Wall clock time and date at job start Tue Mar 31 2020 10:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.50280 * 2 1 4 4 C 1.53041 * 109.53446 * 239.90435 * 2 1 3 5 5 N 1.46846 * 109.52272 * 180.85974 * 4 2 1 6 6 C 1.46905 * 110.99834 * 185.83758 * 5 4 2 7 7 C 1.53002 * 109.46866 * 182.49975 * 6 5 4 8 8 C 1.53000 * 109.47176 * 320.94142 * 7 6 5 9 9 C 1.52998 * 109.46734 * 80.94298 * 7 6 5 10 10 C 1.52996 * 109.47054 * 200.94235 * 7 6 5 11 11 C 1.50699 * 109.47455 * 179.97438 * 10 7 6 12 12 H 1.08003 * 119.99547 * 0.02562 * 11 10 7 13 13 C 1.37872 * 120.00476 * 179.97438 * 11 10 7 14 14 N 1.31508 * 120.00306 * 180.02562 * 13 11 10 15 15 Si 1.86809 * 119.99837 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.46899 * 89.99601 * 15 13 11 17 17 H 1.48496 * 109.47094 * 209.99884 * 15 13 11 18 18 H 1.48501 * 109.46730 * 329.99665 * 15 13 11 19 19 C 1.46850 * 111.19698 * 61.74415 * 5 4 2 20 20 C 1.53042 * 109.52088 * 298.25486 * 19 5 4 21 21 C 1.53118 * 109.50337 * 120.08331 * 2 1 3 22 22 H 1.09002 * 109.52462 * 57.66462 * 21 2 1 23 23 C 1.50699 * 109.52053 * 297.53989 * 21 2 1 24 24 C 1.38234 * 120.00123 * 120.00039 * 23 21 2 25 25 C 1.38241 * 119.99715 * 179.72111 * 24 23 21 26 26 C 1.38237 * 120.00174 * 0.27970 * 25 24 23 27 27 C 1.38236 * 119.99682 * 359.95642 * 26 25 24 28 28 C 1.38231 * 120.00601 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.47217 * 299.92209 * 1 2 3 30 30 H 1.09006 * 109.46962 * 59.91762 * 1 2 3 31 31 H 1.08995 * 109.47269 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46113 * 300.88093 * 4 2 1 33 33 H 1.09005 * 109.46513 * 60.85439 * 4 2 1 34 34 H 1.09001 * 109.47010 * 302.50222 * 6 5 4 35 35 H 1.08999 * 109.46650 * 62.50074 * 6 5 4 36 36 H 1.09000 * 109.46906 * 60.00493 * 8 7 6 37 37 H 1.09000 * 109.47070 * 179.97438 * 8 7 6 38 38 H 1.08993 * 109.47012 * 300.00476 * 8 7 6 39 39 H 1.09001 * 109.47106 * 85.67838 * 9 7 6 40 40 H 1.09004 * 109.46483 * 205.66925 * 9 7 6 41 41 H 1.08994 * 109.47814 * 325.67240 * 9 7 6 42 42 H 1.09003 * 109.47030 * 300.00119 * 10 7 6 43 43 H 1.08998 * 109.47256 * 59.99976 * 10 7 6 44 44 H 0.97002 * 120.00058 * 180.02562 * 14 13 11 45 45 H 1.09002 * 109.46404 * 58.26921 * 19 5 4 46 46 H 1.09000 * 109.45953 * 178.25268 * 19 5 4 47 47 H 1.09002 * 109.50245 * 299.23835 * 20 19 5 48 48 H 1.09002 * 109.49852 * 179.11852 * 20 19 5 49 49 H 1.07993 * 120.00245 * 0.02562 * 24 23 21 50 50 H 1.07995 * 119.99829 * 180.25564 * 25 24 23 51 51 H 1.07996 * 119.99526 * 179.97438 * 26 25 24 52 52 H 1.08001 * 119.99615 * 179.97438 * 27 26 25 53 53 H 1.07995 * 120.00287 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0417 -0.7232 -1.2479 5 7 3.5101 -0.7411 -1.2373 6 6 4.0387 -1.3047 -2.4866 7 6 5.5658 -1.3644 -2.4131 8 6 6.0922 -0.1089 -1.7149 9 6 5.9902 -2.6036 -1.6226 10 6 6.1419 -1.4402 -3.8285 11 6 7.6460 -1.4984 -3.7562 12 1 8.1415 -1.4832 -2.7966 13 6 8.3896 -1.5720 -4.9149 14 7 9.7022 -1.6232 -4.8518 15 14 7.5326 -1.5990 -6.5746 16 1 7.3625 -0.2082 -7.0665 17 1 8.3532 -2.3697 -7.5429 18 1 6.2007 -2.2405 -6.4334 19 6 4.0238 -1.4717 -0.0716 20 6 3.5712 -0.7707 1.2114 21 6 2.0412 -0.7235 1.2489 22 1 1.6449 -1.7387 1.2697 23 6 1.5903 0.0185 2.4806 24 6 0.7925 -0.6144 3.4154 25 6 0.3836 0.0645 4.5481 26 6 0.7678 1.3780 4.7432 27 6 1.5616 2.0123 3.8060 28 6 1.9708 1.3335 2.6735 29 1 -0.3634 0.5126 0.8907 30 1 -0.3633 0.5151 -0.8893 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6660 -1.7465 -1.2543 33 1 1.6915 -0.2022 -2.1390 34 1 3.6421 -2.3101 -2.6281 35 1 3.7396 -0.6749 -3.3244 36 1 5.6819 -0.0549 -0.7065 37 1 7.1801 -0.1516 -1.6621 38 1 5.7898 0.7739 -2.2780 39 1 6.0370 -3.4629 -2.2916 40 1 6.9719 -2.4337 -1.1803 41 1 5.2644 -2.7971 -0.8328 42 1 5.7668 -2.3346 -4.3259 43 1 5.8395 -0.5574 -4.3917 44 1 10.2253 -1.6747 -5.6670 45 1 3.6388 -2.4914 -0.0834 46 1 5.1129 -1.4941 -0.1082 47 1 3.9673 0.2446 1.2305 48 1 3.9396 -1.3221 2.0766 49 1 0.4926 -1.6407 3.2633 50 1 -0.2363 -0.4313 5.2805 51 1 0.4480 1.9083 5.6279 52 1 1.8614 3.0386 3.9582 53 1 2.5906 1.8292 1.9411 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245797173.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:45 Heat of formation + Delta-G solvation = 8.068756 kcal Electronic energy + Delta-G solvation = -27365.375294 eV Core-core repulsion = 24007.783129 eV Total energy + Delta-G solvation = -3357.592165 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.31101 -39.94655 -37.96603 -35.21370 -33.99642 -33.18141 -31.72308 -31.04356 -29.84920 -28.03744 -27.53301 -27.12902 -24.99651 -23.74117 -23.40610 -22.60398 -21.90582 -20.26830 -19.47315 -18.81893 -17.79545 -16.86357 -16.33544 -16.14211 -16.10563 -15.64637 -15.45426 -15.30620 -15.08089 -14.82803 -14.63797 -14.34267 -14.20396 -14.14315 -13.82719 -13.52869 -13.42720 -13.22318 -13.01913 -12.76643 -12.67931 -12.51760 -12.32558 -12.25138 -12.12564 -12.05407 -12.00496 -11.74524 -11.68157 -11.51265 -11.40588 -11.30309 -11.10345 -10.86343 -10.70115 -10.46693 -9.73859 -9.46557 -9.11887 -8.21655 -6.21773 0.54002 0.58041 1.35782 1.36944 1.48166 2.39489 2.95599 3.02082 3.13489 3.70783 3.75955 3.92460 4.11279 4.15927 4.17356 4.22435 4.25627 4.32477 4.35673 4.40638 4.48727 4.58360 4.64753 4.65096 4.71725 4.74881 4.79255 4.83410 4.88540 4.89468 4.92939 4.98884 5.01488 5.09166 5.13737 5.16683 5.17564 5.24737 5.26661 5.30502 5.36868 5.37275 5.47037 5.51184 5.56070 5.63263 5.67244 5.71030 5.78143 5.81213 5.85849 6.20737 6.23849 6.32583 6.43038 6.85566 7.40753 8.94741 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.028129 B = 0.002731 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.187313 B =10248.344408 C =10617.939275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.071 4.071 3 H 0.071 0.929 4 C 0.060 3.940 5 N -0.534 5.534 6 C 0.074 3.926 7 C -0.048 4.048 8 C -0.110 4.110 9 C -0.142 4.142 10 C -0.001 4.001 11 C -0.501 4.501 12 H 0.042 0.958 13 C 0.000 4.000 14 N -0.955 5.955 15 Si 0.941 3.059 16 H -0.271 1.271 17 H -0.288 1.288 18 H -0.249 1.249 19 C 0.034 3.966 20 C -0.103 4.103 21 C -0.038 4.038 22 H 0.076 0.924 23 C -0.072 4.072 24 C -0.129 4.129 25 C -0.126 4.126 26 C -0.135 4.135 27 C -0.128 4.128 28 C -0.126 4.126 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.032 0.968 33 H 0.074 0.926 34 H 0.031 0.969 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.024 0.976 38 H 0.037 0.963 39 H 0.035 0.965 40 H 0.036 0.964 41 H 0.084 0.916 42 H 0.012 0.988 43 H 0.011 0.989 44 H 0.262 0.738 45 H 0.033 0.967 46 H 0.095 0.905 47 H 0.066 0.934 48 H 0.071 0.929 49 H 0.128 0.872 50 H 0.137 0.863 51 H 0.137 0.863 52 H 0.132 0.868 53 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.778 3.512 17.532 29.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.089 4.089 3 H 0.089 0.911 4 C -0.068 4.068 5 N -0.258 5.258 6 C -0.054 4.054 7 C -0.048 4.048 8 C -0.167 4.167 9 C -0.199 4.199 10 C -0.039 4.039 11 C -0.540 4.540 12 H 0.061 0.939 13 C -0.196 4.196 14 N -0.597 5.597 15 Si 0.765 3.235 16 H -0.196 1.196 17 H -0.214 1.214 18 H -0.173 1.173 19 C -0.093 4.093 20 C -0.141 4.141 21 C -0.057 4.057 22 H 0.094 0.906 23 C -0.072 4.072 24 C -0.147 4.147 25 C -0.144 4.144 26 C -0.153 4.153 27 C -0.146 4.146 28 C -0.144 4.144 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.049 0.951 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.043 0.957 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.103 0.897 42 H 0.030 0.970 43 H 0.029 0.971 44 H 0.071 0.929 45 H 0.051 0.949 46 H 0.113 0.887 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.146 0.854 50 H 0.155 0.845 51 H 0.154 0.846 52 H 0.150 0.850 53 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -23.480 3.977 17.460 29.529 hybrid contribution 0.351 -0.852 -1.221 1.529 sum -23.129 3.125 16.239 28.433 Atomic orbital electron populations 1.21728 0.94004 1.01993 1.01870 1.21106 0.95729 0.99520 0.92579 0.91064 1.22173 0.86837 0.98963 0.98780 1.61977 1.07919 1.54085 1.01834 1.22071 0.93974 0.97299 0.92034 1.20348 0.93170 0.95776 0.95549 1.21684 0.98576 0.96148 1.00289 1.22300 1.00817 0.96975 0.99806 1.19645 0.94356 0.95633 0.94243 1.21406 0.91511 1.47853 0.93187 0.93940 1.25927 0.95284 0.95081 1.03273 1.70064 1.06626 1.53763 1.29256 0.85797 0.79511 0.78730 0.79426 1.19635 1.21449 1.17266 1.22788 1.01719 0.94613 0.90200 1.21653 0.94634 1.01448 0.96387 1.20225 0.95235 0.98507 0.91696 0.90586 1.19856 0.97171 0.94314 0.95838 1.21266 0.98462 1.00445 0.94503 1.21402 1.00160 0.95052 0.97748 1.21409 0.98613 0.95426 0.99876 1.21388 0.98231 1.00639 0.94340 1.21150 1.00499 0.94610 0.98140 0.92596 0.92248 0.92424 0.94933 0.90753 0.95065 0.91324 0.90760 0.95720 0.94400 0.94611 0.94491 0.89746 0.96955 0.97087 0.92920 0.94887 0.88683 0.91541 0.91080 0.85358 0.84486 0.84562 0.85013 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.99 71.98 0.65 -1.52 16 2 C -0.07 -1.30 2.24 -10.74 -0.02 -1.33 16 3 H 0.07 1.47 7.31 -2.39 -0.02 1.45 16 4 C 0.06 1.29 4.75 86.33 0.41 1.70 16 5 N -0.53 -13.91 3.85 -896.30 -3.45 -17.36 16 6 C 0.07 2.29 4.52 86.30 0.39 2.68 16 7 C -0.05 -1.82 0.52 -52.18 -0.03 -1.85 16 8 C -0.11 -4.18 7.45 71.98 0.54 -3.65 16 9 C -0.14 -5.21 7.08 71.98 0.51 -4.70 16 10 C 0.00 -0.05 2.88 29.85 0.09 0.04 16 11 C -0.50 -28.51 8.36 25.60 0.21 -28.29 16 12 H 0.04 2.65 6.28 -2.91 -0.02 2.63 16 13 C 0.00 -0.01 5.47 84.65 0.46 0.46 16 14 N -0.96 -60.66 13.96 21.44 0.30 -60.36 16 15 Si 0.94 45.20 27.47 68.60 1.88 47.09 16 16 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 17 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 18 H -0.25 -11.14 6.54 99.48 0.65 -10.49 16 19 C 0.03 0.82 2.97 86.33 0.26 1.08 16 20 C -0.10 -2.14 5.22 30.65 0.16 -1.98 16 21 C -0.04 -0.69 1.94 -11.46 -0.02 -0.71 16 22 H 0.08 1.33 7.88 -2.39 -0.02 1.31 16 23 C -0.07 -1.27 3.65 -19.86 -0.07 -1.34 16 24 C -0.13 -2.06 9.67 22.27 0.22 -1.84 16 25 C -0.13 -1.81 10.05 22.27 0.22 -1.59 16 26 C -0.14 -1.96 10.05 22.27 0.22 -1.73 16 27 C -0.13 -2.06 10.05 22.27 0.22 -1.84 16 28 C -0.13 -2.29 8.66 22.27 0.19 -2.09 16 29 H 0.05 0.90 7.30 -2.39 -0.02 0.89 16 30 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.03 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.07 1.58 8.12 -2.38 -0.02 1.56 16 34 H 0.03 0.94 7.97 -2.39 -0.02 0.92 16 35 H 0.07 2.16 7.96 -2.39 -0.02 2.14 16 36 H 0.07 2.44 5.13 -2.39 -0.01 2.43 16 37 H 0.02 1.07 6.59 -2.39 -0.02 1.05 16 38 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.03 1.38 7.88 -2.39 -0.02 1.36 16 40 H 0.04 1.47 7.36 -2.38 -0.02 1.45 16 41 H 0.08 2.51 4.11 -2.39 -0.01 2.50 16 42 H 0.01 0.57 7.17 -2.39 -0.02 0.55 16 43 H 0.01 0.51 7.55 -2.39 -0.02 0.49 16 44 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 45 H 0.03 0.79 7.53 -2.39 -0.02 0.77 16 46 H 0.10 2.63 3.35 -2.39 -0.01 2.63 16 47 H 0.07 1.48 7.31 -2.39 -0.02 1.46 16 48 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.13 1.70 7.95 -2.91 -0.02 1.68 16 50 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 51 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 52 H 0.13 1.68 8.06 -2.91 -0.02 1.66 16 53 H 0.12 2.18 7.06 -2.91 -0.02 2.16 16 Total: -1.00 -64.88 385.55 4.14 -60.74 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.80 Total: 18.39 kcal Atomic # 6 Polarization: -53.10 SS G_CDS: 4.61 Total: -48.49 kcal Atomic # 7 Polarization: -74.57 SS G_CDS: -3.15 Total: -77.72 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.88 Total: 47.09 kcal Total: -64.88 4.14 -60.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245797173.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.804 kcal (2) G-P(sol) polarization free energy of solvation -64.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds