Wall clock time and date at job start Tue Mar 31 2020 10:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.50280 * 2 1 4 4 C 1.53041 * 109.53446 * 239.90435 * 2 1 3 5 5 N 1.46846 * 109.52272 * 180.85974 * 4 2 1 6 6 C 1.46905 * 110.99834 * 185.83758 * 5 4 2 7 7 C 1.53002 * 109.46866 * 182.49975 * 6 5 4 8 8 C 1.53000 * 109.47176 * 320.94142 * 7 6 5 9 9 C 1.52998 * 109.46734 * 80.94298 * 7 6 5 10 10 C 1.52996 * 109.47054 * 200.94235 * 7 6 5 11 11 C 1.50699 * 109.47455 * 179.97438 * 10 7 6 12 12 H 1.08003 * 119.99547 * 0.02562 * 11 10 7 13 13 C 1.37872 * 120.00476 * 179.97438 * 11 10 7 14 14 N 1.31508 * 120.00306 * 180.02562 * 13 11 10 15 15 Si 1.86809 * 119.99837 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.46899 * 89.99601 * 15 13 11 17 17 H 1.48496 * 109.47094 * 209.99884 * 15 13 11 18 18 H 1.48501 * 109.46730 * 329.99665 * 15 13 11 19 19 C 1.46850 * 111.19698 * 61.74415 * 5 4 2 20 20 C 1.53042 * 109.52088 * 298.25486 * 19 5 4 21 21 C 1.53118 * 109.50337 * 120.08331 * 2 1 3 22 22 H 1.09002 * 109.52462 * 57.66462 * 21 2 1 23 23 C 1.50699 * 109.52053 * 297.53989 * 21 2 1 24 24 C 1.38234 * 120.00123 * 120.00039 * 23 21 2 25 25 C 1.38241 * 119.99715 * 179.72111 * 24 23 21 26 26 C 1.38237 * 120.00174 * 0.27970 * 25 24 23 27 27 C 1.38236 * 119.99682 * 359.95642 * 26 25 24 28 28 C 1.38231 * 120.00601 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.47217 * 299.92209 * 1 2 3 30 30 H 1.09006 * 109.46962 * 59.91762 * 1 2 3 31 31 H 1.08995 * 109.47269 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46113 * 300.88093 * 4 2 1 33 33 H 1.09005 * 109.46513 * 60.85439 * 4 2 1 34 34 H 1.09001 * 109.47010 * 302.50222 * 6 5 4 35 35 H 1.08999 * 109.46650 * 62.50074 * 6 5 4 36 36 H 1.09000 * 109.46906 * 60.00493 * 8 7 6 37 37 H 1.09000 * 109.47070 * 179.97438 * 8 7 6 38 38 H 1.08993 * 109.47012 * 300.00476 * 8 7 6 39 39 H 1.09001 * 109.47106 * 85.67838 * 9 7 6 40 40 H 1.09004 * 109.46483 * 205.66925 * 9 7 6 41 41 H 1.08994 * 109.47814 * 325.67240 * 9 7 6 42 42 H 1.09003 * 109.47030 * 300.00119 * 10 7 6 43 43 H 1.08998 * 109.47256 * 59.99976 * 10 7 6 44 44 H 0.97002 * 120.00058 * 180.02562 * 14 13 11 45 45 H 1.09002 * 109.46404 * 58.26921 * 19 5 4 46 46 H 1.09000 * 109.45953 * 178.25268 * 19 5 4 47 47 H 1.09002 * 109.50245 * 299.23835 * 20 19 5 48 48 H 1.09002 * 109.49852 * 179.11852 * 20 19 5 49 49 H 1.07993 * 120.00245 * 0.02562 * 24 23 21 50 50 H 1.07995 * 119.99829 * 180.25564 * 25 24 23 51 51 H 1.07996 * 119.99526 * 179.97438 * 26 25 24 52 52 H 1.08001 * 119.99615 * 179.97438 * 27 26 25 53 53 H 1.07995 * 120.00287 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0417 -0.7232 -1.2479 5 7 3.5101 -0.7411 -1.2373 6 6 4.0387 -1.3047 -2.4866 7 6 5.5658 -1.3644 -2.4131 8 6 6.0922 -0.1089 -1.7149 9 6 5.9902 -2.6036 -1.6226 10 6 6.1419 -1.4402 -3.8285 11 6 7.6460 -1.4984 -3.7562 12 1 8.1415 -1.4832 -2.7966 13 6 8.3896 -1.5720 -4.9149 14 7 9.7022 -1.6232 -4.8518 15 14 7.5326 -1.5990 -6.5746 16 1 7.3625 -0.2082 -7.0665 17 1 8.3532 -2.3697 -7.5429 18 1 6.2007 -2.2405 -6.4334 19 6 4.0238 -1.4717 -0.0716 20 6 3.5712 -0.7707 1.2114 21 6 2.0412 -0.7235 1.2489 22 1 1.6449 -1.7387 1.2697 23 6 1.5903 0.0185 2.4806 24 6 0.7925 -0.6144 3.4154 25 6 0.3836 0.0645 4.5481 26 6 0.7678 1.3780 4.7432 27 6 1.5616 2.0123 3.8060 28 6 1.9708 1.3335 2.6735 29 1 -0.3634 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6660 -1.7465 -1.2543 33 1 1.6915 -0.2022 -2.1390 34 1 3.6421 -2.3101 -2.6281 35 1 3.7396 -0.6749 -3.3244 36 1 5.6819 -0.0549 -0.7065 37 1 7.1801 -0.1516 -1.6621 38 1 5.7898 0.7739 -2.2780 39 1 6.0370 -3.4629 -2.2916 40 1 6.9719 -2.4337 -1.1803 41 1 5.2644 -2.7971 -0.8328 42 1 5.7668 -2.3346 -4.3259 43 1 5.8395 -0.5574 -4.3917 44 1 10.2253 -1.6747 -5.6670 45 1 3.6388 -2.4914 -0.0834 46 1 5.1129 -1.4941 -0.1082 47 1 3.9673 0.2446 1.2305 48 1 3.9396 -1.3221 2.0766 49 1 0.4926 -1.6407 3.2633 50 1 -0.2363 -0.4313 5.2805 51 1 0.4480 1.9083 5.6279 52 1 1.8614 3.0386 3.9582 53 1 2.5906 1.8292 1.9411 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245797173.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:46 Heat of formation + Delta-G solvation = 21.926740 kcal Electronic energy + Delta-G solvation = -27364.774367 eV Core-core repulsion = 24007.783129 eV Total energy + Delta-G solvation = -3356.991238 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.38979 -38.97225 -36.78645 -33.81905 -32.42328 -31.97839 -31.07861 -30.18460 -28.03944 -26.59900 -26.24252 -26.11203 -23.76360 -22.84032 -22.05146 -21.72343 -20.94971 -19.41228 -17.89629 -17.10540 -16.67548 -15.78112 -15.39940 -15.17549 -14.82443 -14.45832 -14.38009 -14.11529 -14.01509 -13.58108 -13.34450 -13.25676 -12.98878 -12.91904 -12.57633 -12.46705 -12.36733 -11.96979 -11.87774 -11.55810 -11.51414 -11.34197 -11.15448 -11.00324 -10.84305 -10.72423 -10.61795 -10.45330 -10.39911 -10.19730 -10.09582 -9.76459 -9.64694 -9.08401 -9.05957 -8.88840 -8.75543 -8.47471 -8.00634 -5.97732 -3.93587 1.20346 1.23580 3.33879 3.41357 3.44754 3.62041 4.11255 4.48974 4.50339 4.54587 4.80947 4.82047 4.89405 4.96750 5.03556 5.21806 5.32823 5.35005 5.36094 5.39548 5.45601 5.51067 5.56985 5.58591 5.67273 5.73733 5.78046 5.78321 5.87848 5.91168 5.93093 6.00173 6.05119 6.10733 6.16093 6.25619 6.29919 6.31663 6.33088 6.35664 6.39196 6.55858 6.58500 6.76844 6.84377 6.85004 7.08105 7.17360 7.22719 7.31260 7.39293 7.42731 7.56063 7.87909 8.62558 9.08730 9.65701 11.15564 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.028129 B = 0.002731 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.187313 B =10248.344408 C =10617.939275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.077 4.077 3 H 0.080 0.920 4 C 0.060 3.940 5 N -0.529 5.529 6 C 0.064 3.936 7 C -0.049 4.049 8 C -0.121 4.121 9 C -0.149 4.149 10 C -0.002 4.002 11 C -0.505 4.505 12 H 0.077 0.923 13 C 0.064 3.936 14 N -0.906 5.906 15 Si 0.875 3.125 16 H -0.278 1.278 17 H -0.290 1.290 18 H -0.267 1.267 19 C 0.034 3.966 20 C -0.109 4.109 21 C -0.046 4.046 22 H 0.072 0.928 23 C -0.063 4.063 24 C -0.120 4.120 25 C -0.121 4.121 26 C -0.130 4.130 27 C -0.119 4.119 28 C -0.113 4.113 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.028 0.972 33 H 0.072 0.928 34 H 0.025 0.975 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.042 0.958 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.051 0.949 42 H 0.012 0.988 43 H 0.010 0.990 44 H 0.261 0.739 45 H 0.028 0.972 46 H 0.112 0.888 47 H 0.073 0.927 48 H 0.064 0.936 49 H 0.118 0.882 50 H 0.118 0.882 51 H 0.117 0.883 52 H 0.119 0.881 53 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.599 3.522 16.800 26.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.096 4.096 3 H 0.099 0.901 4 C -0.069 4.069 5 N -0.253 5.253 6 C -0.063 4.063 7 C -0.050 4.050 8 C -0.178 4.178 9 C -0.206 4.206 10 C -0.040 4.040 11 C -0.543 4.543 12 H 0.095 0.905 13 C -0.136 4.136 14 N -0.546 5.546 15 Si 0.703 3.297 16 H -0.204 1.204 17 H -0.216 1.216 18 H -0.192 1.192 19 C -0.093 4.093 20 C -0.147 4.147 21 C -0.064 4.064 22 H 0.090 0.910 23 C -0.063 4.063 24 C -0.138 4.138 25 C -0.139 4.139 26 C -0.148 4.148 27 C -0.137 4.137 28 C -0.131 4.131 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.044 0.956 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.030 0.970 43 H 0.029 0.971 44 H 0.071 0.929 45 H 0.046 0.954 46 H 0.130 0.870 47 H 0.092 0.908 48 H 0.083 0.917 49 H 0.136 0.864 50 H 0.136 0.864 51 H 0.135 0.865 52 H 0.137 0.863 53 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -20.277 3.984 16.712 26.577 hybrid contribution -0.664 -0.883 -1.124 1.576 sum -20.941 3.101 15.588 26.289 Atomic orbital electron populations 1.21800 0.95215 1.01566 1.01710 1.21178 0.94855 1.00303 0.93245 0.90150 1.22115 0.88500 0.98426 0.97824 1.62015 1.06367 1.54212 1.02688 1.22312 0.96534 0.96762 0.90710 1.20431 0.90920 0.95498 0.98139 1.21799 1.00772 0.96379 0.98876 1.22339 1.00923 0.97963 0.99357 1.19674 0.97182 0.95862 0.91292 1.21126 0.89140 1.49407 0.94599 0.90549 1.25017 0.94672 0.95007 0.98943 1.69908 1.04836 1.51719 1.28158 0.86853 0.80020 0.78299 0.84532 1.20444 1.21625 1.19178 1.22854 1.02766 0.94058 0.89623 1.21724 0.93591 1.02086 0.97312 1.20319 0.96315 0.98270 0.91504 0.90993 1.19887 0.96479 0.94264 0.95721 1.21068 0.98564 0.99808 0.94405 1.21106 1.00260 0.94913 0.97593 1.21107 0.99122 0.95201 0.99404 1.21154 0.98165 0.99885 0.94461 1.21073 1.00014 0.94303 0.97663 0.92480 0.92685 0.93015 0.95428 0.90958 0.95639 0.91206 0.93181 0.92416 0.93898 0.93186 0.92418 0.93017 0.96997 0.97150 0.92935 0.95402 0.87001 0.90826 0.91743 0.86436 0.86429 0.86479 0.86264 0.85850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.99 37.16 0.33 -0.98 16 2 C -0.08 -0.79 2.24 -90.54 -0.20 -0.99 16 3 H 0.08 0.89 7.31 -51.93 -0.38 0.51 16 4 C 0.06 0.71 4.75 -3.83 -0.02 0.69 16 5 N -0.53 -7.38 3.85 -234.65 -0.90 -8.28 16 6 C 0.06 1.05 4.52 -3.82 -0.02 1.03 16 7 C -0.05 -0.94 0.52 -154.51 -0.08 -1.03 16 8 C -0.12 -2.28 7.45 37.16 0.28 -2.01 16 9 C -0.15 -2.72 7.08 37.16 0.26 -2.46 16 10 C 0.00 -0.06 2.88 -27.89 -0.08 -0.14 16 11 C -0.50 -13.96 8.36 -34.44 -0.29 -14.25 16 12 H 0.08 2.26 6.28 -52.48 -0.33 1.93 16 13 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 14 N -0.91 -27.92 13.96 55.43 0.77 -27.15 16 15 Si 0.88 21.88 27.47 -169.99 -4.67 17.21 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 18 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 19 C 0.03 0.45 2.97 -3.83 -0.01 0.43 16 20 C -0.11 -1.22 5.22 -26.65 -0.14 -1.36 16 21 C -0.05 -0.46 1.94 -91.65 -0.18 -0.64 16 22 H 0.07 0.73 7.88 -51.93 -0.41 0.32 16 23 C -0.06 -0.62 3.65 -104.62 -0.38 -1.00 16 24 C -0.12 -1.10 9.67 -39.58 -0.38 -1.48 16 25 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 26 C -0.13 -1.09 10.05 -39.58 -0.40 -1.49 16 27 C -0.12 -1.05 10.05 -39.58 -0.40 -1.45 16 28 C -0.11 -1.10 8.66 -39.58 -0.34 -1.44 16 29 H 0.06 0.52 7.30 -51.93 -0.38 0.15 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.86 8.12 -51.93 -0.42 0.43 16 34 H 0.03 0.41 7.97 -51.93 -0.41 0.00 16 35 H 0.07 1.17 7.96 -51.93 -0.41 0.75 16 36 H 0.05 0.83 5.13 -51.93 -0.27 0.56 16 37 H 0.06 1.22 6.59 -51.93 -0.34 0.88 16 38 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.05 0.97 7.88 -51.93 -0.41 0.56 16 40 H 0.06 1.12 7.36 -51.93 -0.38 0.73 16 41 H 0.05 0.80 4.11 -51.93 -0.21 0.58 16 42 H 0.01 0.28 7.17 -51.93 -0.37 -0.09 16 43 H 0.01 0.24 7.55 -51.93 -0.39 -0.15 16 44 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.03 0.37 7.53 -51.93 -0.39 -0.02 16 46 H 0.11 1.62 3.35 -51.93 -0.17 1.44 16 47 H 0.07 0.86 7.31 -51.93 -0.38 0.48 16 48 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.12 0.93 7.95 -52.49 -0.42 0.52 16 50 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 51 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 52 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 53 H 0.12 1.17 7.06 -52.49 -0.37 0.80 16 LS Contribution 385.55 15.07 5.81 5.81 Total: -1.00 -29.68 385.55 -10.93 -40.62 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -9.41 Total: 0.00 kcal Atomic # 6 Polarization: -25.67 SS G_CDS: -2.54 Total: -28.21 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: -0.13 Total: -35.42 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.67 Total: 17.21 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.68 -10.93 -40.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245797173.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.543 kcal (2) G-P(sol) polarization free energy of solvation -29.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds