Wall clock time and date at job start Tue Mar 31 2020 10:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46897 * 2 1 4 4 C 1.50693 * 109.47119 * 120.00116 * 2 1 3 5 5 C 1.38233 * 120.00207 * 259.99622 * 4 2 1 6 6 C 1.38234 * 120.00037 * 179.72405 * 5 4 2 7 7 C 1.38234 * 120.00240 * 0.26327 * 6 5 4 8 8 C 1.50701 * 120.00243 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47016 * 60.00182 * 8 7 6 10 10 C 1.53004 * 109.46958 * 179.97438 * 8 7 6 11 11 C 1.53003 * 109.47161 * 300.00015 * 8 7 6 12 12 C 1.38238 * 119.99693 * 359.97438 * 7 6 5 13 13 C 1.38234 * 120.00067 * 0.02562 * 12 7 6 14 14 N 1.46903 * 109.47075 * 240.00439 * 2 1 3 15 15 C 1.46845 * 110.99775 * 184.20982 * 14 2 1 16 16 C 1.53041 * 109.52128 * 174.15799 * 15 14 2 17 17 C 1.53121 * 109.27795 * 59.18139 * 16 15 14 18 18 C 1.50699 * 109.52394 * 182.44155 * 17 16 15 19 19 H 1.07997 * 120.00201 * 119.68122 * 18 17 16 20 20 C 1.37885 * 119.99650 * 299.68145 * 18 17 16 21 21 N 1.31518 * 119.99608 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 120.00002 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46902 * 90.00224 * 22 20 18 24 24 H 1.48501 * 109.46932 * 210.00222 * 22 20 18 25 25 H 1.48498 * 109.47121 * 330.00191 * 22 20 18 26 26 C 1.53120 * 109.15623 * 302.34346 * 17 16 15 27 27 C 1.46843 * 111.00128 * 59.99769 * 14 2 1 28 28 H 1.09002 * 109.47074 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47288 * 299.99622 * 1 2 3 30 30 H 1.09003 * 109.47330 * 59.99660 * 1 2 3 31 31 H 1.08002 * 120.00157 * 0.02562 * 5 4 2 32 32 H 1.07999 * 120.00009 * 180.28389 * 6 5 4 33 33 H 1.09000 * 109.47045 * 59.99646 * 9 8 7 34 34 H 1.08997 * 109.46996 * 179.97438 * 9 8 7 35 35 H 1.08998 * 109.47024 * 299.99782 * 9 8 7 36 36 H 1.08993 * 109.47138 * 60.00505 * 10 8 7 37 37 H 1.09005 * 109.46800 * 180.02562 * 10 8 7 38 38 H 1.08995 * 109.47224 * 299.99963 * 10 8 7 39 39 H 1.08996 * 109.46931 * 59.99555 * 11 8 7 40 40 H 1.08997 * 109.46617 * 179.97438 * 11 8 7 41 41 H 1.08998 * 109.46968 * 299.99984 * 11 8 7 42 42 H 1.08001 * 119.99624 * 180.02562 * 12 7 6 43 43 H 1.07999 * 120.00008 * 180.02562 * 13 12 7 44 44 H 1.09004 * 109.46254 * 294.17318 * 15 14 2 45 45 H 1.08994 * 109.46659 * 54.14386 * 15 14 2 46 46 H 1.08995 * 109.50422 * 299.23616 * 16 15 14 47 47 H 1.09001 * 109.53213 * 179.13760 * 16 15 14 48 48 H 1.09003 * 109.52390 * 62.24619 * 17 16 15 49 49 H 0.97000 * 119.99161 * 179.97438 * 21 20 18 50 50 H 1.08998 * 109.50716 * 297.71179 * 26 17 16 51 51 H 1.09002 * 109.49934 * 177.59608 * 26 17 16 52 52 H 1.08994 * 109.46397 * 305.85948 * 27 14 2 53 53 H 1.09002 * 109.46213 * 65.82515 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 2.4588 0.0194 2.3242 6 6 2.9142 -0.6324 3.4550 7 6 2.9483 -2.0139 3.4900 8 6 3.4442 -2.7244 4.7229 9 6 2.5663 -2.3460 5.9175 10 6 3.3784 -4.2369 4.5011 11 6 4.8909 -2.3119 5.0022 12 6 2.5264 -2.7436 2.3943 13 6 2.0710 -2.0918 1.2635 14 7 2.0197 -0.6924 -1.1995 15 6 3.4841 -0.7998 -1.1842 16 6 3.9470 -1.6499 -2.3695 17 6 3.4780 -0.9978 -3.6731 18 6 3.8791 -1.8616 -4.8411 19 1 3.1233 -2.2676 -5.4970 20 6 5.2110 -2.1334 -5.0722 21 7 5.5610 -2.8868 -6.0918 22 14 6.5182 -1.4304 -3.9380 23 1 6.7731 -2.3819 -2.8267 24 1 7.7728 -1.2146 -4.7025 25 1 6.0479 -0.1358 -3.3830 26 6 1.9540 -0.8536 -3.6428 27 6 1.5488 -0.0265 -2.4206 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 2.4316 1.0987 2.2972 32 1 3.2431 -0.0623 4.3113 33 1 1.5357 -2.6399 5.7185 34 1 2.9247 -2.8603 6.8092 35 1 2.6127 -1.2686 6.0757 36 1 4.0036 -4.5068 3.6501 37 1 3.7367 -4.7508 5.3931 38 1 2.3477 -4.5305 4.3025 39 1 4.9373 -1.2344 5.1603 40 1 5.2493 -2.8255 5.8942 41 1 5.5163 -2.5815 4.1512 42 1 2.5527 -3.8230 2.4218 43 1 1.7410 -2.6620 0.4077 44 1 3.9220 0.1957 -1.2582 45 1 3.8042 -1.2689 -0.2539 46 1 3.5206 -2.6498 -2.2888 47 1 5.0350 -1.7170 -2.3670 48 1 3.9352 -0.0133 -3.7729 49 1 6.4980 -3.0777 -6.2545 50 1 1.4961 -1.8409 -3.5822 51 1 1.6180 -0.3511 -4.5499 52 1 0.4633 0.0660 -2.3883 53 1 1.9958 0.9653 -2.4889 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000543807554.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:38:58 Heat of formation + Delta-G solvation = -5.156206 kcal Electronic energy + Delta-G solvation = -27409.465347 eV Core-core repulsion = 24051.299705 eV Total energy + Delta-G solvation = -3358.165642 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 315.226 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.18929 -39.92709 -37.64386 -35.88324 -34.11513 -32.08117 -31.84349 -31.63932 -29.52507 -28.22242 -28.07937 -27.46182 -25.02613 -23.66124 -23.38402 -23.08680 -21.41861 -20.45078 -19.97372 -18.83812 -17.66388 -17.31818 -16.48487 -16.07712 -15.72451 -15.59526 -15.28332 -15.22013 -15.09261 -14.83361 -14.57846 -14.44772 -14.29088 -14.09034 -13.88435 -13.63632 -13.59988 -13.17334 -13.02756 -12.82317 -12.72535 -12.60270 -12.55156 -12.43813 -12.23970 -12.15073 -12.09379 -11.96278 -11.78649 -11.64964 -11.42864 -11.35787 -11.27890 -10.95774 -10.77251 -10.61443 -9.71830 -9.31872 -9.20639 -8.30916 -6.33036 0.48727 0.59756 1.26981 1.31155 1.41767 2.30103 2.82453 3.01742 3.04582 3.65793 3.81855 3.86922 4.07772 4.12613 4.14650 4.17123 4.22999 4.27557 4.34836 4.40308 4.44482 4.51254 4.61995 4.66064 4.66965 4.69639 4.79047 4.79830 4.84491 4.86459 4.89408 4.90929 4.96700 5.02748 5.04173 5.06717 5.08801 5.17397 5.19726 5.23011 5.28268 5.30827 5.38284 5.39305 5.46042 5.53113 5.64545 5.66409 5.75531 5.80871 5.82219 6.17374 6.21192 6.32939 6.33293 6.74063 7.31953 8.86318 Molecular weight = 315.23amu Principal moments of inertia in cm(-1) A = 0.014575 B = 0.003692 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1920.573188 B = 7582.393009 C = 8767.100406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.119 3.881 3 H 0.047 0.953 4 C -0.088 4.088 5 C -0.121 4.121 6 C -0.120 4.120 7 C -0.077 4.077 8 C -0.029 4.029 9 C -0.134 4.134 10 C -0.145 4.145 11 C -0.137 4.137 12 C -0.135 4.135 13 C -0.101 4.101 14 N -0.530 5.530 15 C 0.068 3.932 16 C -0.110 4.110 17 C 0.013 3.987 18 C -0.514 4.514 19 H 0.033 0.967 20 C 0.011 3.989 21 N -0.951 5.951 22 Si 0.948 3.052 23 H -0.269 1.269 24 H -0.298 1.298 25 H -0.252 1.252 26 C -0.091 4.091 27 C 0.062 3.938 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.050 0.950 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.043 0.957 42 H 0.128 0.872 43 H 0.116 0.884 44 H 0.021 0.979 45 H 0.074 0.926 46 H 0.054 0.946 47 H 0.033 0.967 48 H 0.015 0.985 49 H 0.265 0.735 50 H 0.051 0.949 51 H 0.057 0.943 52 H 0.097 0.903 53 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.753 5.468 27.041 28.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.012 3.988 3 H 0.065 0.935 4 C -0.088 4.088 5 C -0.139 4.139 6 C -0.138 4.138 7 C -0.077 4.077 8 C -0.029 4.029 9 C -0.191 4.191 10 C -0.202 4.202 11 C -0.195 4.195 12 C -0.153 4.153 13 C -0.120 4.120 14 N -0.256 5.256 15 C -0.060 4.060 16 C -0.147 4.147 17 C -0.006 4.006 18 C -0.552 4.552 19 H 0.052 0.948 20 C -0.185 4.185 21 N -0.592 5.592 22 Si 0.776 3.224 23 H -0.195 1.195 24 H -0.225 1.225 25 H -0.176 1.176 26 C -0.129 4.129 27 C -0.065 4.065 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.149 0.851 32 H 0.154 0.846 33 H 0.070 0.930 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.146 0.854 43 H 0.134 0.866 44 H 0.039 0.961 45 H 0.093 0.907 46 H 0.073 0.927 47 H 0.051 0.949 48 H 0.033 0.967 49 H 0.074 0.926 50 H 0.070 0.930 51 H 0.075 0.925 52 H 0.115 0.885 53 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -7.825 4.930 26.947 28.490 hybrid contribution 1.311 0.557 -0.590 1.542 sum -6.514 5.487 26.357 27.699 Atomic orbital electron populations 1.21822 0.92094 1.02642 1.02524 1.20596 0.96659 0.94474 0.87114 0.93502 1.19787 0.99964 0.93972 0.95125 1.21163 0.99323 1.00243 0.93174 1.21075 1.00436 0.93970 0.98343 1.20031 0.98428 0.93812 0.95416 1.19538 0.95941 0.95048 0.92414 1.21854 0.98922 1.01846 0.96466 1.21964 1.01911 0.94253 1.02042 1.21885 0.94224 1.01773 1.01579 1.21348 1.00170 1.00546 0.93201 1.21074 0.98814 0.94369 0.97723 1.61924 1.09516 1.52247 1.01891 1.21974 0.87996 0.97717 0.98276 1.21830 0.97783 0.99733 0.95397 1.19147 0.94760 0.94638 0.92075 1.21414 0.92387 1.30149 1.11233 0.94822 1.25858 1.00995 0.95090 0.96578 1.70054 1.17804 1.40070 1.31259 0.85845 0.77839 0.80276 0.78457 1.19495 1.22535 1.17576 1.21384 0.95467 0.99585 0.96456 1.22157 1.00861 0.94669 0.88829 0.92374 0.90889 0.91422 0.85059 0.84646 0.93008 0.91225 0.92091 0.93089 0.91239 0.92336 0.92096 0.91107 0.93752 0.85380 0.86613 0.96080 0.90749 0.92704 0.94864 0.96715 0.92646 0.93014 0.92466 0.88512 0.95278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.73 8.95 71.98 0.64 -2.08 16 2 C 0.12 2.95 2.28 44.17 0.10 3.05 16 3 H 0.05 1.13 8.00 -2.39 -0.02 1.11 16 4 C -0.09 -2.16 3.69 -19.87 -0.07 -2.23 16 5 C -0.12 -2.56 9.67 22.27 0.22 -2.34 16 6 C -0.12 -2.34 8.71 22.27 0.19 -2.14 16 7 C -0.08 -1.55 4.76 -19.86 -0.09 -1.65 16 8 C -0.03 -0.46 0.85 -52.92 -0.05 -0.51 16 9 C -0.13 -1.71 8.29 71.98 0.60 -1.12 16 10 C -0.14 -2.20 7.13 71.98 0.51 -1.69 16 11 C -0.14 -2.03 8.29 71.98 0.60 -1.43 16 12 C -0.13 -3.15 8.98 22.27 0.20 -2.95 16 13 C -0.10 -2.66 8.10 22.27 0.18 -2.48 16 14 N -0.53 -16.39 3.86 -875.53 -3.38 -19.77 16 15 C 0.07 2.42 5.07 86.33 0.44 2.86 16 16 C -0.11 -4.79 4.84 30.65 0.15 -4.65 16 17 C 0.01 0.60 1.75 -11.46 -0.02 0.58 16 18 C -0.51 -30.10 9.14 25.60 0.23 -29.86 16 19 H 0.03 2.17 7.99 -2.91 -0.02 2.15 16 20 C 0.01 0.68 5.45 84.66 0.46 1.14 16 21 N -0.95 -60.98 13.96 21.45 0.30 -60.68 16 22 Si 0.95 46.79 24.37 68.60 1.67 48.46 16 23 H -0.27 -12.73 6.89 99.48 0.69 -12.04 16 24 H -0.30 -14.53 7.11 99.48 0.71 -13.83 16 25 H -0.25 -11.64 6.53 99.48 0.65 -10.99 16 26 C -0.09 -3.62 5.32 30.65 0.16 -3.45 16 27 C 0.06 1.93 5.22 86.33 0.45 2.38 16 28 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 29 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.28 6.28 -2.39 -0.01 1.27 16 31 H 0.13 2.31 8.04 -2.91 -0.02 2.28 16 32 H 0.14 2.04 7.10 -2.91 -0.02 2.02 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.06 0.72 7.39 -2.39 -0.02 0.71 16 36 H 0.05 0.87 7.51 -2.39 -0.02 0.85 16 37 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.06 0.89 7.51 -2.39 -0.02 0.87 16 39 H 0.06 0.84 7.39 -2.39 -0.02 0.82 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.13 2.75 5.90 -2.91 -0.02 2.73 16 43 H 0.12 3.37 7.71 -2.91 -0.02 3.34 16 44 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 45 H 0.07 2.54 5.95 -2.39 -0.01 2.52 16 46 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 47 H 0.03 1.53 3.38 -2.39 -0.01 1.52 16 48 H 0.01 0.72 7.19 -2.39 -0.02 0.70 16 49 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 50 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 51 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 52 H 0.10 2.50 6.01 -2.39 -0.01 2.48 16 53 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -66.44 388.56 4.26 -62.18 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.77 Total: 18.38 kcal Atomic # 6 Polarization: -53.47 SS G_CDS: 4.90 Total: -48.56 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -3.08 Total: -80.46 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 1.67 Total: 48.46 kcal Total: -66.44 4.26 -62.18 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000543807554.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.024 kcal (2) G-P(sol) polarization free energy of solvation -66.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds