Wall clock time and date at job start Tue Mar 31 2020 10:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 5 5 C 1.46901 * 110.99870 * 274.99984 * 4 2 1 6 6 C 1.53004 * 109.46916 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.46700 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46820 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00070 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00019 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00228 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 120.00068 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46757 * 60.00769 * 12 10 8 14 14 H 1.48495 * 109.46824 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47105 * 300.00477 * 12 10 8 16 16 C 1.50696 * 109.47017 * 239.99812 * 2 1 3 17 17 C 1.38235 * 120.00013 * 279.72894 * 16 2 1 18 18 C 1.38236 * 120.00344 * 179.76693 * 17 16 2 19 19 C 1.38235 * 119.99657 * 0.50536 * 18 17 16 20 20 C 1.50704 * 119.99989 * 179.72322 * 19 18 17 21 21 C 1.52997 * 109.46799 * 60.02380 * 20 19 18 22 22 C 1.53002 * 109.46615 * 179.97438 * 21 20 19 23 23 C 1.52996 * 109.47292 * 60.00374 * 22 21 20 24 24 C 1.53006 * 109.46961 * 299.99601 * 23 22 21 25 25 C 1.52995 * 109.47196 * 300.02063 * 20 19 18 26 26 C 1.38239 * 120.00229 * 359.74917 * 19 18 17 27 27 C 1.38235 * 120.00125 * 100.00124 * 16 2 1 28 28 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 29 29 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 31 31 H 1.00901 * 110.99869 * 151.04696 * 4 2 1 32 32 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 33 33 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 34 34 H 1.08995 * 109.46615 * 299.99641 * 6 5 4 35 35 H 1.08996 * 109.46939 * 60.00272 * 6 5 4 36 36 H 1.08993 * 109.47740 * 299.99810 * 7 6 5 37 37 H 1.09005 * 109.47573 * 59.99976 * 7 6 5 38 38 H 0.97002 * 120.00555 * 179.97438 * 11 10 8 39 39 H 1.08002 * 120.00005 * 359.97438 * 17 16 2 40 40 H 1.07991 * 120.00241 * 180.22660 * 18 17 16 41 41 H 1.09003 * 109.46866 * 180.02562 * 20 19 18 42 42 H 1.08994 * 109.47157 * 299.99583 * 21 20 19 43 43 H 1.09005 * 109.47062 * 60.00256 * 21 20 19 44 44 H 1.08994 * 109.47197 * 299.99778 * 22 21 20 45 45 H 1.09001 * 109.46774 * 180.02562 * 22 21 20 46 46 H 1.08997 * 109.46971 * 179.97438 * 23 22 21 47 47 H 1.09003 * 109.47508 * 59.99641 * 23 22 21 48 48 H 1.09003 * 109.47043 * 300.00325 * 24 23 22 49 49 H 1.08992 * 109.47318 * 179.97438 * 24 23 22 50 50 H 1.09001 * 109.47434 * 300.00036 * 25 20 19 51 51 H 1.09003 * 109.47171 * 60.00238 * 25 20 19 52 52 H 1.07990 * 120.00626 * 179.97438 * 26 19 18 53 53 H 1.08001 * 120.00151 * 0.02562 * 27 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5962 -0.5328 3.5742 7 6 2.6622 0.4205 4.7691 8 6 3.1677 -0.3237 5.9781 9 1 3.4173 -1.3717 5.9017 10 6 3.3124 0.3336 7.1815 11 7 3.0089 1.6098 7.2744 12 14 3.9397 -0.5888 8.6800 13 1 5.2955 -1.1255 8.3991 14 1 4.0036 0.3365 9.8397 15 1 3.0181 -1.7105 8.9924 16 6 2.0323 -0.7104 -1.2304 17 6 2.0719 -2.0918 -1.2631 18 6 2.5282 -2.7437 -2.3936 19 6 2.9546 -2.0139 -3.4874 20 6 3.4578 -2.7244 -4.7175 21 6 2.3503 -3.6183 -5.2790 22 6 2.8611 -4.3391 -6.5282 23 6 4.0730 -5.1980 -6.1618 24 6 5.1805 -4.3040 -5.6002 25 6 4.6696 -3.5832 -4.3505 26 6 2.9199 -0.6324 -3.4528 27 6 2.4587 0.0193 -2.3243 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 2.9173 -1.1205 1.0288 32 1 2.7589 1.0462 2.1182 33 1 1.0871 0.6164 2.5525 34 1 1.9201 -1.3565 3.8030 35 1 3.5917 -0.9261 3.3683 36 1 3.3384 1.2440 4.5400 37 1 1.6669 0.8143 4.9752 38 1 3.1104 2.0722 8.1210 39 1 1.7433 -2.6619 -0.4067 40 1 2.5557 -3.8229 -2.4205 41 1 3.7475 -1.9895 -5.4686 42 1 2.0608 -4.3532 -4.5280 43 1 1.4870 -3.0063 -5.5405 44 1 3.1503 -3.6040 -7.2791 45 1 2.0719 -4.9756 -6.9285 46 1 4.4366 -5.7118 -7.0517 47 1 3.7837 -5.9332 -5.4108 48 1 5.4698 -3.5688 -6.3512 49 1 6.0438 -4.9159 -5.3388 50 1 5.4586 -2.9464 -3.9505 51 1 4.3800 -4.3182 -3.5994 52 1 3.2534 -0.0622 -4.3071 53 1 2.4322 1.0987 -2.2969 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000482462188.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:55 Heat of formation + Delta-G solvation = -40.956744 kcal Electronic energy + Delta-G solvation = -25407.914750 eV Core-core repulsion = 22048.196680 eV Total energy + Delta-G solvation = -3359.718070 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.97207 -39.27757 -37.74317 -35.83259 -34.21228 -32.80943 -31.79248 -31.59468 -30.90246 -28.97066 -27.80367 -25.10298 -24.03946 -23.76771 -23.40489 -22.23057 -21.95076 -20.99032 -20.32972 -18.50141 -17.65943 -16.93340 -16.64915 -16.52326 -16.04522 -15.65670 -15.30033 -15.17551 -15.06295 -14.90914 -14.71883 -14.43956 -14.26624 -14.00104 -13.79043 -13.67915 -13.45798 -13.24971 -13.04259 -12.89757 -12.76172 -12.72737 -12.48209 -12.42568 -12.21648 -12.18177 -11.99694 -11.80121 -11.73573 -11.49746 -11.37575 -11.27845 -11.11284 -10.99318 -10.89320 -10.55168 -9.77463 -9.41358 -9.39287 -8.20142 -6.31367 0.42324 0.54773 1.39578 1.43079 1.50991 2.40844 2.83752 3.12581 3.20058 3.62604 3.75368 3.83498 3.95522 4.05777 4.18819 4.22595 4.26723 4.29781 4.33196 4.42310 4.43094 4.53370 4.60809 4.64098 4.65743 4.67907 4.69928 4.73147 4.77925 4.81527 4.93684 4.97138 4.98702 5.12300 5.17129 5.18927 5.20270 5.22520 5.26768 5.28050 5.29302 5.34389 5.39658 5.47452 5.51030 5.56762 5.57150 5.69021 5.74550 5.80215 5.85282 6.09243 6.15895 6.27151 6.45227 6.85091 7.37630 8.91470 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.020428 B = 0.001947 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.371124 B =14381.215979 C =15239.027128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.123 3.877 3 H 0.046 0.954 4 N -0.681 5.681 5 C 0.073 3.927 6 C -0.091 4.091 7 C 0.025 3.975 8 C -0.544 4.544 9 H 0.059 0.941 10 C -0.002 4.002 11 N -0.933 5.933 12 Si 0.966 3.034 13 H -0.267 1.267 14 H -0.282 1.282 15 H -0.267 1.267 16 C -0.100 4.100 17 C -0.107 4.107 18 C -0.119 4.119 19 C -0.080 4.080 20 C -0.041 4.041 21 C -0.108 4.108 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.118 4.118 25 C -0.110 4.110 26 C -0.123 4.123 27 C -0.120 4.120 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.342 0.658 32 H 0.021 0.979 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.048 0.952 36 H -0.010 1.010 37 H -0.008 1.008 38 H 0.264 0.736 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.081 0.919 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.059 0.941 48 H 0.065 0.935 49 H 0.064 0.936 50 H 0.056 0.944 51 H 0.060 0.940 52 H 0.137 0.863 53 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.076 -10.488 -31.895 33.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.014 3.986 3 H 0.064 0.936 4 N -0.313 5.313 5 C -0.056 4.056 6 C -0.129 4.129 7 C -0.012 4.012 8 C -0.582 4.582 9 H 0.077 0.923 10 C -0.200 4.200 11 N -0.573 5.573 12 Si 0.791 3.209 13 H -0.192 1.192 14 H -0.207 1.207 15 H -0.192 1.192 16 C -0.100 4.100 17 C -0.125 4.125 18 C -0.137 4.137 19 C -0.080 4.080 20 C -0.059 4.059 21 C -0.146 4.146 22 C -0.155 4.155 23 C -0.158 4.158 24 C -0.155 4.155 25 C -0.148 4.148 26 C -0.141 4.141 27 C -0.138 4.138 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.161 0.839 32 H 0.039 0.961 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.008 0.992 37 H 0.010 0.990 38 H 0.072 0.928 39 H 0.142 0.858 40 H 0.147 0.853 41 H 0.099 0.901 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.077 0.923 48 H 0.083 0.917 49 H 0.083 0.917 50 H 0.074 0.926 51 H 0.079 0.921 52 H 0.154 0.846 53 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.557 -10.589 -31.610 33.341 hybrid contribution 0.944 0.645 1.076 1.570 sum 0.388 -9.944 -30.535 32.115 Atomic orbital electron populations 1.21732 0.93302 1.02280 1.01436 1.20450 0.96375 0.95002 0.86805 0.93622 1.60635 1.33506 1.33192 1.03948 1.21873 0.99868 0.93466 0.90376 1.21364 0.99658 0.98314 0.93605 1.18967 0.94853 0.94419 0.92995 1.21669 1.43884 0.96860 0.95817 0.92254 1.26012 0.95689 0.95816 1.02476 1.70092 1.49767 1.10668 1.26802 0.85483 0.79199 0.78344 0.77914 1.19151 1.20736 1.19170 1.19920 1.00426 0.94298 0.95403 1.21106 0.99071 0.93898 0.98437 1.21118 0.99425 1.00272 0.92905 1.20078 0.98365 0.93611 0.95928 1.20152 0.95394 0.96871 0.93518 1.21570 0.97100 0.98216 0.97699 1.21529 0.97824 0.98996 0.97125 1.21550 0.95448 0.97862 1.00913 1.21541 0.98078 0.98868 0.97039 1.21590 0.96637 0.98434 0.98090 1.21224 1.00383 0.94130 0.98370 1.21188 0.99089 1.00259 0.93275 0.91345 0.92299 0.93199 0.83927 0.96099 0.91822 0.92792 0.93288 0.99158 0.98987 0.92769 0.85768 0.85289 0.90080 0.92111 0.92234 0.91659 0.91479 0.91368 0.92262 0.91656 0.91686 0.92553 0.92138 0.84560 0.85401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 9.39 71.98 0.68 -2.43 16 2 C 0.12 3.12 2.82 44.17 0.12 3.25 16 3 H 0.05 1.19 7.66 -2.38 -0.02 1.17 16 4 N -0.68 -20.13 5.69 -495.43 -2.82 -22.95 16 5 C 0.07 2.61 5.48 86.30 0.47 3.08 16 6 C -0.09 -3.91 5.41 30.59 0.17 -3.75 16 7 C 0.03 1.38 4.97 29.85 0.15 1.52 16 8 C -0.54 -31.87 9.11 25.60 0.23 -31.64 16 9 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 10 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 11 N -0.93 -57.83 13.29 21.45 0.28 -57.54 16 12 Si 0.97 45.06 29.54 68.60 2.03 47.08 16 13 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 14 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 15 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 16 C -0.10 -2.29 4.72 -19.87 -0.09 -2.38 16 17 C -0.11 -2.38 9.00 22.27 0.20 -2.18 16 18 C -0.12 -2.28 8.71 22.27 0.19 -2.09 16 19 C -0.08 -1.38 4.78 -19.86 -0.09 -1.48 16 20 C -0.04 -0.55 2.36 -11.54 -0.03 -0.57 16 21 C -0.11 -1.32 5.02 30.59 0.15 -1.17 16 22 C -0.12 -1.15 5.92 30.59 0.18 -0.97 16 23 C -0.12 -1.17 5.92 30.59 0.18 -0.99 16 24 C -0.12 -1.24 5.93 30.61 0.18 -1.06 16 25 C -0.11 -1.44 5.02 30.61 0.15 -1.28 16 26 C -0.12 -2.20 9.67 22.27 0.22 -1.98 16 27 C -0.12 -2.43 9.67 22.27 0.22 -2.21 16 28 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 1.28 7.45 -2.38 -0.02 1.26 16 31 H 0.34 9.82 7.98 -89.69 -0.72 9.11 16 32 H 0.02 0.75 8.06 -2.39 -0.02 0.73 16 33 H 0.06 2.32 7.44 -2.39 -0.02 2.30 16 34 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 35 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 36 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 37 H -0.01 -0.48 8.14 -2.38 -0.02 -0.50 16 38 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 39 H 0.12 2.89 7.71 -2.91 -0.02 2.86 16 40 H 0.13 2.12 7.10 -2.92 -0.02 2.10 16 41 H 0.08 0.99 7.88 -2.39 -0.02 0.98 16 42 H 0.06 0.79 7.39 -2.39 -0.02 0.78 16 43 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 44 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 47 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 50 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.06 0.85 7.39 -2.39 -0.02 0.83 16 52 H 0.14 1.86 7.95 -2.92 -0.02 1.84 16 53 H 0.13 2.28 8.04 -2.91 -0.02 2.25 16 Total: -1.00 -64.11 411.28 3.36 -60.75 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.12 Total: 20.65 kcal Atomic # 6 Polarization: -51.74 SS G_CDS: 3.74 Total: -47.99 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -2.53 Total: -80.49 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -64.11 3.36 -60.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000482462188.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.798 kcal (2) G-P(sol) polarization free energy of solvation -64.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds