.3581 4.9386 14 7 7.7769 -1.3083 6.1044 15 14 10.2491 -1.4124 4.8580 16 1 10.7465 -0.2341 4.1035 17 1 10.8049 -1.3886 6.2349 18 1 10.6788 -2.6571 4.1716 19 6 4.0237 -1.4718 0.0732 20 6 3.5719 -0.7711 -1.2102 21 6 2.0420 -0.7237 -1.2485 22 1 1.6456 -1.7389 -1.2694 23 6 1.5919 0.0181 -2.4807 24 6 1.9716 1.3333 -2.6729 25 6 1.5624 2.0124 -3.8053 26 6 0.7654 1.3793 -4.7407 27 6 0.3818 0.0656 -4.5462 28 6 0.7946 -0.6148 -3.4159 29 1 -0.3632 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8892 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6653 -1.7463 1.2545 33 1 1.6900 -0.2021 2.1390 34 1 3.6498 -2.3143 2.6237 35 1 3.7278 -0.6811 3.3270 36 1 7.1661 -0.1665 1.5979 37 1 5.6696 -0.1512 0.6347 38 1 5.7622 0.7788 2.1495 39 1 5.8682 -3.4814 2.3821 40 1 5.4105 -2.7741 0.8142 41 1 7.0606 -2.5514 1.4433 42 1 5.7727 -2.1908 4.3943 43 1 5.8223 -0.4121 4.3450 44 1 8.2982 -1.3003 6.9224 45 1 5.1128 -1.4945 0.1106 46 1 3.6388 -2.4915 0.0850 47 1 3.9408 -1.3224 -2.0750 48 1 3.9681 0.2442 -1.2291 49 1 2.5911 1.8291 -1.9403 50 1 1.8623 3.0386 -3.9575 51 1 0.4429 1.9109 -5.6238 52 1 -0.2411 -0.4289 -5.2767 53 1 0.4946 -1.6411 -3.2637 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093668356.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:39 Heat of formation + Delta-G solvation = 5.207480 kcal Electronic energy + Delta-G solvation = -27320.774163 eV Core-core repulsion = 23963.057924 eV Total energy + Delta-G solvation = -3357.716239 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.29926 -39.92008 -37.93367 -35.24272 -33.94239 -33.16737 -31.71656 -31.02881 -29.26900 -27.93189 -27.58436 -27.11389 -25.23361 -23.92732 -23.43878 -22.61626 -21.91392 -20.26332 -19.51762 -18.30545 -17.79272 -16.91637 -16.47503 -16.14053 -16.10158 -15.67434 -15.50258 -15.28781 -15.06628 -14.59590 -14.52462 -14.43157 -14.12259 -14.02085 -13.76137 -13.47254 -13.31158 -13.17908 -12.92190 -12.76759 -12.69878 -12.61310 -12.37606 -12.32703 -12.20196 -12.03848 -11.91939 -11.86059 -11.75770 -11.46157 -11.40479 -11.26838 -11.09702 -10.80754 -10.49228 -10.39087 -9.73191 -9.46116 -9.13280 -8.13177 -6.20272 0.54570 0.58747 1.40477 1.42926 1.50116 2.43957 2.96207 3.02268 3.20454 3.70685 3.75743 3.94767 4.12370 4.16717 4.20014 4.23381 4.26911 4.36030 4.38917 4.40529 4.47871 4.57310 4.65047 4.66193 4.71594 4.75392 4.80697 4.83989 4.89024 4.90352 4.94802 5.00326 5.03194 5.08389 5.16253 5.18681 5.25189 5.26783 5.28998 5.31869 5.36962 5.50207 5.51891 5.57144 5.58998 5.67592 5.70054 5.71668 5.85269 5.90009 5.92823 6.21292 6.23059 6.31260 6.39494 6.94598 7.46893 8.98993 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.026488 B = 0.002674 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.814396 B =10467.462268 C =10899.417357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.070 4.070 3 H 0.071 0.929 4 C 0.059 3.941 5 N -0.533 5.533 6 C 0.077 3.923 7 C -0.054 4.054 8 C -0.111 4.111 9 C -0.139 4.139 10 C 0.043 3.957 11 C -0.513 4.513 12 H 0.065 0.935 13 C -0.005 4.005 14 N -0.938 5.938 15 Si 0.956 3.044 16 H -0.268 1.268 17 H -0.288 1.288 18 H -0.268 1.268 19 C 0.033 3.967 20 C -0.102 4.102 21 C -0.038 4.038 22 H 0.076 0.924 23 C -0.071 4.071 24 C -0.126 4.126 25 C -0.128 4.128 26 C -0.135 4.135 27 C -0.126 4.126 28 C -0.128 4.128 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.031 0.969 33 H 0.068 0.932 34 H 0.024 0.976 35 H 0.055 0.945 36 H 0.034 0.966 37 H 0.079 0.921 38 H 0.029 0.971 39 H 0.031 0.969 40 H 0.081 0.919 41 H 0.047 0.953 42 H -0.018 1.018 43 H -0.017 1.017 44 H 0.259 0.741 45 H 0.101 0.899 46 H 0.031 0.969 47 H 0.074 0.926 48 H 0.067 0.933 49 H 0.119 0.881 50 H 0.132 0.868 51 H 0.137 0.863 52 H 0.137 0.863 53 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.732 2.617 -22.108 27.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.089 4.089 3 H 0.089 0.911 4 C -0.068 4.068 5 N -0.257 5.257 6 C -0.051 4.051 7 C -0.054 4.054 8 C -0.168 4.168 9 C -0.196 4.196 10 C 0.005 3.995 11 C -0.551 4.551 12 H 0.083 0.917 13 C -0.202 4.202 14 N -0.580 5.580 15 Si 0.781 3.219 16 H -0.193 1.193 17 H -0.214 1.214 18 H -0.193 1.193 19 C -0.094 4.094 20 C -0.140 4.140 21 C -0.057 4.057 22 H 0.094 0.906 23 C -0.071 4.071 24 C -0.144 4.144 25 C -0.146 4.146 26 C -0.153 4.153 27 C -0.143 4.143 28 C -0.146 4.146 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.073 0.927 36 H 0.053 0.947 37 H 0.097 0.903 38 H 0.048 0.952 39 H 0.050 0.950 40 H 0.099 0.901 41 H 0.066 0.934 42 H 0.001 0.999 43 H 0.001 0.999 44 H 0.068 0.932 45 H 0.118 0.882 46 H 0.049 0.951 47 H 0.093 0.907 48 H 0.086 0.914 49 H 0.137 0.863 50 H 0.150 0.850 51 H 0.155 0.845 52 H 0.155 0.845 53 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.539 3.099 -21.960 27.666 hybrid contribution 0.789 -0.845 1.079 1.582 sum -15.750 2.254 -20.881 26.252 Atomic orbital electron populations 1.21728 0.94011 1.01993 1.01868 1.21102 0.95742 0.99495 0.92523 0.91060 1.22170 0.87057 0.98854 0.98766 1.61998 1.07792 1.54071 1.01835 1.22016 0.94836 0.96577 0.91687 1.20476 0.92703 0.96040 0.96189 1.21728 0.99096 0.96039 0.99899 1.22202 1.01267 0.96212 0.99880 1.19025 0.94955 0.93819 0.91686 1.21579 0.92727 1.48436 0.92390 0.91721 1.25928 1.03337 0.95560 0.95355 1.70107 1.37173 1.52715 0.97957 0.85637 0.80205 0.79079 0.76964 1.19334 1.21361 1.19263 1.22795 1.01935 0.94618 0.90080 1.21648 0.94527 1.01534 0.96300 1.20224 0.95402 0.98473 0.91575 0.90606 1.19838 0.97244 0.94321 0.95741 1.21146 1.00530 0.94578 0.98125 1.21386 0.98219 1.00635 0.94323 1.21409 0.98568 0.95416 0.99891 1.21397 1.00136 0.95042 0.97762 1.21262 0.98415 1.00449 0.94513 0.92436 0.92384 0.92427 0.95085 0.91319 0.95733 0.92680 0.94682 0.90277 0.95157 0.94956 0.90101 0.93394 0.99926 0.99852 0.93193 0.88178 0.95129 0.90707 0.91409 0.86311 0.84989 0.84537 0.84472 0.85378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 8.98 71.98 0.65 -1.72 16 2 C -0.07 -1.40 2.24 -10.74 -0.02 -1.42 16 3 H 0.07 1.58 7.30 -2.39 -0.02 1.56 16 4 C 0.06 1.43 4.75 86.33 0.41 1.84 16 5 N -0.53 -15.16 3.85 -896.36 -3.45 -18.61 16 6 C 0.08 2.69 4.61 86.30 0.40 3.09 16 7 C -0.05 -2.16 0.53 -52.18 -0.03 -2.19 16 8 C -0.11 -4.22 7.45 71.98 0.54 -3.69 16 9 C -0.14 -5.10 7.38 71.98 0.53 -4.57 16 10 C 0.04 2.25 3.86 29.85 0.12 2.37 16 11 C -0.51 -28.76 7.78 25.60 0.20 -28.56 16 12 H 0.06 3.47 5.78 -2.91 -0.02 3.45 16 13 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 14 N -0.94 -58.07 13.29 21.45 0.28 -57.79 16 15 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 16 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 17 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 19 C 0.03 0.82 2.97 86.33 0.26 1.07 16 20 C -0.10 -2.13 5.22 30.65 0.16 -1.97 16 21 C -0.04 -0.72 1.94 -11.46 -0.02 -0.74 16 22 H 0.08 1.38 7.88 -2.39 -0.02 1.36 16 23 C -0.07 -1.29 3.66 -19.86 -0.07 -1.36 16 24 C -0.13 -2.31 8.66 22.27 0.19 -2.12 16 25 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 26 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 27 C -0.13 -1.82 10.05 22.27 0.22 -1.59 16 28 C -0.13 -2.08 9.67 22.27 0.22 -1.86 16 29 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 1.00 7.31 -2.39 -0.02 0.98 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.07 1.71 8.12 -2.38 -0.02 1.69 16 34 H 0.02 0.85 7.91 -2.39 -0.02 0.83 16 35 H 0.05 2.10 7.89 -2.39 -0.02 2.08 16 36 H 0.03 1.43 6.62 -2.39 -0.02 1.41 16 37 H 0.08 2.55 4.79 -2.38 -0.01 2.53 16 38 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.03 1.25 8.07 -2.39 -0.02 1.23 16 40 H 0.08 2.41 4.28 -2.39 -0.01 2.40 16 41 H 0.05 1.83 7.07 -2.39 -0.02 1.81 16 42 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 43 H -0.02 -0.99 8.12 -2.38 -0.02 -1.01 16 44 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 45 H 0.10 2.74 3.18 -2.39 -0.01 2.73 16 46 H 0.03 0.76 7.75 -2.39 -0.02 0.74 16 47 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.07 1.50 7.32 -2.39 -0.02 1.49 16 49 H 0.12 2.22 7.06 -2.91 -0.02 2.20 16 50 H 0.13 1.69 8.06 -2.91 -0.02 1.66 16 51 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 52 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 53 H 0.13 1.73 7.95 -2.91 -0.02 1.71 16 Total: -1.00 -63.99 389.02 4.37 -59.62 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: 0.86 Total: 16.67 kcal Atomic # 6 Polarization: -51.47 SS G_CDS: 4.65 Total: -46.83 kcal Atomic # 7 Polarization: -73.24 SS G_CDS: -3.16 Total: -76.40 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -63.99 4.37 -59.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093668356.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.828 kcal (2) G-P(sol) polarization free energy of solvation -63.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds