Wall clock time and date at job start Tue Mar 31 2020 10:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31435 * 1 3 3 Si 1.86802 * 120.00421 * 2 1 4 4 H 1.48496 * 109.46996 * 239.99961 * 3 2 1 5 5 H 1.48501 * 109.47064 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47037 * 120.00345 * 3 2 1 7 7 C 1.38786 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00091 * 179.97438 * 7 2 1 9 9 O 1.34863 * 119.99603 * 359.97438 * 7 2 1 10 10 C 1.34864 * 116.99680 * 180.02562 * 9 7 2 11 11 O 1.21633 * 120.00122 * 359.72833 * 10 9 7 12 12 C 1.46638 * 119.99968 * 180.02562 * 10 9 7 13 13 C 1.33181 * 125.22784 * 179.71937 * 12 10 9 14 14 N 1.36194 * 116.08163 * 179.84876 * 13 12 10 15 15 C 1.39131 * 139.28471 * 180.09965 * 14 13 12 16 16 Br 1.89098 * 126.44818 * 0.32304 * 15 14 13 17 17 C 1.34277 * 107.10237 * 180.32195 * 15 14 13 18 18 N 1.34026 * 108.45506 * 359.97438 * 17 15 14 19 19 C 1.32232 * 109.19440 * 359.97438 * 18 17 15 20 20 S 1.75796 * 125.23104 * 0.02579 * 12 10 9 21 21 H 0.97004 * 119.99817 * 359.97438 * 1 2 3 22 22 H 1.08000 * 121.96566 * 0.02562 * 13 12 10 23 23 H 1.07998 * 125.76893 * 179.97438 * 17 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 3.1022 1.6962 -1.2125 5 1 1.2835 2.7465 0.0006 6 1 3.1023 1.6962 1.2125 7 6 2.0082 -1.2019 -0.0005 8 1 3.0882 -1.2020 -0.0010 9 8 1.3338 -2.3698 -0.0005 10 6 2.0683 -3.5009 -0.0005 11 8 3.2829 -3.4374 -0.0055 12 6 1.4025 -4.8074 -0.0011 13 6 2.0230 -5.9859 -0.0065 14 7 1.2196 -7.0856 -0.0028 15 6 1.3304 -8.4725 -0.0036 16 35 2.9361 -9.4713 -0.0031 17 6 0.0825 -8.9683 -0.0048 18 7 -0.7812 -7.9435 -0.0041 19 6 -0.1065 -6.8063 -0.0020 20 16 -0.3374 -5.0590 -0.0025 21 1 -0.4850 0.8401 0.0004 22 1 3.1001 -6.0649 -0.0106 23 1 -0.1806 -10.0158 -0.0060 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815368228.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:01 Heat of formation + Delta-G solvation = 10.571051 kcal Electronic energy + Delta-G solvation = -15396.349609 eV Core-core repulsion = 12384.333809 eV Total energy + Delta-G solvation = -3012.015800 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 315.930 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.01635 -41.18581 -38.18143 -37.10319 -34.42500 -33.38480 -32.00194 -29.83845 -27.95739 -25.94322 -24.41636 -22.51156 -21.17860 -20.18644 -19.68198 -18.52140 -17.68278 -17.18023 -17.04398 -16.68462 -16.30176 -15.62476 -15.27929 -14.81266 -14.26080 -13.69101 -13.62287 -13.07472 -12.63770 -12.62004 -12.46786 -12.18370 -12.14020 -12.07178 -11.50328 -11.45778 -11.35006 -10.77284 -10.19605 -8.97046 -8.63452 -6.40953 -0.92073 -0.47650 -0.11313 0.35763 0.50656 1.03370 1.37577 1.38747 1.46682 1.52859 1.77635 2.04970 2.52662 2.92883 3.13411 3.40912 3.80799 4.03799 4.41203 4.57947 5.06596 5.11974 5.21140 5.68328 6.21476 6.37999 6.79415 7.49757 8.55597 Molecular weight = 315.93amu Principal moments of inertia in cm(-1) A = 0.032432 B = 0.003673 C = 0.003303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.143423 B = 7620.773086 C = 8474.073548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.003 3.997 3 Si 1.021 2.979 4 H -0.259 1.259 5 H -0.260 1.260 6 H -0.259 1.259 7 C -0.418 4.418 8 H 0.094 0.906 9 O -0.220 6.220 10 C 0.470 3.530 11 O -0.557 6.557 12 C -0.215 4.215 13 C 0.124 3.876 14 N -0.391 5.391 15 C -0.058 4.058 16 Br 0.054 6.946 17 C 0.083 3.917 18 N -0.469 5.469 19 C 0.135 3.865 20 S 0.281 5.719 21 H 0.284 0.716 22 H 0.210 0.790 23 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.512 -17.888 -0.009 18.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.200 4.200 3 Si 0.839 3.161 4 H -0.184 1.184 5 H -0.184 1.184 6 H -0.184 1.184 7 C -0.493 4.493 8 H 0.111 0.889 9 O -0.127 6.127 10 C 0.317 3.683 11 O -0.456 6.456 12 C -0.336 4.336 13 C -0.011 4.011 14 N -0.070 5.070 15 C -0.248 4.248 16 Br 0.136 6.864 17 C -0.069 4.069 18 N -0.193 5.193 19 C -0.231 4.231 20 S 0.534 5.466 21 H 0.094 0.906 22 H 0.227 0.773 23 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 1.248 -17.265 -0.012 17.310 hybrid contribution 2.033 0.175 0.003 2.041 sum 3.282 -17.090 -0.009 17.402 Atomic orbital electron populations 1.70052 1.07739 1.30111 1.44499 1.26619 0.96900 1.02324 0.94135 0.84634 0.77636 0.73833 0.80022 1.18355 1.18408 1.18360 1.21592 0.92724 0.80110 1.54852 0.88855 1.83915 1.39645 1.13796 1.75357 1.19313 0.85259 0.84189 0.79541 1.90686 1.14902 1.87628 1.52410 1.22315 0.99263 0.94487 1.17549 1.20496 0.99306 0.82019 0.99254 1.43584 1.07237 1.05716 1.50501 1.23479 0.97639 0.79901 1.23830 1.96800 1.25685 1.65771 1.98135 1.23153 0.84914 1.00461 0.98421 1.70802 1.31446 0.94755 1.22317 1.27138 0.83041 1.02962 1.09923 1.85565 0.98149 0.84546 1.78310 0.90639 0.77323 0.74766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.62 13.67 21.63 0.30 -49.32 14 2 C 0.00 0.15 5.49 84.88 0.47 0.62 14 3 Si 1.02 40.62 29.55 68.60 2.03 42.65 14 4 H -0.26 -9.92 7.11 99.48 0.71 -9.21 14 5 H -0.26 -9.58 7.11 99.48 0.71 -8.88 14 6 H -0.26 -9.92 7.11 99.48 0.71 -9.21 14 7 C -0.42 -23.87 9.65 67.95 0.66 -23.21 14 8 H 0.09 5.32 6.86 -2.91 -0.02 5.30 14 9 O -0.22 -12.31 9.59 9.89 0.09 -12.21 14 10 C 0.47 22.91 7.87 70.01 0.55 23.46 14 11 O -0.56 -28.78 16.00 19.40 0.31 -28.47 14 12 C -0.22 -8.31 6.34 23.32 0.15 -8.16 14 13 C 0.12 4.00 10.94 82.88 0.91 4.91 14 14 N -0.39 -11.69 3.14 -349.24 -1.10 -12.79 14 15 C -0.06 -1.41 7.72 82.63 0.64 -0.77 14 16 Br 0.05 1.00 34.10 -20.37 -0.69 0.31 14 17 C 0.08 1.90 11.79 83.45 0.98 2.88 14 18 N -0.47 -13.95 11.32 -196.55 -2.23 -16.18 14 19 C 0.13 4.32 8.92 179.60 1.60 5.92 14 20 S 0.28 9.80 23.18 -56.49 -1.31 8.49 14 21 H 0.28 14.36 8.31 -92.71 -0.77 13.59 14 22 H 0.21 5.99 7.97 -2.91 -0.02 5.97 14 23 H 0.24 3.15 8.06 -2.91 -0.02 3.13 14 Total: -1.00 -65.81 261.78 4.64 -61.18 By element: Atomic # 1 Polarization: -0.60 SS G_CDS: 1.28 Total: 0.69 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: 5.95 Total: 5.66 kcal Atomic # 7 Polarization: -75.26 SS G_CDS: -3.03 Total: -78.29 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: 0.41 Total: -40.68 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 2.03 Total: 42.65 kcal Atomic # 16 Polarization: 9.80 SS G_CDS: -1.31 Total: 8.49 kcal Atomic # 35 Polarization: 1.00 SS G_CDS: -0.69 Total: 0.31 kcal Total: -65.81 4.64 -61.18 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815368228.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.748 kcal (2) G-P(sol) polarization free energy of solvation -65.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds