Wall clock time and date at job start Tue Mar 31 2020 10:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46897 * 2 1 4 4 C 1.50693 * 109.47119 * 120.00116 * 2 1 3 5 5 C 1.38233 * 120.00207 * 259.99622 * 4 2 1 6 6 C 1.38234 * 120.00037 * 179.72405 * 5 4 2 7 7 C 1.38234 * 120.00240 * 0.26327 * 6 5 4 8 8 C 1.50701 * 120.00243 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47016 * 60.00182 * 8 7 6 10 10 C 1.53004 * 109.46958 * 179.97438 * 8 7 6 11 11 C 1.53003 * 109.47161 * 300.00015 * 8 7 6 12 12 C 1.38238 * 119.99693 * 359.97438 * 7 6 5 13 13 C 1.38234 * 120.00067 * 0.02562 * 12 7 6 14 14 N 1.46903 * 109.47075 * 240.00439 * 2 1 3 15 15 C 1.46845 * 110.99775 * 184.20982 * 14 2 1 16 16 C 1.53041 * 109.52128 * 174.15799 * 15 14 2 17 17 C 1.53121 * 109.27795 * 59.18139 * 16 15 14 18 18 C 1.50699 * 109.52394 * 182.44155 * 17 16 15 19 19 H 1.07997 * 120.00201 * 119.68122 * 18 17 16 20 20 C 1.37885 * 119.99650 * 299.68145 * 18 17 16 21 21 N 1.31518 * 119.99608 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00002 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46902 * 90.00224 * 22 20 18 24 24 H 1.48501 * 109.46932 * 210.00222 * 22 20 18 25 25 H 1.48498 * 109.47121 * 330.00191 * 22 20 18 26 26 C 1.53120 * 109.15623 * 302.34346 * 17 16 15 27 27 C 1.46843 * 111.00128 * 59.99769 * 14 2 1 28 28 H 1.09002 * 109.47074 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47288 * 299.99622 * 1 2 3 30 30 H 1.09003 * 109.47330 * 59.99660 * 1 2 3 31 31 H 1.08002 * 120.00157 * 0.02562 * 5 4 2 32 32 H 1.07999 * 120.00009 * 180.28389 * 6 5 4 33 33 H 1.09000 * 109.47045 * 59.99646 * 9 8 7 34 34 H 1.08997 * 109.46996 * 179.97438 * 9 8 7 35 35 H 1.08998 * 109.47024 * 299.99782 * 9 8 7 36 36 H 1.08993 * 109.47138 * 60.00505 * 10 8 7 37 37 H 1.09005 * 109.46800 * 180.02562 * 10 8 7 38 38 H 1.08995 * 109.47224 * 299.99963 * 10 8 7 39 39 H 1.08996 * 109.46931 * 59.99555 * 11 8 7 40 40 H 1.08997 * 109.46617 * 179.97438 * 11 8 7 41 41 H 1.08998 * 109.46968 * 299.99984 * 11 8 7 42 42 H 1.08001 * 119.99624 * 180.02562 * 12 7 6 43 43 H 1.07999 * 120.00008 * 180.02562 * 13 12 7 44 44 H 1.09004 * 109.46254 * 294.17318 * 15 14 2 45 45 H 1.08994 * 109.46659 * 54.14386 * 15 14 2 46 46 H 1.08995 * 109.50422 * 299.23616 * 16 15 14 47 47 H 1.09001 * 109.53213 * 179.13760 * 16 15 14 48 48 H 1.09003 * 109.52390 * 62.24619 * 17 16 15 49 49 H 0.97000 * 119.99161 * 179.97438 * 21 20 18 50 50 H 1.08998 * 109.50716 * 297.71179 * 26 17 16 51 51 H 1.09002 * 109.49934 * 177.59608 * 26 17 16 52 52 H 1.08994 * 109.46397 * 305.85948 * 27 14 2 53 53 H 1.09002 * 109.46213 * 65.82515 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.4588 0.0194 2.3242 6 6 2.9142 -0.6324 3.4550 7 6 2.9483 -2.0139 3.4900 8 6 3.4442 -2.7244 4.7229 9 6 2.5663 -2.3460 5.9175 10 6 3.3784 -4.2369 4.5011 11 6 4.8909 -2.3119 5.0022 12 6 2.5264 -2.7436 2.3943 13 6 2.0710 -2.0918 1.2635 14 7 2.0197 -0.6924 -1.1995 15 6 3.4841 -0.7998 -1.1842 16 6 3.9470 -1.6499 -2.3695 17 6 3.4780 -0.9978 -3.6731 18 6 3.8791 -1.8616 -4.8411 19 1 3.1233 -2.2676 -5.4970 20 6 5.2110 -2.1334 -5.0722 21 7 5.5610 -2.8868 -6.0918 22 14 6.5182 -1.4304 -3.9380 23 1 6.7731 -2.3819 -2.8267 24 1 7.7728 -1.2146 -4.7025 25 1 6.0479 -0.1358 -3.3830 26 6 1.9540 -0.8536 -3.6428 27 6 1.5488 -0.0265 -2.4206 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 2.4316 1.0987 2.2972 32 1 3.2431 -0.0623 4.3113 33 1 1.5357 -2.6399 5.7185 34 1 2.9247 -2.8603 6.8092 35 1 2.6127 -1.2686 6.0757 36 1 4.0036 -4.5068 3.6501 37 1 3.7367 -4.7508 5.3931 38 1 2.3477 -4.5305 4.3025 39 1 4.9373 -1.2344 5.1603 40 1 5.2493 -2.8255 5.8942 41 1 5.5163 -2.5815 4.1512 42 1 2.5527 -3.8230 2.4218 43 1 1.7410 -2.6620 0.4077 44 1 3.9220 0.1957 -1.2582 45 1 3.8042 -1.2689 -0.2539 46 1 3.5206 -2.6498 -2.2888 47 1 5.0350 -1.7170 -2.3670 48 1 3.9352 -0.0133 -3.7729 49 1 6.4980 -3.0777 -6.2545 50 1 1.4961 -1.8409 -3.5822 51 1 1.6180 -0.3511 -4.5499 52 1 0.4633 0.0660 -2.3883 53 1 1.9958 0.9653 -2.4889 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000543807554.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:59 Heat of formation + Delta-G solvation = 9.756387 kcal Electronic energy + Delta-G solvation = -27408.818689 eV Core-core repulsion = 24051.299705 eV Total energy + Delta-G solvation = -3357.518984 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.21394 -38.70236 -36.59776 -34.45544 -32.20209 -31.09586 -30.42949 -30.22292 -28.49558 -27.54625 -27.46589 -25.66789 -23.83209 -22.46804 -21.99774 -21.75850 -20.28310 -19.18558 -18.78524 -16.74911 -16.59190 -16.07873 -15.24218 -14.87762 -14.50495 -14.44472 -14.26700 -14.21226 -13.70765 -13.58121 -13.39573 -13.17154 -12.89880 -12.86813 -12.79560 -12.39009 -12.32638 -12.12828 -12.08259 -11.90153 -11.58421 -11.53507 -11.39257 -11.27048 -11.15490 -11.04676 -10.81253 -10.55261 -10.50644 -10.49890 -10.04030 -9.82848 -9.57820 -9.01129 -8.89742 -8.78715 -8.49646 -8.38266 -7.91185 -6.02737 -4.00544 1.39565 1.51400 3.30042 3.40131 3.42214 3.79424 4.21224 4.42921 4.45087 4.57187 4.79607 4.80200 5.02398 5.10335 5.13186 5.28477 5.31938 5.36101 5.37945 5.39114 5.49711 5.53043 5.54292 5.62197 5.65254 5.69816 5.73775 5.75892 5.81867 5.86112 5.88294 5.93141 5.96941 6.06421 6.09119 6.10353 6.16461 6.18762 6.22983 6.30088 6.43907 6.49587 6.53451 6.68902 6.71324 6.80898 6.90282 6.99915 7.09776 7.27308 7.49087 7.58813 7.69455 7.84103 8.58624 9.02223 9.60802 11.10863 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.014575 B = 0.003692 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.573188 B = 7582.393009 C = 8767.100406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.117 3.883 3 H 0.041 0.959 4 C -0.076 4.076 5 C -0.117 4.117 6 C -0.120 4.120 7 C -0.076 4.076 8 C -0.029 4.029 9 C -0.137 4.137 10 C -0.144 4.144 11 C -0.138 4.138 12 C -0.125 4.125 13 C -0.086 4.086 14 N -0.525 5.525 15 C 0.055 3.945 16 C -0.114 4.114 17 C 0.013 3.987 18 C -0.508 4.508 19 H 0.073 0.927 20 C 0.068 3.932 21 N -0.904 5.904 22 Si 0.886 3.114 23 H -0.279 1.279 24 H -0.299 1.299 25 H -0.268 1.268 26 C -0.095 4.095 27 C 0.054 3.946 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.124 0.876 43 H 0.133 0.867 44 H 0.021 0.979 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.046 0.954 48 H 0.020 0.980 49 H 0.262 0.738 50 H 0.063 0.937 51 H 0.057 0.943 52 H 0.068 0.932 53 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.512 3.684 23.547 24.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.009 3.991 3 H 0.059 0.941 4 C -0.076 4.076 5 C -0.136 4.136 6 C -0.138 4.138 7 C -0.076 4.076 8 C -0.029 4.029 9 C -0.194 4.194 10 C -0.202 4.202 11 C -0.196 4.196 12 C -0.143 4.143 13 C -0.104 4.104 14 N -0.250 5.250 15 C -0.073 4.073 16 C -0.151 4.151 17 C -0.006 4.006 18 C -0.546 4.546 19 H 0.091 0.909 20 C -0.133 4.133 21 N -0.542 5.542 22 Si 0.717 3.283 23 H -0.206 1.206 24 H -0.226 1.226 25 H -0.193 1.193 26 C -0.133 4.133 27 C -0.074 4.074 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.141 0.859 43 H 0.151 0.849 44 H 0.039 0.961 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.064 0.936 48 H 0.038 0.962 49 H 0.072 0.928 50 H 0.082 0.918 51 H 0.075 0.925 52 H 0.086 0.914 53 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -7.558 3.137 23.436 24.824 hybrid contribution 1.309 1.185 0.528 1.843 sum -6.249 4.322 23.964 25.140 Atomic orbital electron populations 1.21852 0.93675 1.02764 1.01332 1.20519 0.95469 0.94642 0.88462 0.94102 1.19775 0.98985 0.94144 0.94705 1.20949 0.99830 0.99372 0.93427 1.20804 1.01181 0.93864 0.97935 1.19749 0.99358 0.93471 0.95069 1.19480 0.95481 0.95083 0.92847 1.21877 0.99492 1.01371 0.96649 1.21964 1.02095 0.94285 1.01810 1.21889 0.94863 1.01295 1.01524 1.21212 0.99964 1.00048 0.93062 1.21136 0.97613 0.94003 0.97662 1.61983 1.11005 1.51191 1.00803 1.22212 0.86456 0.98663 0.99926 1.21989 0.98713 0.99782 0.94656 1.19184 0.92135 0.96132 0.93129 1.21071 0.93090 1.30136 1.10322 0.90889 1.25022 0.98543 0.94648 0.95055 1.69908 1.17163 1.38088 1.29081 0.86862 0.80927 0.80189 0.80329 1.20590 1.22641 1.19297 1.21481 0.98203 0.99339 0.94245 1.22254 0.99125 0.95572 0.90422 0.91599 0.92640 0.92086 0.86685 0.86682 0.92536 0.92553 0.92568 0.92084 0.92571 0.92233 0.92554 0.92527 0.92373 0.85855 0.84903 0.96060 0.91562 0.91372 0.93576 0.96194 0.92793 0.91815 0.92466 0.91364 0.95757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.95 37.16 0.33 -1.28 16 2 C 0.12 1.60 2.28 -68.87 -0.16 1.44 16 3 H 0.04 0.56 8.00 -51.93 -0.42 0.15 16 4 C -0.08 -1.00 3.69 -104.63 -0.39 -1.39 16 5 C -0.12 -1.41 9.67 -39.58 -0.38 -1.79 16 6 C -0.12 -1.33 8.71 -39.58 -0.34 -1.68 16 7 C -0.08 -0.85 4.76 -104.62 -0.50 -1.35 16 8 C -0.03 -0.26 0.85 -155.66 -0.13 -0.39 16 9 C -0.14 -1.07 8.29 37.16 0.31 -0.76 16 10 C -0.14 -1.22 7.13 37.16 0.27 -0.95 16 11 C -0.14 -1.19 8.29 37.16 0.31 -0.89 16 12 C -0.12 -1.52 8.98 -39.58 -0.36 -1.87 16 13 C -0.09 -1.16 8.10 -39.58 -0.32 -1.48 16 14 N -0.52 -8.56 3.86 -228.09 -0.88 -9.44 16 15 C 0.05 1.02 5.07 -3.83 -0.02 1.00 16 16 C -0.11 -2.50 4.84 -26.65 -0.13 -2.63 16 17 C 0.01 0.31 1.75 -91.65 -0.16 0.15 16 18 C -0.51 -14.38 9.14 -34.44 -0.31 -14.70 16 19 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 20 C 0.07 1.99 5.45 -17.82 -0.10 1.90 16 21 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 22 Si 0.89 22.47 24.37 -169.99 -4.14 18.33 16 23 H -0.28 -6.90 6.89 56.52 0.39 -6.51 16 24 H -0.30 -7.59 7.11 56.52 0.40 -7.19 16 25 H -0.27 -6.56 6.53 56.52 0.37 -6.19 16 26 C -0.09 -1.89 5.32 -26.65 -0.14 -2.03 16 27 C 0.05 0.89 5.22 -3.84 -0.02 0.87 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.68 6.28 -51.93 -0.33 0.35 16 31 H 0.12 1.22 8.04 -52.49 -0.42 0.80 16 32 H 0.12 1.08 7.10 -52.49 -0.37 0.70 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.42 7.39 -51.93 -0.38 0.04 16 36 H 0.06 0.55 7.51 -51.93 -0.39 0.16 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.49 7.51 -51.93 -0.39 0.10 16 39 H 0.06 0.47 7.39 -51.93 -0.38 0.08 16 40 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.12 1.34 5.90 -52.49 -0.31 1.03 16 43 H 0.13 1.92 7.71 -52.49 -0.40 1.51 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 1.18 5.95 -51.93 -0.31 0.87 16 46 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 47 H 0.05 1.08 3.38 -51.93 -0.18 0.91 16 48 H 0.02 0.49 7.19 -51.93 -0.37 0.12 16 49 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 50 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 51 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 52 H 0.07 0.98 6.01 -51.93 -0.31 0.67 16 53 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 388.56 15.07 5.86 5.86 Total: -1.00 -30.07 388.56 -10.28 -40.35 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -9.64 Total: 0.00 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: -2.25 Total: -27.84 kcal Atomic # 7 Polarization: -36.59 SS G_CDS: -0.11 Total: -36.69 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.14 Total: 18.33 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.07 -10.28 -40.35 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543807554.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.109 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds