Wall clock time and date at job start Tue Mar 31 2020 10:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09002 * 109.50245 * 2 1 4 4 C 1.53032 * 109.50639 * 120.08057 * 2 1 3 5 5 N 1.46848 * 109.52267 * 60.76214 * 4 2 1 6 6 C 1.46905 * 110.99943 * 185.83940 * 5 4 2 7 7 C 1.52999 * 109.46932 * 87.27661 * 6 5 4 8 8 C 1.53002 * 109.47009 * 54.66150 * 7 6 5 9 9 C 1.52994 * 109.47344 * 294.66070 * 7 6 5 10 10 C 1.52999 * 109.46981 * 174.66150 * 7 6 5 11 11 C 1.50696 * 109.47059 * 180.02562 * 10 7 6 12 12 H 1.08005 * 120.00261 * 359.97438 * 11 10 7 13 13 C 1.37878 * 120.00211 * 180.02562 * 11 10 7 14 14 N 1.31518 * 119.99619 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00344 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.46840 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47079 * 240.00253 * 15 13 11 18 18 H 1.48497 * 109.46927 * 120.00087 * 15 13 11 19 19 C 1.46850 * 111.19799 * 61.74678 * 5 4 2 20 20 C 1.53039 * 109.51795 * 298.25592 * 19 5 4 21 21 C 1.53115 * 109.50594 * 239.88721 * 2 1 3 22 22 H 1.08999 * 109.52980 * 177.80855 * 21 2 1 23 23 C 1.50702 * 109.52660 * 57.61302 * 21 2 1 24 24 C 1.38234 * 120.00086 * 284.46414 * 23 21 2 25 25 C 1.38233 * 119.99750 * 179.78472 * 24 23 21 26 26 C 1.38226 * 120.00253 * 0.46055 * 25 24 23 27 27 C 1.38235 * 119.99847 * 359.76570 * 26 25 24 28 28 C 1.38230 * 120.00308 * 0.02562 * 27 26 25 29 29 H 1.09009 * 109.47186 * 292.95769 * 1 2 3 30 30 H 1.09001 * 109.47703 * 52.96101 * 1 2 3 31 31 H 1.09005 * 109.47285 * 172.95948 * 1 2 3 32 32 H 1.09004 * 109.46530 * 300.74392 * 4 2 1 33 33 H 1.09002 * 109.45707 * 180.77453 * 4 2 1 34 34 H 1.09000 * 109.47393 * 327.27811 * 6 5 4 35 35 H 1.08997 * 109.46694 * 207.27554 * 6 5 4 36 36 H 1.09001 * 109.46984 * 185.20825 * 8 7 6 37 37 H 1.08991 * 109.47495 * 305.21204 * 8 7 6 38 38 H 1.08998 * 109.46768 * 65.21571 * 8 7 6 39 39 H 1.08999 * 109.47215 * 312.51973 * 9 7 6 40 40 H 1.09003 * 109.46825 * 72.51133 * 9 7 6 41 41 H 1.08996 * 109.47552 * 192.51298 * 9 7 6 42 42 H 1.09002 * 109.47213 * 60.00023 * 10 7 6 43 43 H 1.08996 * 109.47417 * 299.99968 * 10 7 6 44 44 H 0.96995 * 119.99970 * 359.97438 * 14 13 11 45 45 H 1.09002 * 109.46287 * 58.26842 * 19 5 4 46 46 H 1.08998 * 109.46332 * 178.24330 * 19 5 4 47 47 H 1.09001 * 109.50476 * 299.23650 * 20 19 5 48 48 H 1.08997 * 109.53636 * 179.14097 * 20 19 5 49 49 H 1.08003 * 119.99668 * 359.97438 * 24 23 21 50 50 H 1.08009 * 119.99414 * 180.24903 * 25 24 23 51 51 H 1.08002 * 119.99936 * 179.79393 * 26 25 24 52 52 H 1.08003 * 119.99954 * 180.02562 * 27 26 25 53 53 H 1.08000 * 120.00444 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7230 1.2482 5 7 1.5675 -2.1131 1.2385 6 6 1.9224 -2.7988 2.4883 7 6 0.8279 -2.5588 3.5301 8 6 -0.5249 -2.9844 2.9558 9 6 0.7841 -1.0727 3.8908 10 6 1.1300 -3.3796 4.7855 11 6 0.0517 -3.1438 5.8114 12 1 -0.7671 -2.4750 5.5903 13 6 0.1108 -3.7809 7.0327 14 7 1.1086 -4.5941 7.3024 15 14 -1.2255 -3.4880 8.3047 16 1 -2.2275 -2.5371 7.7599 17 1 -0.6208 -2.9192 9.5359 18 1 -1.8908 -4.7754 8.6291 19 6 2.0847 -2.8420 0.0732 20 6 1.5749 -2.1821 -1.2101 21 6 2.0412 -0.7241 -1.2485 22 1 3.1304 -0.6905 -1.2688 23 6 1.4922 -0.0522 -2.4807 24 6 0.1732 -0.2478 -2.8451 25 6 -0.3314 0.3720 -3.9729 26 6 0.4854 1.1799 -4.7416 27 6 1.8057 1.3717 -4.3798 28 6 2.3093 0.7554 -3.2496 29 1 -0.3634 0.4009 0.9463 30 1 -0.3634 0.6190 -0.8203 31 1 -0.3634 -1.0200 -0.1260 32 1 1.6670 -0.2182 2.1390 33 1 3.1308 -0.7105 1.2544 34 1 2.8698 -2.4089 2.8603 35 1 2.0179 -3.8684 2.3013 36 1 -1.3157 -2.7284 3.6610 37 1 -0.6981 -2.4670 2.0123 38 1 -0.5248 -4.0609 2.7853 39 1 1.7953 -0.7165 4.0874 40 1 0.3556 -0.5100 3.0613 41 1 0.1701 -0.9326 4.7804 42 1 2.0938 -3.0765 5.1946 43 1 1.1612 -4.4384 4.5286 44 1 1.8026 -4.7459 6.6421 45 1 3.1744 -2.8195 0.0851 46 1 1.7424 -3.8761 0.1105 47 1 0.4856 -2.2165 -1.2291 48 1 1.9709 -2.7137 -2.0753 49 1 -0.4638 -0.8825 -2.2469 50 1 -1.3631 0.2224 -4.2553 51 1 0.0919 1.6615 -5.6246 52 1 2.4438 2.0033 -4.9801 53 1 3.3409 0.9049 -2.9671 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245797162.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:43 Heat of formation + Delta-G solvation = 4.654715 kcal Electronic energy + Delta-G solvation = -27542.348643 eV Core-core repulsion = 24184.608434 eV Total energy + Delta-G solvation = -3357.740209 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.48097 -38.77302 -36.68328 -34.00871 -32.31042 -31.83794 -31.16153 -29.93977 -27.13643 -26.49643 -26.34881 -25.96843 -23.62797 -23.18891 -22.31612 -21.92124 -21.14795 -18.65053 -18.14279 -17.01320 -16.35993 -15.99651 -15.43170 -15.07654 -14.85122 -14.81649 -14.51858 -13.81968 -13.65030 -13.56325 -13.38093 -13.30172 -13.10662 -12.71195 -12.55671 -12.49866 -11.95102 -11.89472 -11.67048 -11.45449 -11.40818 -11.20026 -11.06126 -10.95026 -10.82141 -10.79566 -10.62869 -10.54254 -10.25943 -10.17851 -10.08272 -9.84028 -9.67594 -9.13297 -9.04656 -8.78306 -8.38509 -8.23888 -7.90884 -6.26119 -3.93305 1.19311 1.22959 3.47646 3.51492 3.60862 3.64356 4.13766 4.48194 4.57441 4.61108 4.81207 4.82879 4.85856 4.96291 5.14130 5.19927 5.29098 5.33681 5.34407 5.48480 5.54336 5.57246 5.58236 5.62207 5.78309 5.81424 5.83313 5.85796 5.91216 5.96102 5.97915 6.03248 6.14015 6.17514 6.20806 6.28667 6.31878 6.32004 6.35026 6.45877 6.53985 6.59837 6.69442 6.78163 6.84099 6.85423 7.20080 7.21445 7.27268 7.39944 7.45461 7.51213 7.67048 8.34891 8.57927 8.99419 9.77102 11.13884 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.031181 B = 0.002672 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.759875 B =10477.539396 C =10769.314186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.075 4.075 3 H 0.067 0.933 4 C 0.045 3.955 5 N -0.524 5.524 6 C 0.065 3.935 7 C -0.042 4.042 8 C -0.112 4.112 9 C -0.131 4.131 10 C 0.019 3.981 11 C -0.584 4.584 12 H 0.054 0.946 13 C 0.010 3.990 14 N -0.920 5.920 15 Si 1.070 2.930 16 H -0.290 1.290 17 H -0.289 1.289 18 H -0.289 1.289 19 C 0.055 3.945 20 C -0.109 4.109 21 C -0.046 4.046 22 H 0.071 0.929 23 C -0.067 4.067 24 C -0.111 4.111 25 C -0.122 4.122 26 C -0.129 4.129 27 C -0.122 4.122 28 C -0.120 4.120 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.096 0.904 33 H 0.024 0.976 34 H 0.031 0.969 35 H 0.061 0.939 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.034 0.966 39 H 0.033 0.967 40 H 0.045 0.955 41 H 0.065 0.935 42 H 0.001 0.999 43 H 0.004 0.996 44 H 0.268 0.732 45 H 0.026 0.974 46 H 0.073 0.927 47 H 0.077 0.923 48 H 0.062 0.938 49 H 0.128 0.872 50 H 0.119 0.881 51 H 0.117 0.883 52 H 0.118 0.882 53 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.269 10.542 -23.421 25.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.094 4.094 3 H 0.086 0.914 4 C -0.083 4.083 5 N -0.248 5.248 6 C -0.063 4.063 7 C -0.043 4.043 8 C -0.170 4.170 9 C -0.188 4.188 10 C -0.019 4.019 11 C -0.622 4.622 12 H 0.072 0.928 13 C -0.193 4.193 14 N -0.557 5.557 15 Si 0.899 3.101 16 H -0.216 1.216 17 H -0.216 1.216 18 H -0.215 1.215 19 C -0.073 4.073 20 C -0.146 4.146 21 C -0.065 4.065 22 H 0.090 0.910 23 C -0.067 4.067 24 C -0.128 4.128 25 C -0.140 4.140 26 C -0.147 4.147 27 C -0.140 4.140 28 C -0.138 4.138 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.042 0.958 34 H 0.049 0.951 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.053 0.947 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.020 0.980 43 H 0.022 0.978 44 H 0.078 0.922 45 H 0.044 0.956 46 H 0.092 0.908 47 H 0.096 0.904 48 H 0.081 0.919 49 H 0.145 0.855 50 H 0.137 0.863 51 H 0.135 0.865 52 H 0.136 0.864 53 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.267 10.141 -21.932 24.164 hybrid contribution 1.597 0.379 -1.499 2.223 sum 1.864 10.520 -23.431 25.752 Atomic orbital electron populations 1.21939 0.94391 1.02502 1.01045 1.21113 0.97184 0.98083 0.93018 0.91441 1.22556 0.96620 0.90077 0.99017 1.61887 1.59431 1.01489 1.02030 1.22330 0.97243 0.97505 0.89182 1.20381 0.94031 0.95713 0.94165 1.21556 0.96729 0.99398 0.99299 1.21965 1.00161 0.95838 1.00866 1.19276 0.96652 0.93974 0.91973 1.22073 1.09683 1.29599 1.00854 0.92822 1.25775 1.00663 0.94021 0.98797 1.70715 1.11634 1.35183 1.38171 0.83531 0.75070 0.75971 0.75508 1.21555 1.21574 1.21545 1.22112 0.96688 0.97892 0.90634 1.21715 1.02146 0.94008 0.96759 1.20267 0.99440 0.94930 0.91834 0.91030 1.19885 0.93957 0.96971 0.95902 1.21221 0.95252 0.99807 0.96551 1.21166 0.99736 0.97691 0.95435 1.21107 0.94195 0.99440 0.99956 1.21095 0.95712 1.00007 0.97197 1.21062 0.99615 0.97797 0.95363 0.92825 0.93228 0.91181 0.88569 0.95799 0.95081 0.91996 0.93104 0.93206 0.94675 0.94790 0.93652 0.91581 0.98043 0.97823 0.92190 0.95603 0.90815 0.90442 0.91940 0.85464 0.86269 0.86485 0.86428 0.86430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 7.37 37.15 0.27 -1.34 16 2 C -0.08 -0.84 2.76 -90.55 -0.25 -1.09 16 3 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 4 C 0.04 0.59 4.35 -3.84 -0.02 0.57 16 5 N -0.52 -7.36 2.81 -234.66 -0.66 -8.02 16 6 C 0.06 1.10 4.24 -3.82 -0.02 1.09 16 7 C -0.04 -0.84 0.61 -154.51 -0.09 -0.93 16 8 C -0.11 -2.19 7.96 37.16 0.30 -1.89 16 9 C -0.13 -2.49 6.87 37.15 0.26 -2.23 16 10 C 0.02 0.47 3.35 -27.89 -0.09 0.38 16 11 C -0.58 -16.16 7.53 -34.44 -0.26 -16.42 16 12 H 0.05 1.47 5.77 -52.48 -0.30 1.17 16 13 C 0.01 0.30 5.46 -17.82 -0.10 0.20 16 14 N -0.92 -28.36 13.65 55.43 0.76 -27.61 16 15 Si 1.07 25.65 29.90 -169.99 -5.08 20.57 16 16 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 C 0.05 0.67 5.35 -3.83 -0.02 0.65 16 20 C -0.11 -1.14 4.69 -26.65 -0.12 -1.26 16 21 C -0.05 -0.47 2.30 -91.65 -0.21 -0.68 16 22 H 0.07 0.73 7.96 -51.93 -0.41 0.31 16 23 C -0.07 -0.67 4.62 -104.62 -0.48 -1.15 16 24 C -0.11 -1.07 6.90 -39.58 -0.27 -1.34 16 25 C -0.12 -1.09 10.05 -39.59 -0.40 -1.49 16 26 C -0.13 -1.09 10.05 -39.59 -0.40 -1.49 16 27 C -0.12 -1.05 10.05 -39.59 -0.40 -1.45 16 28 C -0.12 -1.13 9.67 -39.58 -0.38 -1.51 16 29 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 30 H 0.05 0.53 5.98 -51.93 -0.31 0.22 16 31 H 0.07 0.84 5.52 -51.93 -0.29 0.56 16 32 H 0.10 1.36 4.22 -51.93 -0.22 1.15 16 33 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.03 0.54 7.77 -51.93 -0.40 0.14 16 35 H 0.06 1.08 7.61 -51.93 -0.40 0.68 16 36 H 0.05 1.07 6.80 -51.93 -0.35 0.71 16 37 H 0.05 0.87 7.29 -51.93 -0.38 0.49 16 38 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.03 0.62 7.71 -51.93 -0.40 0.22 16 40 H 0.04 0.76 6.28 -51.93 -0.33 0.43 16 41 H 0.07 1.40 6.31 -51.93 -0.33 1.08 16 42 H 0.00 0.04 8.01 -51.93 -0.42 -0.38 16 43 H 0.00 0.09 8.01 -51.93 -0.42 -0.32 16 44 H 0.27 8.24 7.22 -40.82 -0.29 7.95 16 45 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.07 0.91 7.90 -51.93 -0.41 0.50 16 47 H 0.08 0.84 4.99 -51.93 -0.26 0.58 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.13 1.20 5.33 -52.48 -0.28 0.92 16 50 H 0.12 0.85 8.06 -52.48 -0.42 0.43 16 51 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 52 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 53 H 0.12 0.95 8.01 -52.49 -0.42 0.53 16 LS Contribution 383.56 15.07 5.78 5.78 Total: -1.00 -29.75 383.56 -11.11 -40.86 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -9.21 Total: -0.20 kcal Atomic # 6 Polarization: -28.70 SS G_CDS: -2.69 Total: -31.39 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.10 Total: -35.62 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -5.08 Total: 20.57 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.75 -11.11 -40.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245797162.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.519 kcal (2) G-P(sol) polarization free energy of solvation -29.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds