Wall clock time and date at job start Tue Mar 31 2020 10:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 5 5 C 1.46901 * 110.99870 * 274.99984 * 4 2 1 6 6 C 1.53004 * 109.46916 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.46700 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46820 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00070 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00019 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00228 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 120.00068 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46757 * 60.00769 * 12 10 8 14 14 H 1.48495 * 109.46824 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47105 * 300.00477 * 12 10 8 16 16 C 1.50696 * 109.47017 * 239.99812 * 2 1 3 17 17 C 1.38235 * 120.00013 * 279.72894 * 16 2 1 18 18 C 1.38236 * 120.00344 * 179.76693 * 17 16 2 19 19 C 1.38235 * 119.99657 * 0.50536 * 18 17 16 20 20 C 1.50704 * 119.99989 * 179.72322 * 19 18 17 21 21 C 1.52997 * 109.46799 * 60.02380 * 20 19 18 22 22 C 1.53002 * 109.46615 * 179.97438 * 21 20 19 23 23 C 1.52996 * 109.47292 * 60.00374 * 22 21 20 24 24 C 1.53006 * 109.46961 * 299.99601 * 23 22 21 25 25 C 1.52995 * 109.47196 * 300.02063 * 20 19 18 26 26 C 1.38239 * 120.00229 * 359.74917 * 19 18 17 27 27 C 1.38235 * 120.00125 * 100.00124 * 16 2 1 28 28 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 29 29 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 31 31 H 1.00901 * 110.99869 * 151.04696 * 4 2 1 32 32 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 33 33 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 34 34 H 1.08995 * 109.46615 * 299.99641 * 6 5 4 35 35 H 1.08996 * 109.46939 * 60.00272 * 6 5 4 36 36 H 1.08993 * 109.47740 * 299.99810 * 7 6 5 37 37 H 1.09005 * 109.47573 * 59.99976 * 7 6 5 38 38 H 0.97002 * 120.00555 * 179.97438 * 11 10 8 39 39 H 1.08002 * 120.00005 * 359.97438 * 17 16 2 40 40 H 1.07991 * 120.00241 * 180.22660 * 18 17 16 41 41 H 1.09003 * 109.46866 * 180.02562 * 20 19 18 42 42 H 1.08994 * 109.47157 * 299.99583 * 21 20 19 43 43 H 1.09005 * 109.47062 * 60.00256 * 21 20 19 44 44 H 1.08994 * 109.47197 * 299.99778 * 22 21 20 45 45 H 1.09001 * 109.46774 * 180.02562 * 22 21 20 46 46 H 1.08997 * 109.46971 * 179.97438 * 23 22 21 47 47 H 1.09003 * 109.47508 * 59.99641 * 23 22 21 48 48 H 1.09003 * 109.47043 * 300.00325 * 24 23 22 49 49 H 1.08992 * 109.47318 * 179.97438 * 24 23 22 50 50 H 1.09001 * 109.47434 * 300.00036 * 25 20 19 51 51 H 1.09003 * 109.47171 * 60.00238 * 25 20 19 52 52 H 1.07990 * 120.00626 * 179.97438 * 26 19 18 53 53 H 1.08001 * 120.00151 * 0.02562 * 27 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5962 -0.5328 3.5742 7 6 2.6622 0.4205 4.7691 8 6 3.1677 -0.3237 5.9781 9 1 3.4173 -1.3717 5.9017 10 6 3.3124 0.3336 7.1815 11 7 3.0089 1.6098 7.2744 12 14 3.9397 -0.5888 8.6800 13 1 5.2955 -1.1255 8.3991 14 1 4.0036 0.3365 9.8397 15 1 3.0181 -1.7105 8.9924 16 6 2.0323 -0.7104 -1.2304 17 6 2.0719 -2.0918 -1.2631 18 6 2.5282 -2.7437 -2.3936 19 6 2.9546 -2.0139 -3.4874 20 6 3.4578 -2.7244 -4.7175 21 6 2.3503 -3.6183 -5.2790 22 6 2.8611 -4.3391 -6.5282 23 6 4.0730 -5.1980 -6.1618 24 6 5.1805 -4.3040 -5.6002 25 6 4.6696 -3.5832 -4.3505 26 6 2.9199 -0.6324 -3.4528 27 6 2.4587 0.0193 -2.3243 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 2.9173 -1.1205 1.0288 32 1 2.7589 1.0462 2.1182 33 1 1.0871 0.6164 2.5525 34 1 1.9201 -1.3565 3.8030 35 1 3.5917 -0.9261 3.3683 36 1 3.3384 1.2440 4.5400 37 1 1.6669 0.8143 4.9752 38 1 3.1104 2.0722 8.1210 39 1 1.7433 -2.6619 -0.4067 40 1 2.5557 -3.8229 -2.4205 41 1 3.7475 -1.9895 -5.4686 42 1 2.0608 -4.3532 -4.5280 43 1 1.4870 -3.0063 -5.5405 44 1 3.1503 -3.6040 -7.2791 45 1 2.0719 -4.9756 -6.9285 46 1 4.4366 -5.7118 -7.0517 47 1 3.7837 -5.9332 -5.4108 48 1 5.4698 -3.5688 -6.3512 49 1 6.0438 -4.9159 -5.3388 50 1 5.4586 -2.9464 -3.9505 51 1 4.3800 -4.3182 -3.5994 52 1 3.2534 -0.0622 -4.3071 53 1 2.4322 1.0987 -2.2969 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000482462188.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:56 Heat of formation + Delta-G solvation = -28.169670 kcal Electronic energy + Delta-G solvation = -25407.360261 eV Core-core repulsion = 22048.196680 eV Total energy + Delta-G solvation = -3359.163581 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.21745 -38.53498 -36.61756 -34.12002 -32.75387 -31.54944 -31.08572 -30.98664 -29.50953 -28.16826 -25.99486 -24.01075 -23.01249 -22.89603 -22.51326 -21.40507 -20.31805 -19.98352 -19.70760 -16.82940 -16.26383 -15.90831 -15.82328 -14.98955 -14.87928 -14.54197 -14.52142 -14.30915 -14.23870 -13.94238 -13.65199 -13.54209 -13.22406 -13.04384 -12.55210 -12.52878 -12.24181 -12.12368 -12.04710 -11.81959 -11.58300 -11.49506 -11.48491 -11.31993 -11.07043 -10.89711 -10.73601 -10.69474 -10.52575 -10.50676 -10.45070 -10.30243 -9.65807 -9.31282 -9.04421 -8.96430 -8.57398 -8.31291 -8.16223 -5.96552 -3.98583 1.24223 1.35811 3.35808 3.39717 3.42596 3.65603 4.24829 4.34581 4.38364 4.46879 4.50902 4.69927 4.72299 4.89401 4.93459 4.95534 4.98193 5.16172 5.16603 5.19527 5.29809 5.33131 5.39018 5.39863 5.44482 5.47843 5.55759 5.67721 5.76275 5.77945 5.78740 5.79321 5.84364 5.86357 5.91377 5.95382 5.99504 6.04085 6.04968 6.09958 6.29105 6.36296 6.40368 6.53998 6.56043 6.75789 6.83673 6.94839 7.17238 7.39221 7.66476 7.71792 7.87242 8.03903 8.47271 9.08366 9.65091 11.14806 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.020428 B = 0.001947 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.371124 B =14381.215979 C =15239.027128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.121 3.879 3 H 0.048 0.952 4 N -0.684 5.684 5 C 0.059 3.941 6 C -0.106 4.106 7 C 0.022 3.978 8 C -0.519 4.519 9 H 0.054 0.946 10 C 0.055 3.945 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.277 1.277 16 C -0.088 4.088 17 C -0.097 4.097 18 C -0.116 4.116 19 C -0.081 4.081 20 C -0.045 4.045 21 C -0.110 4.110 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.120 4.120 25 C -0.111 4.111 26 C -0.120 4.120 27 C -0.113 4.113 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.339 0.661 32 H 0.024 0.976 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.044 0.956 36 H 0.013 0.987 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.132 0.868 40 H 0.119 0.881 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.061 0.939 49 H 0.062 0.938 50 H 0.063 0.937 51 H 0.065 0.935 52 H 0.117 0.883 53 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.522 -9.225 -30.480 31.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.011 3.989 3 H 0.066 0.934 4 N -0.316 5.316 5 C -0.069 4.069 6 C -0.144 4.144 7 C -0.015 4.015 8 C -0.557 4.557 9 H 0.073 0.927 10 C -0.146 4.146 11 N -0.536 5.536 12 Si 0.720 3.280 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.202 1.202 16 C -0.088 4.088 17 C -0.115 4.115 18 C -0.134 4.134 19 C -0.082 4.082 20 C -0.063 4.063 21 C -0.148 4.148 22 C -0.157 4.157 23 C -0.158 4.158 24 C -0.157 4.157 25 C -0.149 4.149 26 C -0.138 4.138 27 C -0.132 4.132 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.157 0.843 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.032 0.968 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.150 0.850 40 H 0.136 0.864 41 H 0.093 0.907 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.080 0.920 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.082 0.918 51 H 0.084 0.916 52 H 0.135 0.865 53 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.152 -9.314 -30.174 31.600 hybrid contribution 1.135 0.241 0.703 1.357 sum -0.016 -9.073 -29.471 30.836 Atomic orbital electron populations 1.21761 0.93785 1.02421 1.01150 1.20447 0.96030 0.95207 0.87184 0.93392 1.60705 1.33288 1.33765 1.03808 1.22180 1.00489 0.93693 0.90578 1.21617 0.99255 0.99459 0.94117 1.19061 0.97091 0.94221 0.91176 1.21224 1.43543 0.96355 0.94593 0.92735 1.25035 0.95674 0.94895 0.98951 1.69957 1.48909 1.08971 1.25775 0.86653 0.79423 0.79604 0.82287 1.20283 1.21329 1.20231 1.20018 0.99136 0.94125 0.95517 1.21103 0.98383 0.93959 0.98062 1.20975 0.99704 0.99602 0.93116 1.19822 0.99324 0.93486 0.95524 1.20145 0.95185 0.96728 0.94269 1.21597 0.97449 0.98428 0.97321 1.21543 0.97641 0.98904 0.97627 1.21549 0.95639 0.97987 1.00650 1.21554 0.97870 0.98770 0.97538 1.21614 0.96996 0.98647 0.97623 1.20957 1.00920 0.93789 0.98098 1.21022 0.99208 0.99651 0.93270 0.92969 0.91979 0.92178 0.84267 0.95789 0.91405 0.92552 0.93711 0.96842 0.96587 0.93012 0.85044 0.86353 0.90739 0.91675 0.91924 0.92079 0.92031 0.92214 0.91962 0.92069 0.91971 0.91832 0.91637 0.86480 0.86352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 9.39 37.16 0.35 -1.28 16 2 C 0.12 1.56 2.82 -68.86 -0.19 1.37 16 3 H 0.05 0.64 7.66 -51.93 -0.40 0.24 16 4 N -0.68 -10.17 5.69 -107.95 -0.61 -10.79 16 5 C 0.06 1.04 5.48 -3.82 -0.02 1.02 16 6 C -0.11 -2.25 5.41 -26.73 -0.14 -2.39 16 7 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 8 C -0.52 -15.01 9.11 -34.44 -0.31 -15.33 16 9 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 10 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 11 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 12 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 C -0.09 -1.03 4.72 -104.63 -0.49 -1.53 16 17 C -0.10 -1.10 9.00 -39.58 -0.36 -1.46 16 18 C -0.12 -1.17 8.71 -39.58 -0.34 -1.51 16 19 C -0.08 -0.77 4.78 -104.62 -0.50 -1.27 16 20 C -0.04 -0.34 2.36 -91.77 -0.22 -0.55 16 21 C -0.11 -0.76 5.02 -26.73 -0.13 -0.90 16 22 C -0.12 -0.71 5.92 -26.73 -0.16 -0.87 16 23 C -0.12 -0.70 5.92 -26.73 -0.16 -0.86 16 24 C -0.12 -0.74 5.93 -26.70 -0.16 -0.90 16 25 C -0.11 -0.81 5.02 -26.71 -0.13 -0.94 16 26 C -0.12 -1.17 9.67 -39.58 -0.38 -1.55 16 27 C -0.11 -1.22 9.67 -39.58 -0.38 -1.60 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.77 7.45 -51.93 -0.39 0.39 16 31 H 0.34 4.93 7.98 -39.29 -0.31 4.62 16 32 H 0.02 0.43 8.06 -51.93 -0.42 0.01 16 33 H 0.07 1.22 7.44 -51.93 -0.39 0.83 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.13 1.53 7.71 -52.49 -0.40 1.13 16 40 H 0.12 1.03 7.10 -52.49 -0.37 0.66 16 41 H 0.07 0.54 7.88 -51.93 -0.41 0.13 16 42 H 0.06 0.47 7.39 -51.93 -0.38 0.09 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 46 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 49 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 51 H 0.06 0.50 7.39 -51.93 -0.38 0.11 16 52 H 0.12 0.94 7.95 -52.49 -0.42 0.52 16 53 H 0.12 1.14 8.04 -52.49 -0.42 0.71 16 LS Contribution 411.28 15.07 6.20 6.20 Total: -1.00 -30.05 411.28 -12.84 -42.88 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -10.16 Total: -0.07 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: -3.98 Total: -28.59 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: 0.12 Total: -37.41 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -30.05 -12.84 -42.88 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000482462188.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.714 kcal (2) G-P(sol) polarization free energy of solvation -30.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds