Wall clock time and date at job start Tue Mar 31 2020 10:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09002 * 109.50245 * 2 1 4 4 C 1.53032 * 109.50639 * 120.08057 * 2 1 3 5 5 N 1.46848 * 109.52267 * 60.76214 * 4 2 1 6 6 C 1.46905 * 110.99943 * 185.83940 * 5 4 2 7 7 C 1.52999 * 109.46932 * 87.27661 * 6 5 4 8 8 C 1.53002 * 109.47009 * 54.66150 * 7 6 5 9 9 C 1.52994 * 109.47344 * 294.66070 * 7 6 5 10 10 C 1.52999 * 109.46981 * 174.66150 * 7 6 5 11 11 C 1.50696 * 109.47059 * 180.02562 * 10 7 6 12 12 H 1.08005 * 120.00261 * 359.97438 * 11 10 7 13 13 C 1.37878 * 120.00211 * 180.02562 * 11 10 7 14 14 N 1.31518 * 119.99619 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 120.00344 * 179.97438 * 13 11 10 16 16 H 1.48494 * 109.46840 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.47079 * 240.00253 * 15 13 11 18 18 H 1.48497 * 109.46927 * 120.00087 * 15 13 11 19 19 C 1.46850 * 111.19799 * 61.74678 * 5 4 2 20 20 C 1.53039 * 109.51795 * 298.25592 * 19 5 4 21 21 C 1.53115 * 109.50594 * 239.88721 * 2 1 3 22 22 H 1.08999 * 109.52980 * 177.80855 * 21 2 1 23 23 C 1.50702 * 109.52660 * 57.61302 * 21 2 1 24 24 C 1.38234 * 120.00086 * 284.46414 * 23 21 2 25 25 C 1.38233 * 119.99750 * 179.78472 * 24 23 21 26 26 C 1.38226 * 120.00253 * 0.46055 * 25 24 23 27 27 C 1.38235 * 119.99847 * 359.76570 * 26 25 24 28 28 C 1.38230 * 120.00308 * 0.02562 * 27 26 25 29 29 H 1.09009 * 109.47186 * 292.95769 * 1 2 3 30 30 H 1.09001 * 109.47703 * 52.96101 * 1 2 3 31 31 H 1.09005 * 109.47285 * 172.95948 * 1 2 3 32 32 H 1.09004 * 109.46530 * 300.74392 * 4 2 1 33 33 H 1.09002 * 109.45707 * 180.77453 * 4 2 1 34 34 H 1.09000 * 109.47393 * 327.27811 * 6 5 4 35 35 H 1.08997 * 109.46694 * 207.27554 * 6 5 4 36 36 H 1.09001 * 109.46984 * 185.20825 * 8 7 6 37 37 H 1.08991 * 109.47495 * 305.21204 * 8 7 6 38 38 H 1.08998 * 109.46768 * 65.21571 * 8 7 6 39 39 H 1.08999 * 109.47215 * 312.51973 * 9 7 6 40 40 H 1.09003 * 109.46825 * 72.51133 * 9 7 6 41 41 H 1.08996 * 109.47552 * 192.51298 * 9 7 6 42 42 H 1.09002 * 109.47213 * 60.00023 * 10 7 6 43 43 H 1.08996 * 109.47417 * 299.99968 * 10 7 6 44 44 H 0.96995 * 119.99970 * 359.97438 * 14 13 11 45 45 H 1.09002 * 109.46287 * 58.26842 * 19 5 4 46 46 H 1.08998 * 109.46332 * 178.24330 * 19 5 4 47 47 H 1.09001 * 109.50476 * 299.23650 * 20 19 5 48 48 H 1.08997 * 109.53636 * 179.14097 * 20 19 5 49 49 H 1.08003 * 119.99668 * 359.97438 * 24 23 21 50 50 H 1.08009 * 119.99414 * 180.24903 * 25 24 23 51 51 H 1.08002 * 119.99936 * 179.79393 * 26 25 24 52 52 H 1.08003 * 119.99954 * 180.02562 * 27 26 25 53 53 H 1.08000 * 120.00444 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7230 1.2482 5 7 1.5675 -2.1131 1.2385 6 6 1.9224 -2.7988 2.4883 7 6 0.8279 -2.5588 3.5301 8 6 -0.5249 -2.9844 2.9558 9 6 0.7841 -1.0727 3.8908 10 6 1.1300 -3.3796 4.7855 11 6 0.0517 -3.1438 5.8114 12 1 -0.7671 -2.4750 5.5903 13 6 0.1108 -3.7809 7.0327 14 7 1.1086 -4.5941 7.3024 15 14 -1.2255 -3.4880 8.3047 16 1 -2.2275 -2.5371 7.7599 17 1 -0.6208 -2.9192 9.5359 18 1 -1.8908 -4.7754 8.6291 19 6 2.0847 -2.8420 0.0732 20 6 1.5749 -2.1821 -1.2101 21 6 2.0412 -0.7241 -1.2485 22 1 3.1304 -0.6905 -1.2688 23 6 1.4922 -0.0522 -2.4807 24 6 0.1732 -0.2478 -2.8451 25 6 -0.3314 0.3720 -3.9729 26 6 0.4854 1.1799 -4.7416 27 6 1.8057 1.3717 -4.3798 28 6 2.3093 0.7554 -3.2496 29 1 -0.3634 0.4009 0.9463 30 1 -0.3634 0.6190 -0.8203 31 1 -0.3634 -1.0200 -0.1260 32 1 1.6670 -0.2182 2.1390 33 1 3.1308 -0.7105 1.2544 34 1 2.8698 -2.4089 2.8603 35 1 2.0179 -3.8684 2.3013 36 1 -1.3157 -2.7284 3.6610 37 1 -0.6981 -2.4670 2.0123 38 1 -0.5248 -4.0609 2.7853 39 1 1.7953 -0.7165 4.0874 40 1 0.3556 -0.5100 3.0613 41 1 0.1701 -0.9326 4.7804 42 1 2.0938 -3.0765 5.1946 43 1 1.1612 -4.4384 4.5286 44 1 1.8026 -4.7459 6.6421 45 1 3.1744 -2.8195 0.0851 46 1 1.7424 -3.8761 0.1105 47 1 0.4856 -2.2165 -1.2291 48 1 1.9709 -2.7137 -2.0753 49 1 -0.4638 -0.8825 -2.2469 50 1 -1.3631 0.2224 -4.2553 51 1 0.0919 1.6615 -5.6246 52 1 2.4438 2.0033 -4.9801 53 1 3.3409 0.9049 -2.9671 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245797162.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:42 Heat of formation + Delta-G solvation = -7.874258 kcal Electronic energy + Delta-G solvation = -27542.891940 eV Core-core repulsion = 24184.608434 eV Total energy + Delta-G solvation = -3358.283506 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.36903 -39.77623 -38.05789 -35.41902 -34.11639 -32.77433 -31.81818 -30.85020 -28.51558 -28.36967 -27.52628 -27.33724 -25.21920 -24.12728 -23.62796 -22.78162 -21.98073 -19.94894 -19.47996 -18.41211 -17.70787 -17.03762 -16.37214 -16.14547 -16.11999 -15.75371 -15.58341 -15.36968 -14.99191 -14.84655 -14.58138 -14.27942 -14.13769 -13.91595 -13.78778 -13.54587 -13.43389 -13.17256 -12.97620 -12.78153 -12.65621 -12.52953 -12.39555 -12.23907 -12.16385 -11.95523 -11.92133 -11.80558 -11.76515 -11.46494 -11.34641 -11.23747 -11.13266 -10.78583 -10.47937 -10.36875 -9.71546 -9.47770 -9.11774 -8.58606 -6.25916 0.52663 0.57489 1.52690 1.62078 1.77693 2.59465 2.94174 2.98125 3.24215 3.67629 3.77374 3.89534 4.07085 4.14995 4.17069 4.21735 4.27613 4.34039 4.36256 4.37122 4.38249 4.55924 4.62353 4.65239 4.67895 4.71306 4.79981 4.82875 4.87243 4.92199 4.94567 4.99287 5.02727 5.04040 5.11416 5.15556 5.19373 5.25010 5.28998 5.31107 5.35557 5.38800 5.42295 5.55815 5.62980 5.66351 5.69098 5.70463 5.76630 5.83937 6.10068 6.20018 6.22817 6.30399 6.31221 6.70134 7.53395 8.81523 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.031181 B = 0.002672 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.759875 B =10477.539396 C =10769.314186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.069 4.069 3 H 0.074 0.926 4 C 0.045 3.955 5 N -0.523 5.523 6 C 0.076 3.924 7 C -0.039 4.039 8 C -0.101 4.101 9 C -0.121 4.121 10 C 0.023 3.977 11 C -0.584 4.584 12 H 0.057 0.943 13 C -0.047 4.047 14 N -0.948 5.948 15 Si 1.117 2.883 16 H -0.268 1.268 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.054 3.946 20 C -0.101 4.101 21 C -0.039 4.039 22 H 0.073 0.927 23 C -0.077 4.077 24 C -0.121 4.121 25 C -0.131 4.131 26 C -0.134 4.134 27 C -0.128 4.128 28 C -0.131 4.131 29 H 0.043 0.957 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.024 0.976 34 H 0.024 0.976 35 H 0.055 0.945 36 H 0.032 0.968 37 H 0.074 0.926 38 H 0.024 0.976 39 H 0.035 0.965 40 H 0.071 0.929 41 H 0.040 0.960 42 H -0.023 1.023 43 H -0.021 1.021 44 H 0.253 0.747 45 H 0.028 0.972 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.073 0.927 49 H 0.127 0.873 50 H 0.134 0.866 51 H 0.137 0.863 52 H 0.136 0.864 53 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.423 12.141 -25.493 28.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.088 4.088 3 H 0.092 0.908 4 C -0.083 4.083 5 N -0.247 5.247 6 C -0.052 4.052 7 C -0.040 4.040 8 C -0.158 4.158 9 C -0.178 4.178 10 C -0.015 4.015 11 C -0.622 4.622 12 H 0.075 0.925 13 C -0.243 4.243 14 N -0.587 5.587 15 Si 0.939 3.061 16 H -0.193 1.193 17 H -0.209 1.209 18 H -0.209 1.209 19 C -0.074 4.074 20 C -0.138 4.138 21 C -0.058 4.058 22 H 0.092 0.908 23 C -0.077 4.077 24 C -0.138 4.138 25 C -0.149 4.149 26 C -0.152 4.152 27 C -0.146 4.146 28 C -0.149 4.149 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.103 0.897 33 H 0.043 0.957 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.051 0.949 37 H 0.093 0.907 38 H 0.043 0.957 39 H 0.054 0.946 40 H 0.090 0.910 41 H 0.059 0.941 42 H -0.005 1.005 43 H -0.003 1.003 44 H 0.062 0.938 45 H 0.046 0.954 46 H 0.089 0.911 47 H 0.094 0.906 48 H 0.092 0.908 49 H 0.145 0.855 50 H 0.152 0.848 51 H 0.154 0.846 52 H 0.154 0.846 53 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.575 11.752 -24.036 26.761 hybrid contribution 1.896 -0.099 -0.947 2.122 sum 1.321 11.654 -24.983 27.599 Atomic orbital electron populations 1.21877 0.94415 1.02167 1.00830 1.21056 0.97020 0.98229 0.92459 0.90789 1.22556 0.96702 0.89328 0.99665 1.61821 1.59668 1.01988 1.01188 1.22037 0.95650 0.97522 0.90007 1.20270 0.95436 0.95486 0.92762 1.21446 0.95553 0.98992 0.99848 1.21860 0.99987 0.95263 1.00666 1.19211 0.94853 0.93353 0.94076 1.22414 1.09918 1.28661 1.01241 0.92531 1.27295 1.01995 0.93469 1.01563 1.70857 1.12558 1.37220 1.38055 0.82934 0.73036 0.76623 0.73488 1.19273 1.20856 1.20866 1.22171 0.96866 0.97796 0.90526 1.21654 1.02029 0.94240 0.95921 1.20172 0.99499 0.94491 0.91621 0.90825 1.19858 0.94255 0.97627 0.95986 1.21298 0.95273 1.00199 0.97068 1.21420 1.00660 0.97565 0.95242 1.21416 0.94197 0.99101 1.00460 1.21383 0.96159 0.99955 0.97114 1.21264 1.00138 0.97813 0.95660 0.93753 0.92420 0.91807 0.89698 0.95743 0.95755 0.92626 0.94903 0.90718 0.95655 0.94588 0.91014 0.94117 1.00465 1.00271 0.93790 0.95388 0.91061 0.90554 0.90814 0.85526 0.84832 0.84559 0.84599 0.85536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 7.37 71.98 0.53 -2.29 16 2 C -0.07 -1.40 2.76 -10.75 -0.03 -1.42 16 3 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 4 C 0.05 1.11 4.35 86.32 0.38 1.48 16 5 N -0.52 -14.07 2.81 -896.34 -2.52 -16.59 16 6 C 0.08 2.59 4.24 86.30 0.37 2.96 16 7 C -0.04 -1.56 0.61 -52.18 -0.03 -1.59 16 8 C -0.10 -3.90 7.96 71.98 0.57 -3.32 16 9 C -0.12 -4.54 6.87 71.98 0.49 -4.04 16 10 C 0.02 1.17 3.35 29.85 0.10 1.27 16 11 C -0.58 -32.97 7.53 25.60 0.19 -32.77 16 12 H 0.06 3.12 5.77 -2.91 -0.02 3.10 16 13 C -0.05 -2.77 5.46 84.65 0.46 -2.31 16 14 N -0.95 -60.08 13.65 21.45 0.29 -59.79 16 15 Si 1.12 51.58 29.90 68.60 2.05 53.63 16 16 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 17 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 C 0.05 1.25 5.35 86.33 0.46 1.71 16 20 C -0.10 -1.91 4.69 30.65 0.14 -1.77 16 21 C -0.04 -0.72 2.30 -11.46 -0.03 -0.74 16 22 H 0.07 1.33 7.96 -2.39 -0.02 1.31 16 23 C -0.08 -1.37 4.62 -19.87 -0.09 -1.46 16 24 C -0.12 -2.09 6.90 22.27 0.15 -1.93 16 25 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 26 C -0.13 -1.92 10.05 22.27 0.22 -1.69 16 27 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 28 C -0.13 -2.15 9.67 22.27 0.22 -1.93 16 29 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 30 H 0.06 1.11 5.98 -2.39 -0.01 1.09 16 31 H 0.06 1.40 5.52 -2.38 -0.01 1.39 16 32 H 0.08 2.28 4.22 -2.38 -0.01 2.27 16 33 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.02 0.86 7.77 -2.39 -0.02 0.84 16 35 H 0.06 1.96 7.61 -2.39 -0.02 1.94 16 36 H 0.03 1.36 6.80 -2.39 -0.02 1.34 16 37 H 0.07 2.49 7.29 -2.39 -0.02 2.47 16 38 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.04 1.31 7.71 -2.39 -0.02 1.29 16 40 H 0.07 2.30 6.28 -2.39 -0.01 2.29 16 41 H 0.04 1.72 6.31 -2.39 -0.02 1.70 16 42 H -0.02 -1.30 8.01 -2.39 -0.02 -1.32 16 43 H -0.02 -1.19 8.01 -2.39 -0.02 -1.21 16 44 H 0.25 16.28 7.22 -92.71 -0.67 15.61 16 45 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.07 1.69 7.90 -2.39 -0.02 1.67 16 47 H 0.08 1.49 4.99 -2.39 -0.01 1.48 16 48 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 49 H 0.13 2.14 5.33 -2.91 -0.02 2.13 16 50 H 0.13 1.59 8.06 -2.91 -0.02 1.57 16 51 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 52 H 0.14 1.41 8.06 -2.91 -0.02 1.39 16 53 H 0.13 1.77 8.01 -2.91 -0.02 1.74 16 Total: -1.00 -64.80 383.56 5.35 -59.45 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.96 Total: 16.61 kcal Atomic # 6 Polarization: -57.88 SS G_CDS: 4.56 Total: -53.32 kcal Atomic # 7 Polarization: -74.15 SS G_CDS: -2.23 Total: -76.37 kcal Atomic # 14 Polarization: 51.58 SS G_CDS: 2.05 Total: 53.63 kcal Total: -64.80 5.35 -59.45 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245797162.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.576 kcal (2) G-P(sol) polarization free energy of solvation -64.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds